Functional Imaging

Tutorial pages and notebooks related to fMRI and functional imaging workflows.

• Connectome Workbench
• Using fmriprep with neurodesk on an HPC
• Assumptions
• Steps
• Using mriqc with neurodesk on HPC
• Assumptions
• Steps
• PhysIO
• A batch scripting example for PhysIO toolbox
• Getting started
• 1. Generate an example script for batching
• 2. Generalise the script for use with any participant
• 3. Ready to run on Neurodesk!
• Statistical Parametric Mapping (SPM)