Workflows

Example notebooks demonstrating common preprocessing and workflow tools.

• Neurodesk Tools Demo
• MRIQC
• Magic Commands
• PyBIDS
• RISE Slideshow
• BIDS conversion
• Ipyniivue and Ipywidgets
• Nextflow in Neurodesk
• Create a simulated second subject by copying sub-01
• Nipype on Neurodesk
• Basic Nipype
• Demonstrating the module system in Python and Nipype
• Papermill Slurm Job Submission
• Pydra