Workflows

Example notebooks demonstrating common preprocessing and workflow tools.

• Neurodesk Tools Demo
• MRIQC
• Magic Commands
• PyBIDS
• RISE Slideshow
• BIDS conversion
• Container Resource Paths on Neurodesk
• Ipyniivue and Ipywidgets
• Nextflow in Neurodesk
• Nipype on Neurodesk
• Basic Nipype
• Papermill Slurm Job Submission
• Pydra