MRIQC

Author: Monika Doerig

Date: 6 May 2025

Citation and Resources:

Tools included in this workflow

MRIQC:

• Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ; MRIQC: Advancing the Automatic Prediction of Image Quality in MRI from Unseen Sites; PLOS ONE 12(9):e0184661; doi:10.1371/journal.pone.0184661

• The documentation of this project is found here.

Dataset

Data from OpenNeuro: Flanker Dataset

• Kelly AMC and Uddin LQ and Biswal BB and Castellanos FX and Milham MP (2018). Flanker task (event-related). OpenNeuro Dataset ds000102. [Dataset] doi: null

• Kelly AM, Uddin LQ, Biswal BB, Castellanos FX, Milham MP. Competition between functional brain networks mediates behavioral variability. Neuroimage. 2008 Jan 1;39(1):527-37. doi: 10.1016/j.neuroimage.2007.08.008. Epub 2007 Aug 23. PMID: 17919929.

• Mennes, M., Kelly, C., Zuo, X.N., Di Martino, A., Biswal, B.B., Castellanos, F.X., Milham, M.P. (2010). Inter-individual differences in resting-state functional connectivity predict task-induced BOLD activity. Neuroimage, 50(4):1690-701. doi: 10.1016/j.neuroimage.2010.01.002. Epub 2010 Jan 15. Erratum in: Neuroimage. 2011 Mar 1;55(1):434

• Mennes, M., Zuo, X.N., Kelly, C., Di Martino, A., Zang, Y.F., Biswal, B., Castellanos, F.X., Milham, M.P. (2011). Linking inter-individual differences in neural activation and behavior to intrinsic brain dynamics. Neuroimage, 54(4):2950-9. doi: 10.1016/j.neuroimage.2010.10.046

Load MRIQC

import module
await module.purge()
await module.load('mriqc/22.0.6')
await module.list()

['mriqc/22.0.6']

!mriqc -h

You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.
usage: mriqc [-h] [--version] [-v] [--species {human,rat}]
             [--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
             [--session-id [SESSION_ID ...]] [--run-id [RUN_ID ...]]
             [--task-id [TASK_ID ...]] [-m [MODALITIES ...]] [--dsname DSNAME]
             [--bids-database-dir PATH] [--nprocs NPROCS]
             [--omp-nthreads OMP_NTHREADS] [--mem MEMORY_GB] [--testing] [-f]
             [--pdb] [-w WORK_DIR] [--verbose-reports] [--write-graph]
             [--dry-run] [--resource-monitor] [--use-plugin USE_PLUGIN]
             [--no-sub] [--email EMAIL] [--webapi-url WEBAPI_URL]
             [--webapi-port WEBAPI_PORT] [--upload-strict] [--ants-float]
             [--ants-settings ANTS_SETTINGS] [--ica] [--fft-spikes-detector]
             [--fd_thres FD_THRES] [--deoblique] [--despike]
             [--start-idx START_IDX] [--stop-idx STOP_IDX]
             bids_dir output_dir {participant,group} [{participant,group} ...]

MRIQC 22.0.6 Automated Quality Control and visual reports for Quality
Assesment of structural (T1w, T2w) and functional MRI of the brain. IMPORTANT:
Anonymized quality metrics (IQMs) will be submitted to MRIQC's metrics
repository. Submission of IQMs can be disabled using the ``--no-sub``
argument. Please visit https://mriqc.readthedocs.io/en/latest/dsa.html to
revise MRIQC's Data Sharing Agreement.

positional arguments:
  bids_dir              The root folder of a BIDS valid dataset (sub-XXXXX
                        folders should be found at the top level in this
                        folder).
  output_dir            The directory where the output files should be stored.
                        If you are running group level analysis this folder
                        should be prepopulated with the results of the
                        participant level analysis.
  {participant,group}   Level of the analysis that will be performed. Multiple
                        participant level analyses can be run independently
                        (in parallel) using the same output_dir.

optional arguments:
  -h, --help            show this help message and exit
  --version             show program's version number and exit
  -v, --verbose         Increases log verbosity for each occurrence, debug
                        level is -vvv. (default: 0)
  --species {human,rat}
                        Use appropriate template for population (default:
                        human)

Options for filtering BIDS queries:
  --participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...], --participant_label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...], --participant-labels PARTICIPANT_LABEL [PARTICIPANT_LABEL ...], --participant_labels PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]
                        A space delimited list of participant identifiers or a
                        single identifier (the sub- prefix can be removed).
                        (default: None)
  --session-id [SESSION_ID ...]
                        Filter input dataset by session ID. (default: None)
  --run-id [RUN_ID ...]
                        Filter input dataset by run ID (only integer run IDs
                        are valid). (default: None)
  --task-id [TASK_ID ...]
                        Filter input dataset by task ID. (default: None)
  -m [MODALITIES ...], --modalities [MODALITIES ...]
                        Filter input dataset by MRI type. (default: None)
  --dsname DSNAME       A dataset name. (default: None)
  --bids-database-dir PATH
                        Path to an existing PyBIDS database folder, for faster
                        indexing (especially useful for large datasets).
                        (default: None)

Options to handle performance:
  --nprocs NPROCS, --n_procs NPROCS, --n_cpus NPROCS, -n-cpus NPROCS
                        Maximum number of simultaneously running parallel
                        processes executed by *MRIQC* (e.g., several instances
                        of ANTs' registration). However, when ``--nprocs`` is
                        greater or equal to the ``--omp-nthreads`` option, it
                        also sets the maximum number of threads that
                        simultaneously running processes may aggregate
                        (meaning, with ``--nprocs 16 --omp-nthreads 8`` a
                        maximum of two 8-CPU-threaded processes will be
                        running at a given time). Under this mode of
                        operation, ``--nprocs`` sets the maximum number of
                        processors that can be assigned work within an *MRIQC*
                        job, which includes all the processors used by
                        currently running single- and multi-threaded
                        processes. If ``None``, the number of CPUs available
                        will be automatically assigned (which may not be what
                        you want in, e.g., shared systems like a HPC cluster.
                        (default: None)
  --omp-nthreads OMP_NTHREADS, --ants-nthreads OMP_NTHREADS
                        Maximum number of threads that multi-threaded
                        processes executed by *MRIQC* (e.g., ANTs'
                        registration) can use. If ``None``, the number of CPUs
                        available will be automatically assigned (which may
                        not be what you want in, e.g., shared systems like a
                        HPC cluster. (default: None)
  --mem MEMORY_GB, --mem_gb MEMORY_GB, --mem-gb MEMORY_GB
                        Upper bound memory limit for MRIQC processes.
                        (default: None)
  --testing             Use testing settings for a minimal footprint.
                        (default: False)
  -f, --float32         Cast the input data to float32 if it's represented in
                        higher precision (saves space and improves
                        perfomance). (default: True)
  --pdb                 Open Python debugger (pdb) on exceptions. (default:
                        False)

Instrumental options:
  -w WORK_DIR, --work-dir WORK_DIR
                        Path where intermediate results should be stored.
                        (default: /home/jovyan/Git_repositories/example-
                        notebooks/books/workflows/work)
  --verbose-reports
  --write-graph         Write workflow graph. (default: False)
  --dry-run             Do not run the workflow. (default: False)
  --resource-monitor, --profile
                        Hook up the resource profiler callback to nipype.
                        (default: False)
  --use-plugin USE_PLUGIN
                        Nipype plugin configuration file. (default: None)
  --no-sub              Turn off submission of anonymized quality metrics to
                        MRIQC's metrics repository. (default: False)
  --email EMAIL         Email address to include with quality metric
                        submission. (default: )
  --webapi-url WEBAPI_URL
                        IP address where the MRIQC WebAPI is listening.
                        (default: None)
  --webapi-port WEBAPI_PORT
                        Port where the MRIQC WebAPI is listening. (default:
                        None)
  --upload-strict       Upload will fail if upload is strict. (default: False)

Specific settings for ANTs:
  --ants-float          Use float number precision on ANTs computations.
                        (default: False)
  --ants-settings ANTS_SETTINGS
                        Path to JSON file with settings for ANTs. (default:
                        None)

Functional MRI workflow configuration:
  --ica                 Run ICA on the raw data and include the components in
                        the individual reports (slow but potentially very
                        insightful). (default: False)
  --fft-spikes-detector
                        Turn on FFT based spike detector (slow). (default:
                        False)
  --fd_thres FD_THRES   Threshold on framewise displacement estimates to
                        detect outliers. (default: 0.2)
  --deoblique           Deoblique the functional scans during head motion
                        correction preprocessing. (default: False)
  --despike             Despike the functional scans during head motion
                        correction preprocessing. (default: False)
  --start-idx START_IDX
                        DEPRECATED Initial volume in functional timeseries
                        that should be considered for preprocessing. (default:
                        None)
  --stop-idx STOP_IDX   DEPRECATED Final volume in functional timeseries that
                        should be considered for preprocessing. (default:
                        None)

Data preparation

!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-01 sub-02 sub-03

Cloning:   0%|                             | 0.00/2.00 [00:00<?, ? candidates/s]
Enumerating: 0.00 Objects [00:00, ? Objects/s]
                                              
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[INFO   ] scanning for unlocked files (this may take some time)                 
[INFO   ] Remote origin not usable by git-annex; setting annex-ignore 
[INFO   ] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
| 		datalad siblings -d "/home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102" enable -s s3-PRIVATE 
install(ok): /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102 (dataset)
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get(ok): sub-03/anat/sub-03_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/anat/sub-02_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/anat/sub-01_T1w.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz (file) [from s3-PUBLIC...]
get(ok): sub-03 (directory)
get(ok): sub-02 (directory)
get(ok): sub-01 (directory)
action summary:
  get (ok: 12)

The following section outlines key MRIQC command-line options used in this analysis. These include required positional arguments for specifying input and output directories, as well as optional flags for performance optimization and report generation. For a complete list of available options, refer to the official documentation.

Positional Arguments

• bids_dir: The root folder of a BIDS valid dataset (sub-XXXXX folders should be found at the top level in this folder).

• output_dir: The directory where the output files should be stored. If you are running group level analysis this folder should be prepopulated with the results of the participant level analysis.

• analysis_level: Possible choices: participant, group

Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel) using the same output_dir.

• -v, --verbose: Increases log verbosity for each occurrence, debug level is -vvv.

Options to handle performance

• --nprocs, --n_procs, --n_cpus, -n-cpus Maximum number of simultaneously running parallel processes executed by MRIQC (e.g., several instances of ANTs’ registration). However, when –nprocs is greater or equal to the –omp-nthreads option, it also sets the maximum number of threads that simultaneously running processes may aggregate (meaning, with –nprocs 16 –omp-nthreads 8 a maximum of two 8-CPU-threaded processes will be running at a given time). Under this mode of operation, –nprocs sets the maximum number of processors that can be assigned work within an MRIQC job, which includes all the processors used by currently running single- and multi-threaded processes. If None, the number of CPUs available will be automatically assigned (which may not be what you want in, e.g., shared systems like a HPC cluster.

• --mem, --mem_gb, --mem-gb: Upper bound memory limit for MRIQC processes.

Instrumental options

• -w, --work-dir: Path where intermediate results should be stored.

• --verbose-reports: Generate verbose HTML reports with additional details

• --no-sub: Turn off submission of anonymized quality metrics to MRIQC’s metrics repository.

! Warning:

--no-sub and --notrack may be necessary in environments with limited internet access, where automatic submission of quality metrics to MRIQC's web server and tracking data to NiPreps developers may fail or trigger runtime errors.

Participant-level Analysis

%%bash

# Exit immediately if a command fails
set -e

# Set the number of threads for ITK (Image Processing Toolkit) to use
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=6
# Set the directory for matplotlib configuration to avoid conflicts
export MPLCONFIGDIR=~/matplotlib-mpldir

# Run MRIQC
mriqc ds000102 \
        MRIQC \
        participant \
        --participant-label sub-01 sub-02 sub-03 \
        --no-sub \
        --work-dir MRIQC_workdir \
        --nprocs 6 \
        --mem-gb 10 \
        --verbose-reports \
        -v

251031-06:41:21,92 cli IMPORTANT:
	 
    Running MRIQC version 22.0.6:
      * BIDS dataset path: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102.
      * Output folder: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC.
      * Analysis levels: ['participant'].

251031-06:41:51,502 nipype.workflow INFO:
	 Building functional MRIQC workflow for files: /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-01/func/sub-01_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-02/func/sub-02_task-flanker_run-2_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-1_bold.nii.gz, /home/jovyan/Git_repositories/example-notebooks/books/workflows/ds000102/sub-03/func/sub-03_task-flanker_run-2_bold.nii.gz.
251031-06:42:01,21 nipype.workflow INFO:
	 Building anatomical MRIQC workflow for 3 NIfTI files..
251031-06:42:15,840 nipype.workflow INFO:
	 Workflow mriqc_wf settings: ['check', 'execution', 'logging', 'monitoring']
251031-06:42:16,514 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datalad_get".
251031-06:42:16,515 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datalad_get".
251031-06:42:16,518 nipype.workflow INFO:
	 [Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
251031-06:42:16,519 nipype.workflow INFO:
	 [Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
251031-06:42:16,539 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.datalad_get" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datalad_get".
251031-06:42:16,543 nipype.workflow INFO:
	 [Node] Executing "datalad_get" <mriqc.interfaces.datalad.DataladIdentityInterface>
251031-06:42:16,548 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/metadata".
251031-06:42:16,553 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
251031-06:42:16,556 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:16,556 nipype.workflow INFO:
	 [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
251031-06:42:16,865 nipype.workflow INFO:
	 [Node] Finished "non_steady_state_detector", elapsed time 0.289438s.
251031-06:42:17,891 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 1.31509s.
251031-06:42:18,109 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/provenance".
251031-06:42:18,111 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:42:18,175 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.063392s.
251031-06:42:18,306 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/metadata".
251031-06:42:18,308 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
251031-06:42:18,309 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:18,310 nipype.workflow INFO:
	 [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
251031-06:42:18,596 nipype.workflow INFO:
	 [Node] Finished "non_steady_state_detector", elapsed time 0.28464s.
251031-06:42:19,148 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.838752s.
251031-06:42:19,287 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/provenance".
251031-06:42:19,289 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:42:19,354 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.063784s.
251031-06:42:19,616 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/metadata".
251031-06:42:19,617 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
251031-06:42:19,619 nipype.workflow INFO:
	 [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
251031-06:42:19,621 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:19,933 nipype.workflow INFO:
	 [Node] Finished "non_steady_state_detector", elapsed time 0.312312s.
251031-06:42:20,419 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.796632s.
251031-06:42:20,553 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/provenance".
251031-06:42:20,555 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:42:20,616 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.060442s.
251031-06:42:20,747 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/metadata".
251031-06:42:20,747 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
251031-06:42:20,748 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:20,749 nipype.workflow INFO:
	 [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
251031-06:42:21,45 nipype.workflow INFO:
	 [Node] Finished "non_steady_state_detector", elapsed time 0.294631s.
251031-06:42:21,549 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.799945s.
251031-06:42:21,684 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/provenance".
251031-06:42:21,686 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:42:21,763 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.076774s.
251031-06:42:21,903 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/non_steady_state_detector".
251031-06:42:21,904 nipype.workflow INFO:
	 [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
251031-06:42:22,58 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/metadata".
251031-06:42:22,59 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:22,199 nipype.workflow INFO:
	 [Node] Finished "non_steady_state_detector", elapsed time 0.293486s.
251031-06:42:22,826 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.765966s.
251031-06:42:22,965 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/provenance".
251031-06:42:22,967 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:42:23,55 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.087658s.
251031-06:42:23,186 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/metadata".
251031-06:42:23,187 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.non_steady_state_detector" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/non_steady_state_detector".
251031-06:42:23,188 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:23,188 nipype.workflow INFO:
	 [Node] Executing "non_steady_state_detector" <nipype.algorithms.confounds.NonSteadyStateDetector>
251031-06:42:23,481 nipype.workflow INFO:
	 [Node] Finished "non_steady_state_detector", elapsed time 0.291344s.
251031-06:42:23,985 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.795672s.
251031-06:42:24,116 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/provenance".
251031-06:42:24,118 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:42:24,186 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.067522s.
251031-06:42:24,318 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/sanitize".
251031-06:42:24,321 nipype.workflow INFO:
	 [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
251031-06:42:24,468 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/sanitize".
251031-06:42:24,475 nipype.workflow INFO:
	 [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
251031-06:42:24,485 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/sanitize".
251031-06:42:24,492 nipype.workflow INFO:
	 [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
251031-06:42:24,557 nipype.workflow INFO:
	 [Node] Finished "sanitize", elapsed time 0.07958s.
251031-06:42:26,9 nipype.workflow INFO:
	 [Node] Finished "sanitize", elapsed time 1.686934s.
251031-06:42:26,214 nipype.workflow INFO:
	 [Node] Finished "sanitize", elapsed time 1.719829s.
251031-06:42:26,543 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/sanitize".
251031-06:42:26,544 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/sanitize".
251031-06:42:26,544 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.sanitize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/sanitize".
251031-06:42:26,546 nipype.workflow INFO:
	 [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
251031-06:42:26,546 nipype.workflow INFO:
	 [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
251031-06:42:26,546 nipype.workflow INFO:
	 [Node] Executing "sanitize" <niworkflows.interfaces.header.SanitizeImage>
251031-06:42:26,601 nipype.workflow INFO:
	 [Node] Finished "sanitize", elapsed time 0.054728s.
251031-06:42:28,434 nipype.workflow INFO:
	 [Node] Finished "sanitize", elapsed time 1.886976s.
251031-06:42:28,477 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/motion_correct".
251031-06:42:28,481 nipype.workflow INFO:
	 [Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
251031-06:42:28,488 nipype.workflow INFO:
	 [Node] Finished "sanitize", elapsed time 1.941239s.
251031-06:42:30,463 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesMask".
251031-06:42:30,464 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/motion_correct".
251031-06:42:30,467 nipype.workflow INFO:
	 [Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
251031-06:42:30,467 nipype.workflow INFO:
	 [Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
251031-06:42:49,514 nipype.workflow INFO:
	 [Node] Finished "datalad_get", elapsed time 32.947225s.
251031-06:42:49,515 nipype.workflow INFO:
	 [Node] Finished "datalad_get", elapsed time 32.964702s.
251031-06:42:49,515 nipype.workflow INFO:
	 [Node] Finished "datalad_get", elapsed time 32.964962s.
251031-06:42:50,570 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/conform".
251031-06:42:50,570 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/metadata".
251031-06:42:50,571 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/conform".
251031-06:42:50,573 nipype.workflow INFO:
	 [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
251031-06:42:50,574 nipype.workflow INFO:
	 [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
251031-06:42:50,580 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:51,868 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 1.28749s.
251031-06:42:52,406 nipype.workflow INFO:
	 [Node] Finished "conform", elapsed time 1.825805s.
251031-06:42:52,412 nipype.workflow INFO:
	 [Node] Finished "conform", elapsed time 1.832294s.
251031-06:42:52,507 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/metadata".
251031-06:42:52,509 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:53,289 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.779209s.
251031-06:42:54,493 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.conform" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/conform".
251031-06:42:54,493 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.metadata" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/metadata".
251031-06:42:54,494 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_clip".
251031-06:42:54,495 nipype.workflow INFO:
	 [Node] Executing "conform" <mriqc.interfaces.common.conform_image.ConformImage>
251031-06:42:54,496 nipype.workflow INFO:
	 [Node] Executing "metadata" <niworkflows.interfaces.bids.ReadSidecarJSON>
251031-06:42:54,496 nipype.workflow INFO:
	 [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
251031-06:42:55,107 nipype.workflow INFO:
	 [Node] Finished "conform", elapsed time 0.610816s.
251031-06:42:55,347 nipype.workflow INFO:
	 [Node] Finished "metadata", elapsed time 0.85008s.
251031-06:42:56,498 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/RotationMask".
251031-06:42:56,498 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicNoise".
251031-06:42:56,500 nipype.workflow INFO:
	 [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
251031-06:42:56,500 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:43:00,587 nipype.workflow INFO:
	 [Node] Finished "RotationMask", elapsed time 4.08623s.
251031-06:43:02,516 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_clip".
251031-06:43:02,519 nipype.workflow INFO:
	 [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
251031-06:43:16,326 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 19.825105s.
251031-06:43:16,548 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/RotationMask".
251031-06:43:16,559 nipype.workflow INFO:
	 [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
251031-06:43:19,364 nipype.workflow INFO:
	 [Node] Finished "RotationMask", elapsed time 2.804602s.
251031-06:43:20,535 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicNoise".
251031-06:43:20,544 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:43:20,734 nipype.workflow INFO:
	 [Node] Finished "SpikesMask", elapsed time 50.265951s.
251031-06:43:22,544 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_clip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_clip".
251031-06:43:22,548 nipype.workflow INFO:
	 [Node] Executing "pre_clip" <niworkflows.interfaces.nibabel.IntensityClip>
251031-06:43:25,842 nipype.workflow INFO:
	 [Node] Finished "pre_clip", elapsed time 31.345209s.
251031-06:43:25,920 nipype.workflow INFO:
	 [Node] Finished "pre_clip", elapsed time 23.400496s.
251031-06:43:26,537 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.RotationMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/RotationMask".
251031-06:43:26,538 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicNoise".
251031-06:43:26,540 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:43:26,541 nipype.workflow INFO:
	 [Node] Executing "RotationMask" <mriqc.interfaces.anatomical.RotationMask>
251031-06:43:27,753 nipype.workflow INFO:
	 [Node] Finished "RotationMask", elapsed time 1.211417s.
251031-06:43:28,549 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesMask".
251031-06:43:28,552 nipype.workflow INFO:
	 [Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
251031-06:43:32,87 nipype.workflow INFO:
	 [Node] Finished "SpikesMask", elapsed time 3.533953s.
251031-06:43:32,550 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/motion_correct".
251031-06:43:32,553 nipype.workflow INFO:
	 [Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
251031-06:43:36,340 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 15.795152s.
251031-06:43:36,584 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesMask".
251031-06:43:36,587 nipype.workflow INFO:
	 [Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
251031-06:43:43,265 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 16.723522s.
251031-06:43:43,778 nipype.workflow INFO:
	 [Node] Finished "pre_clip", elapsed time 21.229384s.
251031-06:43:44,369 nipype.workflow INFO:
	 [Node] Finished "SpikesMask", elapsed time 7.781553s.
251031-06:43:44,569 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/motion_correct".
251031-06:43:44,570 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesMask".
251031-06:43:44,570 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/motion_correct".
251031-06:43:44,572 nipype.workflow INFO:
	 [Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
251031-06:43:44,573 nipype.workflow INFO:
	 [Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
251031-06:43:44,573 nipype.workflow INFO:
	 [Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
251031-06:43:46,927 nipype.workflow INFO:
	 [Node] Finished "SpikesMask", elapsed time 2.353509s.
251031-06:43:48,567 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesMask".
251031-06:43:48,570 nipype.workflow INFO:
	 [Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
251031-06:43:50,853 nipype.workflow INFO:
	 [Node] Finished "SpikesMask", elapsed time 2.28255s.
251031-06:43:52,567 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.motion_correct" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/motion_correct".
251031-06:43:52,571 nipype.workflow INFO:
	 [Node] Executing "motion_correct" <nipype.interfaces.afni.preprocess.Volreg>
251031-06:44:33,400 nipype.workflow INFO:
	 [Node] Finished "motion_correct", elapsed time 122.931524s.
251031-06:44:33,450 nipype.workflow INFO:
	 [Node] Finished "motion_correct", elapsed time 124.968061s.
251031-06:44:34,614 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesMask".
251031-06:44:34,616 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/pre_n4".
251031-06:44:34,617 nipype.workflow INFO:
	 [Node] Executing "SpikesMask" <nipype.interfaces.utility.wrappers.Function>
251031-06:44:34,619 nipype.workflow INFO:
	 [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:44:37,419 nipype.workflow INFO:
	 [Node] Finished "SpikesMask", elapsed time 2.800747s.
251031-06:44:38,627 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/pre_n4".
251031-06:44:38,629 nipype.workflow INFO:
	 [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:45:04,641 nipype.workflow INFO:
	 [Node] Finished "pre_n4", elapsed time 29.771831s.
251031-06:45:06,662 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.pre_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/pre_n4".
251031-06:45:06,664 nipype.workflow INFO:
	 [Node] Executing "pre_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:45:06,959 nipype.workflow INFO:
	 [Node] Finished "pre_n4", elapsed time 28.072635s.
251031-06:45:08,648 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeFD".
251031-06:45:08,651 nipype.workflow INFO:
	 [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
251031-06:45:08,655 nipype.workflow INFO:
	 [Node] Finished "ComputeFD", elapsed time 0.00336s.
251031-06:45:10,659 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/mean".
251031-06:45:10,662 nipype.workflow INFO:
	 [Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
251031-06:45:12,382 nipype.workflow INFO:
	 [Node] Finished "mean", elapsed time 1.7183950000000001s.
251031-06:45:12,657 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/compute_tsnr".
251031-06:45:12,660 nipype.workflow INFO:
	 [Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
251031-06:45:13,656 nipype.workflow INFO:
	 [Node] Finished "compute_tsnr", elapsed time 0.994569s.
251031-06:45:14,656 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/quality".
251031-06:45:14,659 nipype.workflow INFO:
	 [Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
251031-06:45:17,78 nipype.workflow INFO:
	 [Node] Finished "quality", elapsed time 2.417786s.
251031-06:45:18,661 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
251031-06:45:18,664 nipype.workflow INFO:
	 [Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
251031-06:45:19,457 nipype.workflow INFO:
	 [Node] Finished "SpikesFinderBgMask", elapsed time 0.791565s.
251031-06:45:20,665 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeFD".
251031-06:45:20,678 nipype.workflow INFO:
	 [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
251031-06:45:20,682 nipype.workflow INFO:
	 [Node] Finished "ComputeFD", elapsed time 0.003203s.
251031-06:45:22,668 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/mean".
251031-06:45:22,675 nipype.workflow INFO:
	 [Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
251031-06:45:23,574 nipype.workflow INFO:
	 [Node] Finished "mean", elapsed time 0.897119s.
251031-06:45:24,680 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/compute_tsnr".
251031-06:45:24,683 nipype.workflow INFO:
	 [Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
251031-06:45:25,653 nipype.workflow INFO:
	 [Node] Finished "compute_tsnr", elapsed time 0.968964s.
251031-06:45:26,579 nipype.workflow INFO:
	 [Node] Finished "motion_correct", elapsed time 114.024021s.
251031-06:45:26,668 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/quality".
251031-06:45:26,671 nipype.workflow INFO:
	 [Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
251031-06:45:28,303 nipype.workflow INFO:
	 [Node] Finished "quality", elapsed time 1.631596s.
251031-06:45:28,676 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
251031-06:45:28,679 nipype.workflow INFO:
	 [Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
251031-06:45:28,689 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeFD".
251031-06:45:28,692 nipype.workflow INFO:
	 [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
251031-06:45:28,696 nipype.workflow INFO:
	 [Node] Finished "ComputeFD", elapsed time 0.003261s.
251031-06:45:29,650 nipype.workflow INFO:
	 [Node] Finished "SpikesFinderBgMask", elapsed time 0.969659s.
251031-06:45:30,668 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/mean".
251031-06:45:30,668 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/compute_tsnr".
251031-06:45:30,671 nipype.workflow INFO:
	 [Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
251031-06:45:30,671 nipype.workflow INFO:
	 [Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
251031-06:45:31,528 nipype.workflow INFO:
	 [Node] Finished "compute_tsnr", elapsed time 0.855982s.
251031-06:45:31,550 nipype.workflow INFO:
	 [Node] Finished "mean", elapsed time 0.878487s.
251031-06:45:32,675 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/quality".
251031-06:45:32,676 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
251031-06:45:32,678 nipype.workflow INFO:
	 [Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
251031-06:45:32,679 nipype.workflow INFO:
	 [Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
251031-06:45:33,226 nipype.workflow INFO:
	 [Node] Finished "pre_n4", elapsed time 26.560205s.
251031-06:45:33,429 nipype.workflow INFO:
	 [Node] Finished "SpikesFinderBgMask", elapsed time 0.749302s.
251031-06:45:34,263 nipype.workflow INFO:
	 [Node] Finished "quality", elapsed time 1.583288s.
251031-06:45:34,677 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
251031-06:45:34,678 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SpikesFinderBgMask".
251031-06:45:34,678 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.SpikesFinderBgMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SpikesFinderBgMask".
251031-06:45:34,681 nipype.workflow INFO:
	 [Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
251031-06:45:34,681 nipype.workflow INFO:
	 [Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
251031-06:45:34,681 nipype.workflow INFO:
	 [Node] Executing "SpikesFinderBgMask" <mriqc.interfaces.functional.Spikes>
251031-06:45:35,531 nipype.workflow INFO:
	 [Node] Finished "SpikesFinderBgMask", elapsed time 0.848826s.
251031-06:45:35,661 nipype.workflow INFO:
	 [Node] Finished "SpikesFinderBgMask", elapsed time 0.978801s.
251031-06:45:35,706 nipype.workflow INFO:
	 [Node] Finished "SpikesFinderBgMask", elapsed time 1.024219s.
251031-06:45:36,675 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/synthstrip".
251031-06:45:36,676 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/synthstrip".
251031-06:45:36,676 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.synthstrip" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/synthstrip".
251031-06:45:36,678 nipype.workflow INFO:
	 [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
251031-06:45:36,678 nipype.workflow INFO:
	 [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
251031-06:45:36,679 nipype.workflow INFO:
	 [Node] Executing "synthstrip" <mriqc.interfaces.synthstrip.SynthStrip>
251031-06:45:46,3 nipype.workflow INFO:
	 [Node] Finished "motion_correct", elapsed time 121.428781s.
251031-06:45:46,720 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeFD".
251031-06:45:46,723 nipype.workflow INFO:
	 [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
251031-06:45:46,731 nipype.workflow INFO:
	 [Node] Finished "ComputeFD", elapsed time 0.006765s.
251031-06:45:47,32 nipype.workflow INFO:
	 [Node] Finished "motion_correct", elapsed time 122.457469s.
251031-06:45:48,686 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/mean".
251031-06:45:48,687 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/compute_tsnr".
251031-06:45:48,689 nipype.workflow INFO:
	 [Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
251031-06:45:48,690 nipype.workflow INFO:
	 [Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
251031-06:45:49,790 nipype.workflow INFO:
	 [Node] Finished "compute_tsnr", elapsed time 1.09928s.
251031-06:45:49,896 nipype.workflow INFO:
	 [Node] Finished "mean", elapsed time 1.205363s.
251031-06:45:50,699 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/quality".
251031-06:45:50,699 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeFD".
251031-06:45:50,702 nipype.workflow INFO:
	 [Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
251031-06:45:50,702 nipype.workflow INFO:
	 [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
251031-06:45:50,707 nipype.workflow INFO:
	 [Node] Finished "ComputeFD", elapsed time 0.003475s.
251031-06:45:52,60 nipype.workflow INFO:
	 [Node] Finished "motion_correct", elapsed time 119.488477s.
251031-06:45:52,701 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/mean".
251031-06:45:52,701 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/compute_tsnr".
251031-06:45:52,704 nipype.workflow INFO:
	 [Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
251031-06:45:52,704 nipype.workflow INFO:
	 [Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
251031-06:45:52,763 nipype.workflow INFO:
	 [Node] Finished "quality", elapsed time 2.059799s.
251031-06:45:53,632 nipype.workflow INFO:
	 [Node] Finished "compute_tsnr", elapsed time 0.926415s.
251031-06:45:53,775 nipype.workflow INFO:
	 [Node] Finished "mean", elapsed time 1.070199s.
251031-06:45:54,688 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/quality".
251031-06:45:54,688 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRI_HMC.ComputeFD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRI_HMC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeFD".
251031-06:45:54,688 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.mean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/mean".
251031-06:45:54,691 nipype.workflow INFO:
	 [Node] Executing "ComputeFD" <nipype.algorithms.confounds.FramewiseDisplacement>
251031-06:45:54,691 nipype.workflow INFO:
	 [Node] Executing "mean" <nipype.interfaces.afni.utils.TStat>
251031-06:45:54,692 nipype.workflow INFO:
	 [Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
251031-06:45:54,695 nipype.workflow INFO:
	 [Node] Finished "ComputeFD", elapsed time 0.0033s.
251031-06:45:55,719 nipype.workflow INFO:
	 [Node] Finished "mean", elapsed time 1.0266440000000001s.
251031-06:45:56,701 nipype.workflow INFO:
	 [Node] Finished "quality", elapsed time 2.008124s.
251031-06:45:56,704 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.compute_tsnr" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/compute_tsnr".
251031-06:45:56,705 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.quality" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/quality".
251031-06:45:56,707 nipype.workflow INFO:
	 [Node] Executing "compute_tsnr" <nipype.algorithms.confounds.TSNR>
251031-06:45:56,708 nipype.workflow INFO:
	 [Node] Executing "quality" <nipype.interfaces.afni.preprocess.QualityIndex>
251031-06:45:57,592 nipype.workflow INFO:
	 [Node] Finished "compute_tsnr", elapsed time 0.884315s.
251031-06:45:58,463 nipype.workflow INFO:
	 [Node] Finished "quality", elapsed time 1.7546620000000002s.
251031-06:45:58,698 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/afni_msk".
251031-06:45:58,698 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/SharpenEPI".
251031-06:45:58,699 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
251031-06:45:58,706 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
251031-06:45:58,707 nipype.workflow INFO:
	 [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:45:58,708 nipype.workflow INFO:
	 [Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
251031-06:46:00,36 nipype.workflow INFO:
	 [Node] Finished "SharpenEPI", elapsed time 1.072564s.
251031-06:46:00,573 nipype.workflow INFO:
	 [Node] Finished "afni_msk", elapsed time 1.864314s.
251031-06:46:00,727 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
251031-06:46:00,730 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:02,739 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
251031-06:46:02,743 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:03,323 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicMean", elapsed time 4.615889s.
251031-06:46:04,743 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/afni_msk".
251031-06:46:04,746 nipype.workflow INFO:
	 [Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
251031-06:46:05,442 nipype.workflow INFO:
	 [Node] Finished "afni_msk", elapsed time 0.695027s.
251031-06:46:05,636 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 4.905558s.
251031-06:46:06,739 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
251031-06:46:06,739 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/SharpenEPI".
251031-06:46:06,748 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:06,749 nipype.workflow INFO:
	 [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:46:07,366 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicSD", elapsed time 4.622271s.
251031-06:46:08,741 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
251031-06:46:08,744 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:08,809 nipype.workflow INFO:
	 [Node] Finished "SharpenEPI", elapsed time 1.434491s.
251031-06:46:10,755 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
251031-06:46:10,757 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:11,678 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicMean", elapsed time 4.929512s.
251031-06:46:12,725 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/afni_msk".
251031-06:46:12,728 nipype.workflow INFO:
	 [Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
251031-06:46:13,231 nipype.workflow INFO:
	 [Node] Finished "afni_msk", elapsed time 0.502395s.
251031-06:46:14,223 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 5.478363s.
251031-06:46:14,730 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/SharpenEPI".
251031-06:46:14,731 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
251031-06:46:14,733 nipype.workflow INFO:
	 [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:46:14,733 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:15,352 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicSD", elapsed time 4.593226s.
251031-06:46:15,947 nipype.workflow INFO:
	 [Node] Finished "SharpenEPI", elapsed time 1.212962s.
251031-06:46:16,714 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
251031-06:46:16,715 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
251031-06:46:16,717 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:16,717 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:19,358 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicMean", elapsed time 4.623341s.
251031-06:46:20,751 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/afni_msk".
251031-06:46:20,763 nipype.workflow INFO:
	 [Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
251031-06:46:21,500 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicSD", elapsed time 4.781563s.
251031-06:46:21,958 nipype.workflow INFO:
	 [Node] Finished "afni_msk", elapsed time 1.19407s.
251031-06:46:22,149 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 5.430759s.
251031-06:46:22,736 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/SharpenEPI".
251031-06:46:22,736 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
251031-06:46:22,737 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
251031-06:46:22,739 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:22,739 nipype.workflow INFO:
	 [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:46:22,740 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:24,109 nipype.workflow INFO:
	 [Node] Finished "SharpenEPI", elapsed time 1.368269s.
251031-06:46:24,743 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
251031-06:46:24,749 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:27,345 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 4.604023s.
251031-06:46:27,493 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicMean", elapsed time 4.746936s.
251031-06:46:28,761 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/afni_msk".
251031-06:46:28,762 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/SharpenEPI".
251031-06:46:28,764 nipype.workflow INFO:
	 [Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
251031-06:46:28,765 nipype.workflow INFO:
	 [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:46:29,700 nipype.workflow INFO:
	 [Node] Finished "afni_msk", elapsed time 0.93466s.
251031-06:46:29,956 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicSD", elapsed time 5.205941s.
251031-06:46:30,743 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicMean".
251031-06:46:30,743 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicNoise".
251031-06:46:30,746 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:30,747 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:31,970 nipype.workflow INFO:
	 [Node] Finished "SharpenEPI", elapsed time 1.981966s.
251031-06:46:32,756 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicSD".
251031-06:46:32,759 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:35,558 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicMean", elapsed time 4.809933s.
251031-06:46:36,144 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 5.397564s.
251031-06:46:36,920 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.fMRIBrainMask.afni_msk" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/fMRIBrainMask/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/afni_msk".
251031-06:46:36,927 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.SharpenEPI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/SharpenEPI".
251031-06:46:36,931 nipype.workflow INFO:
	 [Node] Executing "afni_msk" <nipype.interfaces.afni.preprocess.Automask>
251031-06:46:36,932 nipype.workflow INFO:
	 [Node] Executing "SharpenEPI" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:46:38,539 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicSD", elapsed time 5.775392s.
251031-06:46:38,761 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicMean" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicMean".
251031-06:46:38,775 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicMean" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:38,815 nipype.workflow INFO:
	 [Node] Finished "afni_msk", elapsed time 1.883319s.
251031-06:46:39,505 nipype.workflow INFO:
	 [Node] Finished "SharpenEPI", elapsed time 2.571012s.
251031-06:46:40,839 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicSD" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicSD".
251031-06:46:40,841 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicNoise" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicNoise".
251031-06:46:40,860 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicSD" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:40,860 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicNoise" <mriqc.interfaces.viz.PlotMosaic>
251031-06:46:45,273 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicMean", elapsed time 6.497017s.
251031-06:46:47,227 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
251031-06:46:47,249 nipype.workflow INFO:
	 [Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
251031-06:46:47,604 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicNoise", elapsed time 6.73831s.
251031-06:46:47,831 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicSD", elapsed time 6.966181s.
251031-06:46:48,834 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/smoothness".
251031-06:46:48,834 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/outliers".
251031-06:46:48,855 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:46:48,860 nipype.workflow INFO:
	 [Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
251031-06:46:51,996 nipype.workflow INFO:
	 [Node] Finished "outliers", elapsed time 3.134668s.
251031-06:46:52,775 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/gcor".
251031-06:46:52,780 nipype.workflow INFO:
	 [Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
251031-06:46:53,292 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 4.430995s.
251031-06:46:54,787 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dilated_mask".
251031-06:46:54,789 nipype.workflow INFO:
	 [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
251031-06:46:54,825 nipype.workflow INFO:
	 [Node] Finished "dilated_mask", elapsed time 0.034733s.
251031-06:46:56,755 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
251031-06:46:56,760 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:46:57,944 nipype.workflow INFO:
	 [Node] Finished "gcor", elapsed time 5.162624s.
251031-06:46:58,745 nipype.workflow INFO:
	 [Node] Finished "ComputeDVARS", elapsed time 11.488835s.
251031-06:46:58,814 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
251031-06:46:58,833 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:47:00,767 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/EPI2MNI".
251031-06:47:00,778 nipype.workflow INFO:
	 [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:47:06,59 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 9.289542s.
251031-06:47:06,681 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 7.841788s.
251031-06:47:06,981 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
251031-06:47:06,990 nipype.workflow INFO:
	 [Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
251031-06:47:08,795 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/smoothness".
251031-06:47:08,810 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:47:11,118 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 2.306731s.
251031-06:47:13,211 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/outliers".
251031-06:47:13,238 nipype.workflow INFO:
	 [Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
251031-06:47:16,864 nipype.workflow INFO:
	 [Node] Finished "ComputeDVARS", elapsed time 9.865851s.
251031-06:47:17,192 nipype.workflow INFO:
	 [Node] Finished "outliers", elapsed time 3.949074s.
251031-06:47:18,870 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/gcor".
251031-06:47:18,871 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dilated_mask".
251031-06:47:18,878 nipype.workflow INFO:
	 [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
251031-06:47:18,899 nipype.workflow INFO:
	 [Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
251031-06:47:18,959 nipype.workflow INFO:
	 [Node] Finished "dilated_mask", elapsed time 0.079606s.
251031-06:47:20,905 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
251031-06:47:20,913 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:47:25,83 nipype.workflow INFO:
	 [Node] Finished "gcor", elapsed time 6.182449s.
251031-06:47:27,55 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
251031-06:47:27,59 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:47:29,33 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 8.118419s.
251031-06:47:30,808 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/EPI2MNI".
251031-06:47:30,812 nipype.workflow INFO:
	 [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:47:32,711 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 5.651664s.
251031-06:47:34,826 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
251031-06:47:34,830 nipype.workflow INFO:
	 [Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
251031-06:47:41,161 nipype.workflow INFO:
	 [Node] Finished "ComputeDVARS", elapsed time 6.329902s.
251031-06:47:42,884 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/smoothness".
251031-06:47:42,889 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:47:44,928 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 2.037951s.
251031-06:47:46,895 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/outliers".
251031-06:47:46,903 nipype.workflow INFO:
	 [Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
251031-06:47:52,671 nipype.workflow INFO:
	 [Node] Finished "outliers", elapsed time 5.766724s.
251031-06:47:55,261 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/gcor".
251031-06:47:55,287 nipype.workflow INFO:
	 [Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
251031-06:48:06,4 nipype.workflow INFO:
	 [Node] Finished "gcor", elapsed time 10.700604s.
251031-06:48:07,123 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dilated_mask".
251031-06:48:07,144 nipype.workflow INFO:
	 [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
251031-06:48:07,229 nipype.workflow INFO:
	 [Node] Finished "dilated_mask", elapsed time 0.076371s.
251031-06:48:08,923 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
251031-06:48:08,927 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:48:19,530 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 10.601463s.
251031-06:48:20,939 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
251031-06:48:20,943 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:48:26,101 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 5.157482s.
251031-06:48:26,898 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/EPI2MNI".
251031-06:48:26,902 nipype.workflow INFO:
	 [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:48:50,174 nipype.workflow INFO:
	 [Node] Finished "synthstrip", elapsed time 193.494458s.
251031-06:48:50,228 nipype.workflow INFO:
	 [Node] Finished "synthstrip", elapsed time 193.54791s.
251031-06:48:50,932 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/post_n4".
251031-06:48:50,932 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/smoothness".
251031-06:48:50,936 nipype.workflow INFO:
	 [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:48:50,936 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:48:52,238 nipype.workflow INFO:
	 [Node] Finished "synthstrip", elapsed time 195.558498s.
251031-06:48:52,948 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotMosaicZoomed".
251031-06:48:52,951 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:49:01,971 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 11.033493s.
251031-06:49:02,959 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotBrainmask".
251031-06:49:02,964 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:49:08,148 nipype.workflow INFO:
	 [Node] Finished "post_n4", elapsed time 17.211343s.
251031-06:49:08,329 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 5.364204s.
251031-06:49:08,490 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 15.538166s.
251031-06:49:08,943 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/post_n4".
251031-06:49:08,943 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/smoothness".
251031-06:49:08,944 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotMosaicZoomed".
251031-06:49:08,946 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:49:08,946 nipype.workflow INFO:
	 [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:49:08,947 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:49:14,141 nipype.workflow INFO:
	 [Node] Finished "EPI2MNI", elapsed time 103.327704s.
251031-06:49:14,977 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotBrainmask".
251031-06:49:14,982 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:49:15,768 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 6.820635s.
251031-06:49:16,959 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.post_n4" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/post_n4".
251031-06:49:16,962 nipype.workflow INFO:
	 [Node] Executing "post_n4" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
251031-06:49:22,676 nipype.workflow INFO:
	 [Node] Finished "post_n4", elapsed time 13.729041s.
251031-06:49:22,955 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/smoothness".
251031-06:49:22,959 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:49:23,984 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 9.001243s.
251031-06:49:24,309 nipype.workflow INFO:
	 [Node] Finished "EPI2MNI", elapsed time 143.5295s.
251031-06:49:24,797 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 15.849321s.
251031-06:49:25,2 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotMosaicZoomed".
251031-06:49:25,3 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotBrainmask".
251031-06:49:25,7 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
251031-06:49:25,7 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:49:25,13 nipype.workflow INFO:
	 [Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
251031-06:49:25,15 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:49:31,344 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 8.384291s.
251031-06:49:32,980 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/smoothness".
251031-06:49:32,984 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:49:33,759 nipype.workflow INFO:
	 [Node] Finished "post_n4", elapsed time 16.53166s.
251031-06:49:33,775 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 0.789839s.
251031-06:49:34,471 nipype.workflow INFO:
	 [Node] Finished "ComputeDVARS", elapsed time 9.456638s.
251031-06:49:34,973 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/outliers".
251031-06:49:34,973 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/gcor".
251031-06:49:34,973 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dilated_mask".
251031-06:49:34,975 nipype.workflow INFO:
	 [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
251031-06:49:34,976 nipype.workflow INFO:
	 [Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
251031-06:49:34,977 nipype.workflow INFO:
	 [Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
251031-06:49:35,139 nipype.workflow INFO:
	 [Node] Finished "dilated_mask", elapsed time 0.163006s.
251031-06:49:36,29 nipype.workflow INFO:
	 [Node] Finished "outliers", elapsed time 1.052003s.
251031-06:49:36,700 nipype.workflow INFO:
	 [Node] Finished "gcor", elapsed time 1.7221060000000001s.
251031-06:49:36,970 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
251031-06:49:36,971 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
251031-06:49:36,972 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/EPI2MNI".
251031-06:49:36,974 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:49:36,974 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:49:36,984 nipype.workflow INFO:
	 [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:49:41,414 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 16.40486s.
251031-06:49:41,690 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 4.714753s.
251031-06:49:43,100 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ComputeDVARS".
251031-06:49:43,101 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/smoothness".
251031-06:49:43,104 nipype.workflow INFO:
	 [Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
251031-06:49:43,104 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:49:43,574 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 6.597925s.
251031-06:49:43,901 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 18.883956s.
251031-06:49:43,987 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 0.881504s.
251031-06:49:45,27 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/outliers".
251031-06:49:45,27 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/gcor".
251031-06:49:45,27 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dilated_mask".
251031-06:49:45,30 nipype.workflow INFO:
	 [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
251031-06:49:45,30 nipype.workflow INFO:
	 [Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
251031-06:49:45,30 nipype.workflow INFO:
	 [Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
251031-06:49:45,52 nipype.workflow INFO:
	 [Node] Finished "dilated_mask", elapsed time 0.020855s.
251031-06:49:46,637 nipype.workflow INFO:
	 [Node] Finished "outliers", elapsed time 1.6058270000000001s.
251031-06:49:47,30 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotBrainmask".
251031-06:49:47,30 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/PlotMosaicZoomed".
251031-06:49:47,35 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:49:47,35 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:49:47,654 nipype.workflow INFO:
	 [Node] Finished "gcor", elapsed time 2.622344s.
251031-06:49:48,994 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/EPI2MNI".
251031-06:49:48,998 nipype.workflow INFO:
	 [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:49:49,352 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 2.315903s.
251031-06:49:49,401 nipype.workflow INFO:
	 [Node] Finished "ComputeDVARS", elapsed time 6.295853s.
251031-06:49:51,32 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.ComputeDVARS" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ComputeDVARS".
251031-06:49:51,33 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.smoothness" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/smoothness".
251031-06:49:51,36 nipype.workflow INFO:
	 [Node] Executing "smoothness" <nipype.interfaces.afni.utils.FWHMx>
251031-06:49:51,37 nipype.workflow INFO:
	 [Node] Executing "ComputeDVARS" <nipype.algorithms.confounds.ComputeDVARS>
251031-06:49:51,412 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 4.375717s.
251031-06:49:53,13 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.outliers" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/outliers".
251031-06:49:53,19 nipype.workflow INFO:
	 [Node] Executing "outliers" <nipype.interfaces.afni.preprocess.OutlierCount>
251031-06:49:53,27 nipype.workflow INFO:
	 [Node] Finished "smoothness", elapsed time 1.9893420000000002s.
251031-06:49:54,765 nipype.workflow INFO:
	 [Node] Finished "outliers", elapsed time 1.743924s.
251031-06:49:55,213 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.gcor" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/gcor".
251031-06:49:55,214 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dilated_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dilated_mask".
251031-06:49:55,240 nipype.workflow INFO:
	 [Node] Executing "gcor" <mriqc.interfaces.transitional.GCOR>
251031-06:49:55,242 nipype.workflow INFO:
	 [Node] Executing "dilated_mask" <niworkflows.interfaces.morphology.BinaryDilation>
251031-06:49:55,257 nipype.workflow INFO:
	 [Node] Finished "EPI2MNI", elapsed time 88.353502s.
251031-06:49:55,325 nipype.workflow INFO:
	 [Node] Finished "dilated_mask", elapsed time 0.081514s.
251031-06:49:57,391 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotBrainmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotBrainmask".
251031-06:49:57,395 nipype.workflow INFO:
	 [Node] Executing "PlotBrainmask" <mriqc.interfaces.viz.PlotContours>
251031-06:49:57,396 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.PlotMosaicZoomed" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/PlotMosaicZoomed".
251031-06:49:57,400 nipype.workflow INFO:
	 [Node] Executing "PlotMosaicZoomed" <mriqc.interfaces.viz.PlotMosaic>
251031-06:49:58,797 nipype.workflow INFO:
	 [Node] Finished "ComputeDVARS", elapsed time 7.753878s.
251031-06:49:59,315 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.EPI2MNI" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/EPI2MNI".
251031-06:49:59,321 nipype.workflow INFO:
	 [Node] Executing "EPI2MNI" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:50:01,542 nipype.workflow INFO:
	 [Node] Finished "gcor", elapsed time 6.290134s.
251031-06:50:03,35 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_inu".
251031-06:50:03,46 nipype.workflow INFO:
	 [Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
251031-06:50:03,430 nipype.workflow INFO:
	 [Node] Finished "PlotMosaicZoomed", elapsed time 6.028571s.
251031-06:50:04,515 nipype.workflow INFO:
	 [Node] Finished "final_inu", elapsed time 1.467596s.
251031-06:50:05,53 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/final_masked".
251031-06:50:05,54 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/fsl_bet".
251031-06:50:05,56 nipype.workflow INFO:
	 [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
251031-06:50:05,57 nipype.workflow INFO:
	 [Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
251031-06:50:05,830 nipype.workflow INFO:
	 [Node] Finished "final_masked", elapsed time 0.773559s.
251031-06:50:07,25 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_inu".
251031-06:50:07,29 nipype.workflow INFO:
	 [Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
251031-06:50:08,284 nipype.workflow INFO:
	 [Node] Finished "final_inu", elapsed time 1.2534100000000001s.
251031-06:50:08,335 nipype.workflow INFO:
	 [Node] Finished "PlotBrainmask", elapsed time 10.938729s.
251031-06:50:09,46 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/fsl_bet".
251031-06:50:09,46 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/final_masked".
251031-06:50:09,50 nipype.workflow INFO:
	 [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
251031-06:50:09,59 nipype.workflow INFO:
	 [Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
251031-06:50:09,901 nipype.workflow INFO:
	 [Node] Finished "final_masked", elapsed time 0.849394s.
251031-06:50:11,44 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_inu" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_inu".
251031-06:50:11,48 nipype.workflow INFO:
	 [Node] Executing "final_inu" <nipype.interfaces.utility.wrappers.Function>
251031-06:50:12,278 nipype.workflow INFO:
	 [Node] Finished "final_inu", elapsed time 1.228816s.
251031-06:50:13,7 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.synthstrip_wf.final_masked" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/synthstrip_wf/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/final_masked".
251031-06:50:13,11 nipype.workflow INFO:
	 [Node] Executing "final_masked" <niworkflows.interfaces.nibabel.ApplyMask>
251031-06:50:13,854 nipype.workflow INFO:
	 [Node] Finished "final_masked", elapsed time 0.83421s.
251031-06:50:15,29 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.HeadMaskWorkflow.fsl_bet" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/HeadMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/fsl_bet".
251031-06:50:15,35 nipype.workflow INFO:
	 [Node] Executing "fsl_bet" <nipype.interfaces.fsl.preprocess.BET>
251031-06:50:38,530 nipype.workflow INFO:
	 [Node] Finished "EPI2MNI", elapsed time 61.544471s.
251031-06:50:39,70 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/SpatialNormalization".
251031-06:50:39,76 nipype.workflow INFO:
	 [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:51:05,532 nipype.workflow INFO:
	 [Node] Finished "EPI2MNI", elapsed time 66.205269s.
251031-06:51:07,95 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/SpatialNormalization".
251031-06:51:07,100 nipype.workflow INFO:
	 [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:51:17,33 nipype.workflow INFO:
	 [Node] Finished "EPI2MNI", elapsed time 88.0326s.
251031-06:51:19,97 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.SpatialNormalization.SpatialNormalization" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/SpatialNormalization".
251031-06:51:19,110 nipype.workflow INFO:
	 [Node] Executing "SpatialNormalization" <niworkflows.interfaces.reportlets.registration.SpatialNormalizationRPT>
251031-06:51:30,643 nipype.workflow INFO:
	 [Node] Finished "fsl_bet", elapsed time 81.579843s.
251031-06:51:31,136 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/measures".
251031-06:51:31,143 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
251031-06:51:33,144 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 1.999003s.
251031-06:51:35,145 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/subtract_mask".
251031-06:51:35,149 nipype.workflow INFO:
	 [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
251031-06:51:35,169 nipype.workflow INFO:
	 [Node] Finished "subtract_mask", elapsed time 0.018192s.
251031-06:51:37,180 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
251031-06:51:37,184 nipype.workflow INFO:
	 [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:37,722 nipype.workflow INFO:
	 [Node] Finished "SpatialNormalization", elapsed time 58.642776s.
251031-06:51:38,485 nipype.workflow INFO:
	 [Node] Finished "fsl_bet", elapsed time 93.426975s.
251031-06:51:39,114 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/measures".
251031-06:51:39,115 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/subtract_mask".
251031-06:51:39,119 nipype.workflow INFO:
	 [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
251031-06:51:39,121 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
251031-06:51:39,160 nipype.workflow INFO:
	 [Node] Finished "subtract_mask", elapsed time 0.039431s.
251031-06:51:39,823 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 0.701126s.
251031-06:51:41,116 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
251031-06:51:41,120 nipype.workflow INFO:
	 [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:41,129 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/measures".
251031-06:51:41,135 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
251031-06:51:41,168 nipype.workflow INFO:
	 [Node] Finished "ResampleSegmentation", elapsed time 3.982827s.
251031-06:51:41,800 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 0.662309s.
251031-06:51:43,24 nipype.workflow INFO:
	 [Node] Finished "ResampleSegmentation", elapsed time 1.9028209999999999s.
251031-06:51:43,145 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/subtract_mask".
251031-06:51:43,148 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
251031-06:51:43,149 nipype.workflow INFO:
	 [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
251031-06:51:43,158 nipype.workflow INFO:
	 [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:43,172 nipype.workflow INFO:
	 [Node] Finished "subtract_mask", elapsed time 0.02233s.
251031-06:51:43,865 nipype.workflow INFO:
	 [Node] Finished "ResampleSegmentation", elapsed time 0.702898s.
251031-06:51:45,119 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/subtract_mask".
251031-06:51:45,119 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/measures".
251031-06:51:45,129 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
251031-06:51:45,137 nipype.workflow INFO:
	 [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
251031-06:51:45,139 nipype.workflow INFO:
	 [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:45,141 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
251031-06:51:45,153 nipype.workflow INFO:
	 [Node] Finished "subtract_mask", elapsed time 0.015585s.
251031-06:51:45,744 nipype.workflow INFO:
	 [Node] Finished "ResampleSegmentation", elapsed time 0.603967s.
251031-06:51:45,791 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 0.64993s.
251031-06:51:46,982 nipype.workflow INFO:
	 [Node] Finished "fsl_bet", elapsed time 91.94576s.
251031-06:51:47,131 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/measures".
251031-06:51:47,132 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/subtract_mask".
251031-06:51:47,133 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/ResampleSegmentation".
251031-06:51:47,136 nipype.workflow INFO:
	 [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
251031-06:51:47,138 nipype.workflow INFO:
	 [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:47,140 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
251031-06:51:47,159 nipype.workflow INFO:
	 [Node] Finished "subtract_mask", elapsed time 0.022856s.
251031-06:51:47,738 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 0.596839s.
251031-06:51:48,850 nipype.workflow INFO:
	 [Node] Finished "ResampleSegmentation", elapsed time 1.710648s.
251031-06:51:49,133 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/measures".
251031-06:51:49,133 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.subtract_mask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/subtract_mask".
251031-06:51:49,134 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.SpatialNormalization.ResampleSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/SpatialNormalization/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/ResampleSegmentation".
251031-06:51:49,135 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/invert_xfm".
251031-06:51:49,136 nipype.workflow INFO:
	 [Node] Executing "subtract_mask" <niworkflows.interfaces.morphology.BinarySubtraction>
251031-06:51:49,138 nipype.workflow INFO:
	 [Node] Executing "ResampleSegmentation" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:49,140 nipype.workflow INFO:
	 [Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:51:49,141 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.functional.FunctionalQC>
251031-06:51:49,153 nipype.workflow INFO:
	 [Node] Finished "subtract_mask", elapsed time 0.015861s.
251031-06:51:49,769 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 0.626261s.
251031-06:51:50,808 nipype.workflow INFO:
	 [Node] Finished "ResampleSegmentation", elapsed time 1.6676090000000001s.
251031-06:51:51,127 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotHeadmask".
251031-06:51:51,128 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotHeadmask".
251031-06:51:51,129 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotHeadmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotHeadmask".
251031-06:51:51,131 nipype.workflow INFO:
	 [Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
251031-06:51:51,131 nipype.workflow INFO:
	 [Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
251031-06:51:51,133 nipype.workflow INFO:
	 [Node] Executing "PlotHeadmask" <mriqc.interfaces.viz.PlotContours>
251031-06:51:57,930 nipype.workflow INFO:
	 [Node] Finished "PlotHeadmask", elapsed time 6.798388s.
251031-06:51:59,569 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/datasink".
251031-06:51:59,623 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:51:59,627 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.001763s.
251031-06:52:00,76 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/parcels".
251031-06:52:00,85 nipype.workflow INFO:
	 [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
251031-06:52:00,185 nipype.workflow INFO:
	 [Node] Finished "parcels", elapsed time 0.09543s.
251031-06:52:01,419 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/datasink".
251031-06:52:01,465 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:52:01,467 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.001079s.
251031-06:52:01,742 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/parcels".
251031-06:52:01,746 nipype.workflow INFO:
	 [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
251031-06:52:01,816 nipype.workflow INFO:
	 [Node] Finished "parcels", elapsed time 0.069758s.
251031-06:52:03,192 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/datasink".
251031-06:52:03,203 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:52:03,205 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.00087s.
251031-06:52:03,409 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/parcels".
251031-06:52:03,412 nipype.workflow INFO:
	 [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
251031-06:52:03,434 nipype.workflow INFO:
	 [Node] Finished "parcels", elapsed time 0.020905s.
251031-06:52:03,878 nipype.workflow INFO:
	 [Node] Finished "PlotHeadmask", elapsed time 12.745767s.
251031-06:52:05,157 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/datasink".
251031-06:52:05,167 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:52:05,168 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.000736s.
251031-06:52:05,322 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/datasink".
251031-06:52:05,322 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/parcels".
251031-06:52:05,326 nipype.workflow INFO:
	 [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
251031-06:52:05,334 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:52:05,336 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.001381s.
251031-06:52:05,352 nipype.workflow INFO:
	 [Node] Finished "parcels", elapsed time 0.024475s.
251031-06:52:05,495 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/parcels".
251031-06:52:05,498 nipype.workflow INFO:
	 [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
251031-06:52:05,521 nipype.workflow INFO:
	 [Node] Finished "parcels", elapsed time 0.021834s.
251031-06:52:07,281 nipype.workflow INFO:
	 [Node] Finished "PlotHeadmask", elapsed time 16.147282s.
251031-06:52:07,343 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/datasink".
251031-06:52:07,359 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:52:07,361 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.000733s.
251031-06:52:07,552 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.parcels" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/parcels".
251031-06:52:07,552 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/BigPlot".
251031-06:52:07,555 nipype.workflow INFO:
	 [Node] Executing "parcels" <nipype.interfaces.utility.wrappers.Function>
251031-06:52:07,559 nipype.workflow INFO:
	 [Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
251031-06:52:07,576 nipype.workflow INFO:
	 [Node] Finished "parcels", elapsed time 0.020578s.
251031-06:52:09,184 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/BigPlot".
251031-06:52:09,185 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/BigPlot".
251031-06:52:09,191 nipype.workflow INFO:
	 [Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
251031-06:52:09,192 nipype.workflow INFO:
	 [Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
251031-06:52:09,756 nipype.workflow INFO:
	 [Node] Finished "SpatialNormalization", elapsed time 62.652976s.
251031-06:52:10,652 nipype.workflow INFO:
	 [Node] Finished "BigPlot", elapsed time 3.092159s.
251031-06:52:10,943 nipype.workflow INFO:
	 [Node] Finished "BigPlot", elapsed time 1.749509s.
251031-06:52:11,212 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/segmentation".
251031-06:52:11,213 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/invert_xfm".
251031-06:52:11,216 nipype.workflow INFO:
	 [Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:11,219 nipype.workflow INFO:
	 [Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
251031-06:52:11,232 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/BigPlot".
251031-06:52:11,250 nipype.workflow INFO:
	 [Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
251031-06:52:11,487 nipype.workflow INFO:
	 [Node] Finished "BigPlot", elapsed time 2.295009s.
251031-06:52:12,854 nipype.workflow INFO:
	 [Node] Finished "invert_xfm", elapsed time 23.713088s.
251031-06:52:13,153 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ArtifactMask".
251031-06:52:13,155 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/BigPlot".
251031-06:52:13,158 nipype.workflow INFO:
	 [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
251031-06:52:13,159 nipype.workflow INFO:
	 [Node] Finished "BigPlot", elapsed time 1.907854s.
251031-06:52:13,162 nipype.workflow INFO:
	 [Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
251031-06:52:15,196 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.BigPlot" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/BigPlot".
251031-06:52:15,205 nipype.workflow INFO:
	 [Node] Executing "BigPlot" <niworkflows.interfaces.plotting.FMRISummary>
251031-06:52:15,633 nipype.workflow INFO:
	 [Node] Finished "BigPlot", elapsed time 2.470386s.
251031-06:52:17,150 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/MergePlots".
251031-06:52:17,165 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:52:17,167 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000428s.
251031-06:52:17,369 nipype.workflow INFO:
	 [Node] Finished "BigPlot", elapsed time 2.16242s.
251031-06:52:18,809 nipype.workflow INFO:
	 [Node] Finished "ArtifactMask", elapsed time 5.649294s.
251031-06:52:19,146 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/provenance".
251031-06:52:19,150 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:52:19,388 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.237185s.
251031-06:52:19,540 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/ComputeQI2".
251031-06:52:19,541 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotAirmask".
251031-06:52:19,543 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotArtmask".
251031-06:52:19,543 nipype.workflow INFO:
	 [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
251031-06:52:19,544 nipype.workflow INFO:
	 [Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
251031-06:52:19,546 nipype.workflow INFO:
	 [Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
251031-06:52:24,129 nipype.workflow INFO:
	 [Node] Finished "PlotAirmask", elapsed time 4.584007s.
251031-06:52:25,165 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/MergePlots".
251031-06:52:25,171 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:52:25,172 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000267s.
251031-06:52:27,206 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/MergePlots".
251031-06:52:27,212 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:52:27,213 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.00022s.
251031-06:52:29,433 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/MergePlots".
251031-06:52:29,439 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:52:29,440 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000227s.
251031-06:52:31,78 nipype.workflow INFO:
	 [Node] Finished "PlotArtmask", elapsed time 11.530886s.
251031-06:52:31,452 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/MergePlots".
251031-06:52:31,463 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:52:31,464 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000233s.
251031-06:52:33,235 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/MergePlots".
251031-06:52:33,245 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport".
251031-06:52:33,302 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:52:33,318 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:52:33,326 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000375s.
251031-06:52:33,482 nipype.workflow INFO:
	 [Node] Finished "invert_xfm", elapsed time 22.264526s.
251031-06:52:34,46 cli WARNING:
	 Building bold report: no exclude index was found
251031-06:52:35,161 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ArtifactMask".
251031-06:52:35,163 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport".
251031-06:52:35,181 nipype.workflow INFO:
	 [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
251031-06:52:35,195 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:52:35,199 cli WARNING:
	 Building bold report: no exclude index was found
251031-06:52:36,820 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-1_bold.html
251031-06:52:36,821 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 3.510965s.
251031-06:52:36,826 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-01_task-flanker_run-2_bold.html
251031-06:52:36,827 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 1.630279s.
251031-06:52:37,176 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport".
251031-06:52:37,176 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport".
251031-06:52:37,187 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:52:37,188 cli WARNING:
	 Building bold report: no exclude index was found
251031-06:52:37,223 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:52:37,225 cli WARNING:
	 Building bold report: no exclude index was found
251031-06:52:37,258 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-1_bold.html
251031-06:52:37,259 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.071429s.
251031-06:52:37,275 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-02_task-flanker_run-2_bold.html
251031-06:52:37,277 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.051508s.
251031-06:52:37,831 nipype.workflow INFO:
	 [Node] Finished "ComputeQI2", elapsed time 18.28651s.
251031-06:52:39,171 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-1_bold.nii.gz/dsplots".
251031-06:52:39,171 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport".
251031-06:52:39,172 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport".
251031-06:52:39,175 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:52:39,175 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:52:39,176 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000566s.
251031-06:52:39,176 cli WARNING:
	 Building bold report: no exclude index was found
251031-06:52:39,178 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:52:39,180 cli WARNING:
	 Building bold report: no exclude index was found
251031-06:52:39,209 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-1_bold.html
251031-06:52:39,210 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.033877s.
251031-06:52:39,225 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/GenerateReport/sub-03_task-flanker_run-2_bold.html
251031-06:52:39,226 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.046727s.
251031-06:52:39,332 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..func..sub-01_task-flanker_run-2_bold.nii.gz/dsplots".
251031-06:52:39,349 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:52:39,350 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.00047s.
251031-06:52:39,532 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-1_bold.nii.gz/dsplots".
251031-06:52:39,536 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:52:39,537 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000437s.
251031-06:52:39,707 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..func..sub-02_task-flanker_run-2_bold.nii.gz/dsplots".
251031-06:52:39,726 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:52:39,727 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000483s.
251031-06:52:39,907 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
251031-06:52:39,910 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:41,14 nipype.workflow INFO:
	 [Node] Finished "ArtifactMask", elapsed time 5.832241s.
251031-06:52:41,167 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-1_bold.nii.gz/dsplots".
251031-06:52:41,170 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:52:41,172 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000419s.
251031-06:52:41,316 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.funcMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/funcMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..func..sub-03_task-flanker_run-2_bold.nii.gz/dsplots".
251031-06:52:41,319 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:52:41,320 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000395s.
251031-06:52:41,541 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
251031-06:52:41,541 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
251031-06:52:41,543 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:41,544 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:43,170 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/provenance".
251031-06:52:43,174 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:52:45,551 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t10", elapsed time 5.572838s.
251031-06:52:45,930 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 2.7546939999999998s.
251031-06:52:46,73 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t11", elapsed time 4.529584s.
251031-06:52:46,308 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/ComputeQI2".
251031-06:52:46,310 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotAirmask".
251031-06:52:46,312 nipype.workflow INFO:
	 [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
251031-06:52:46,314 nipype.workflow INFO:
	 [Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
251031-06:52:47,687 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t12", elapsed time 6.14268s.
251031-06:52:48,100 nipype.workflow INFO:
	 [Node] Finished "SpatialNormalization", elapsed time 88.988547s.
251031-06:52:48,287 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.invert_xfm" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/invert_xfm".
251031-06:52:48,290 nipype.workflow INFO:
	 [Node] Executing "invert_xfm" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:48,291 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
251031-06:52:48,292 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t10" - collecting precomputed outputs
251031-06:52:48,292 nipype.workflow INFO:
	 [Node] "_MNItpms2t10" found cached.
251031-06:52:48,293 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
251031-06:52:48,294 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t11" - collecting precomputed outputs
251031-06:52:48,294 nipype.workflow INFO:
	 [Node] "_MNItpms2t11" found cached.
251031-06:52:48,295 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
251031-06:52:48,302 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t12" - collecting precomputed outputs
251031-06:52:48,301 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotArtmask".
251031-06:52:48,302 nipype.workflow INFO:
	 [Node] "_MNItpms2t12" found cached.
251031-06:52:48,307 nipype.workflow INFO:
	 [Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
251031-06:52:50,285 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
251031-06:52:50,292 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:51,442 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t10", elapsed time 1.146944s.
251031-06:52:52,275 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
251031-06:52:52,280 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:53,436 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t11", elapsed time 1.155071s.
251031-06:52:54,286 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
251031-06:52:54,289 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:55,437 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t12", elapsed time 1.146697s.
251031-06:52:56,295 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
251031-06:52:56,297 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t10" - collecting precomputed outputs
251031-06:52:56,297 nipype.workflow INFO:
	 [Node] "_MNItpms2t10" found cached.
251031-06:52:56,298 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
251031-06:52:56,299 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t11" - collecting precomputed outputs
251031-06:52:56,299 nipype.workflow INFO:
	 [Node] "_MNItpms2t11" found cached.
251031-06:52:56,300 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
251031-06:52:56,301 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t12" - collecting precomputed outputs
251031-06:52:56,301 nipype.workflow INFO:
	 [Node] "_MNItpms2t12" found cached.
251031-06:52:56,931 nipype.workflow INFO:
	 [Node] Finished "PlotAirmask", elapsed time 10.615982s.
251031-06:52:58,281 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
251031-06:52:58,282 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
251031-06:52:58,284 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t10" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:58,285 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t11" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:52:58,434 nipype.workflow INFO:
	 [Node] Finished "PlotArtmask", elapsed time 10.125578s.
251031-06:52:59,443 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t10", elapsed time 1.15778s.
251031-06:53:00,316 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
251031-06:53:00,318 nipype.workflow INFO:
	 [Node] Executing "_MNItpms2t12" <nipype.interfaces.ants.resampling.ApplyTransforms>
251031-06:53:00,589 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t11", elapsed time 2.302397s.
251031-06:53:01,854 nipype.workflow INFO:
	 [Node] Finished "ComputeQI2", elapsed time 15.541054s.
251031-06:53:02,304 nipype.workflow INFO:
	 [Node] Finished "_MNItpms2t12", elapsed time 1.984478s.
251031-06:53:04,290 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t10" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t10".
251031-06:53:04,291 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t10" - collecting precomputed outputs
251031-06:53:04,291 nipype.workflow INFO:
	 [Node] "_MNItpms2t10" found cached.
251031-06:53:04,292 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t11" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t11".
251031-06:53:04,293 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t11" - collecting precomputed outputs
251031-06:53:04,293 nipype.workflow INFO:
	 [Node] "_MNItpms2t11" found cached.
251031-06:53:04,294 nipype.workflow INFO:
	 [Node] Setting-up "_MNItpms2t12" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MNItpms2t1/mapflow/_MNItpms2t12".
251031-06:53:04,295 nipype.workflow INFO:
	 [Node] Cached "_MNItpms2t12" - collecting precomputed outputs
251031-06:53:04,295 nipype.workflow INFO:
	 [Node] "_MNItpms2t12" found cached.
251031-06:53:06,544 nipype.workflow INFO:
	 [Node] Finished "invert_xfm", elapsed time 18.25238s.
251031-06:53:08,282 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/segmentation".
251031-06:53:08,293 nipype.workflow INFO:
	 [Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
251031-06:56:29,135 nipype.workflow INFO:
	 [Node] Finished "segmentation", elapsed time 257.913097s.
251031-06:56:30,562 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.segmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/segmentation".
251031-06:56:30,576 nipype.workflow INFO:
	 [Node] Executing "segmentation" <nipype.interfaces.fsl.preprocess.FAST>
251031-06:57:36,512 nipype.workflow INFO:
	 [Node] Finished "segmentation", elapsed time 268.21682s.
251031-06:57:38,751 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/harmonize".
251031-06:57:38,757 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.AirMaskWorkflow.ArtifactMask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/AirMaskWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ArtifactMask".
251031-06:57:38,757 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/PlotSegmentation".
251031-06:57:38,757 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/harmonize".
251031-06:57:38,757 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/PlotSegmentation".
251031-06:57:38,802 nipype.workflow INFO:
	 [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
251031-06:57:38,802 nipype.workflow INFO:
	 [Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
251031-06:57:38,807 nipype.workflow INFO:
	 [Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
251031-06:57:38,807 nipype.workflow INFO:
	 [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
251031-06:57:38,838 nipype.workflow INFO:
	 [Node] Executing "ArtifactMask" <mriqc.interfaces.anatomical.ArtifactMask>
251031-06:57:41,882 nipype.workflow INFO:
	 [Node] Finished "harmonize", elapsed time 3.069785s.
251031-06:57:42,46 nipype.workflow INFO:
	 [Node] Finished "harmonize", elapsed time 3.237974s.
251031-06:57:42,736 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/measures".
251031-06:57:42,737 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/measures".
251031-06:57:42,746 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
251031-06:57:42,747 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
251031-06:57:47,229 nipype.workflow INFO:
	 [Node] Finished "ArtifactMask", elapsed time 8.388821s.
251031-06:57:47,775 nipype.workflow INFO:
	 [Node] Finished "PlotSegmentation", elapsed time 8.966604s.
251031-06:57:48,659 nipype.workflow INFO:
	 [Node] Finished "PlotSegmentation", elapsed time 9.847072s.
251031-06:57:48,661 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.provenance" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/provenance".
251031-06:57:48,665 nipype.workflow INFO:
	 [Node] Executing "provenance" <mriqc.interfaces.reports.AddProvenance>
251031-06:57:48,870 nipype.workflow INFO:
	 [Node] Finished "provenance", elapsed time 0.203755s.
251031-06:57:49,31 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.ComputeQI2" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/ComputeQI2".
251031-06:57:49,32 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotAirmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotAirmask".
251031-06:57:49,34 nipype.workflow INFO:
	 [Node] Executing "ComputeQI2" <mriqc.interfaces.anatomical.ComputeQI2>
251031-06:57:49,36 nipype.workflow INFO:
	 [Node] Executing "PlotAirmask" <mriqc.interfaces.viz.PlotContours>
251031-06:57:50,654 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotArtmask" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotArtmask".
251031-06:57:50,658 nipype.workflow INFO:
	 [Node] Executing "PlotArtmask" <mriqc.interfaces.viz.PlotContours>
251031-06:57:54,110 nipype.workflow INFO:
	 [Node] Finished "PlotAirmask", elapsed time 5.072718s.
251031-06:57:54,790 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/MergePlots".
251031-06:57:54,829 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:57:54,836 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.005806s.
251031-06:57:56,737 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/MergePlots".
251031-06:57:56,784 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-06:57:56,785 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000221s.
251031-06:57:57,20 nipype.workflow INFO:
	 [Node] Finished "PlotArtmask", elapsed time 6.361314s.
251031-06:57:58,798 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 16.050369s.
251031-06:57:58,872 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 16.123646s.
251031-06:58:00,645 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/datasink".
251031-06:58:00,653 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:58:00,655 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.000853s.
251031-06:58:00,796 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/datasink".
251031-06:58:00,804 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-06:58:00,806 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.000815s.
251031-06:58:02,655 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport".
251031-06:58:02,655 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport".
251031-06:58:02,660 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:58:02,660 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-06:58:02,955 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/GenerateReport/sub-01_T1w.html
251031-06:58:02,956 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.29523s.
251031-06:58:03,26 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/GenerateReport/sub-02_T1w.html
251031-06:58:03,26 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.365866s.
251031-06:58:04,663 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-01..anat..sub-01_T1w.nii.gz/dsplots".
251031-06:58:04,667 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:58:04,668 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000481s.
251031-06:58:04,835 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-02..anat..sub-02_T1w.nii.gz/dsplots".
251031-06:58:04,841 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-06:58:04,843 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000454s.
251031-06:58:05,90 nipype.workflow INFO:
	 [Node] Finished "ComputeQI2", elapsed time 16.054619s.
251031-07:01:42,22 nipype.workflow INFO:
	 [Node] Finished "segmentation", elapsed time 311.444759s.
251031-07:01:42,927 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.harmonize" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/harmonize".
251031-07:01:42,927 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.PlotSegmentation" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/PlotSegmentation".
251031-07:01:42,956 nipype.workflow INFO:
	 [Node] Executing "harmonize" <mriqc.interfaces.anatomical.Harmonize>
251031-07:01:42,956 nipype.workflow INFO:
	 [Node] Executing "PlotSegmentation" <mriqc.interfaces.viz.PlotContours>
251031-07:01:45,168 nipype.workflow INFO:
	 [Node] Finished "harmonize", elapsed time 2.210612s.
251031-07:01:46,934 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.measures" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/measures".
251031-07:01:46,975 nipype.workflow INFO:
	 [Node] Executing "measures" <mriqc.interfaces.anatomical.StructuralQC>
251031-07:01:54,231 nipype.workflow INFO:
	 [Node] Finished "PlotSegmentation", elapsed time 11.274252s.
251031-07:01:54,946 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.MergePlots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/MergePlots".
251031-07:01:54,975 nipype.workflow INFO:
	 [Node] Executing "MergePlots" <nipype.interfaces.utility.base.Merge>
251031-07:01:54,977 nipype.workflow INFO:
	 [Node] Finished "MergePlots", elapsed time 0.000389s.
251031-07:01:59,885 nipype.workflow INFO:
	 [Node] Finished "measures", elapsed time 12.907972000000001s.
251031-07:02:01,115 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ComputeIQMs.datasink" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ComputeIQMs/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/datasink".
251031-07:02:01,132 nipype.workflow INFO:
	 [Node] Executing "datasink" <mriqc.interfaces.bids.IQMFileSink>
251031-07:02:01,141 nipype.workflow INFO:
	 [Node] Finished "datasink", elapsed time 0.007332s.
251031-07:02:03,229 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.GenerateReport" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport".
251031-07:02:03,243 nipype.workflow INFO:
	 [Node] Executing "GenerateReport" <mriqc.interfaces.reports.IndividualReport>
251031-07:02:03,751 cli INFO:
	 Generated individual log: /home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/GenerateReport/sub-03_T1w.html
251031-07:02:03,752 nipype.workflow INFO:
	 [Node] Finished "GenerateReport", elapsed time 0.507502s.
251031-07:02:04,935 nipype.workflow INFO:
	 [Node] Setting-up "mriqc_wf.anatMRIQC.ReportsWorkflow.dsplots" in "/home/jovyan/Git_repositories/example-notebooks/books/workflows/MRIQC_workdir/mriqc_wf/anatMRIQC/ReportsWorkflow/_in_file_..home..jovyan..Git_repositories..example-notebooks..books..workflows..ds000102..sub-03..anat..sub-03_T1w.nii.gz/dsplots".
251031-07:02:04,938 nipype.workflow INFO:
	 [Node] Executing "dsplots" <nipype.interfaces.io.DataSink>
251031-07:02:04,939 nipype.workflow INFO:
	 [Node] Finished "dsplots", elapsed time 0.000436s.
251031-07:02:06,946 cli IMPORTANT:
	 Participant level finished successfully.
251031-07:02:06,947 cli INFO:
	 Generating BIDS derivatives metadata.
251031-07:02:06,947 cli INFO:
	 MRIQC completed.

You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.

Group-level Analysis

%%bash

# Exit immediately if a command fails
set -e

mriqc ds000102 \
        MRIQC \
        group \
        --no-sub \
        --work-dir MRIQC_workdir \
        --nprocs 6 \
        --mem-gb 10 \
        --verbose-reports \
        -v                           

You are using MRIQC v22.0.6, and a newer version is available: 24.0.2.

MRIQC Visual Reports

MRIQC automatically generates individual and group-level reports to support the quality assessment of MRI data.

Individual reports include mosaic views of anatomical or functional images along various cutting planes, along with overlays like segmentation contours or motion estimates. These visuals help quickly screen for artifacts or other issues. They are especially useful for reviewing images that may have been flagged as low-quality by the automated classifier.

Group reports compile quality metrics across all subjects and display interactive scatter plots for each image quality metric (IQM). These plots make it easy to spot outliers—clicking on any point in the scatter plot refers to the corresponding individual report for that subject.

These embedded reports offer an intuitive way to explore quality metrics and support decisions about excluding or further examining specific runs or subjects.

Anatomical Report

%%capture 
! pip install beautifulsoup4

from bs4 import BeautifulSoup, element, Doctype
from IPython.display import HTML, display

with open('./MRIQC/sub-01_T1w.html') as f:
    soup = BeautifulSoup(f, 'html.parser')

# Remove scripts and interactive elements
for tag in soup(['script', 'style', 'button', 'nav', 'head']):
    tag.decompose()

with open("./soup.txt", "w") as f:
  f.write(str(soup))
# print(str(soup))
display(HTML(str(soup)))

MRIQC: individual T1w report

Summary

• BIDS filename: sub-01_T1w.
• Date and time: 2025-10-31, 06:58.
• MRIQC version: 22.0.6.
• Workflow details:
  • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Approximate spatial normalization

Brain mask

Brain tissue segmentation

Artifacts in background

Head outline

"Hat" mask

Distribution of the noise in the background

Other

cjv			0.2745050755713183
cnr			4.756358618314332
efc			0.44045521598736287
fber			14109.098405009148
fwhm	avg		4.30957
fwhm	x		4.28939
fwhm	y		4.3438
fwhm	z		4.29552
icvs	csf		0.24750242184652727
icvs	gm		0.42770345859096437
icvs	wm		0.32479411956250837
inu	med		0.5924772620201111
inu	range		0.19162646830081942
qi	1		0.0
qi	2		0.006239688585665262
rpve	csf		20.414760341290712
rpve	gm		11.82892659250927
rpve	wm		18.42386728034711
size	x		176
size	y		256
size	z		256
snr	csf		1.532474021060442
snr	gm		8.250338102138636
snr	total		10.745867069565472
snr	wm		22.454789085497342
snrd	csf		18.334304297742342
snrd	gm		72.55051257635463
snrd	total		71.0145654716306
snrd	wm		122.15887954079483
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.16901771184651
summary	bg	mad	5.362873994821217
summary	bg	mean	8.162822147397671
summary	bg	median	3.617203541100025
summary	bg	n	4481758.0
summary	bg	p05	0.0
summary	bg	p95	31.488488629460335
summary	bg	stdv	11.167219905963572
summary	csf	k	2.255000492912785
summary	csf	mad	88.93691035342238
summary	csf	mean	168.26875792192473
summary	csf	median	150.08258391916752
summary	csf	n	38027.0
summary	csf	p05	35.17469085082412
summary	csf	p95	353.2606977358459
summary	csf	stdv	97.93354306497828
summary	gm	k	0.13321188046050159
summary	gm	mad	72.07330657779958
summary	gm	mean	592.667880318888
summary	gm	median	593.8904588520527
summary	gm	n	37769.0
summary	gm	p05	472.0178808152676
summary	gm	p95	705.9234069094061
summary	gm	stdv	71.9828192864457
summary	wm	k	0.9922105709335298
summary	wm	mad	39.40007426253044
summary	wm	mean	995.5501219732449
summary	wm	median	999.9790552407503
summary	wm	n	189548.0
summary	wm	p05	914.734322078526
summary	wm	p95	1061.6387849673629
summary	wm	stdv	44.53287953989742
tpm	overlap	csf	0.14616897607992682
tpm	overlap	gm	0.47132375709915053
tpm	overlap	wm	0.5005433784429612
wm2max			0.797009240572711

EchoTime	0.00393
FlipAngle	8.0
InversionTime	0.9
MRAcquisitionType	3D
MagneticFieldStrength	3.0
Manufacturer	Siemens
ManufacturerModelName	Allegra
RepetitionTime	2.5
ScanningSequence	MPRAGE

md5sum	757e697a01eeea5c97a7d6fbc7153373
software	mriqc
version	22.0.6

Rate Image

• Exclude
• Poor
• Acceptable
• Excellent

Head motion artifacts

Eye spillover through PE axis

Non-eye spillover through PE axis

Coil failure

Global noise

Local noise

EM interference / perturbation

Problematic FoV prescription / Wrap-around

Aliasing ghosts

Other ghosts

Intensity non-uniformity

Temporal field variation

Reconstruction and postprocessing (e.g. denoising, defacing, resamplings)

Uncategorized artifact

Comments

Rater confidence:

• Doubtful
• Confident

Download

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.

Functional Report

with open('./MRIQC/sub-02_task-flanker_run-1_bold.html') as f:
    soup = BeautifulSoup(f, 'html.parser')

for tag in soup(['script', 'style', 'button', 'nav', 'head']):
    tag.decompose()

display(HTML(str(soup)))

MRIQC: individual bold report

Summary

• BIDS filename: sub-02_task-flanker_run-1_bold.
• Date and time: 2025-10-31, 06:52.
• MRIQC version: 22.0.6.
• Workflow details:
  • Framewise Displacement was computed using 3dvolreg (AFNI)
  • Framewise Displacement threshold was defined at 0.200000 mm

Visual reports

BOLD average

Standard deviation map

FMRI summary plot

Zoomed-in BOLD average

Background noise

Calculated brain mask

Approximate spatial normalization

Other

aor			0.0005973188405797101
aqi			0.010531642898550724
dummy_trs			8
dvars	nstd		28.635906219999992
dvars	std		1.0943224727737226
dvars	vstd		1.0151964727737228
efc			0.5280399781554582
fber			1520.701171875
fd	mean		0.08715784356571235
fd	num		1
fd	perc		0.7246376811594203
fwhm	avg		1.9117761111111111
fwhm	x		1.84609
fwhm	y		2.1309133333333334
fwhm	z		1.758325
gcor			0.0162065
gsr	x		-0.004263784736394882
gsr	y		0.05531269684433937
size	t		138
size	x		64
size	y		64
size	z		40
snr			7.202455494388621
spacing	tr		2.0
spacing	x		3.0
spacing	y		3.0
spacing	z		4.0
summary	bg	k	31.841027228567505
summary	bg	mad	6.714683243417574
summary	bg	mean	44.597251892089844
summary	bg	median	18.927536010742188
summary	bg	n	100711.0
summary	bg	p05	13.956521987915039
summary	bg	p95	157.96377563476562
summary	bg	stdv	70.83395385742188
summary	fg	k	2.4520919249811914
summary	fg	mad	88.72515519513009
summary	fg	mean	753.64892578125
summary	fg	median	750.3768310546875
summary	fg	n	28540.0
summary	fg	p05	587.889501953125
summary	fg	p95	916.4866210937499
summary	fg	stdv	104.18164825439453
tsnr			54.19621087354608

CogAtlasID	tsk_4a57abb949a4f
EchoTime	0.03
FlipAngle	80.0
MRAcquisitionType	2D
MagneticFieldStrength	3.0
Manufacturer	Siemens
ManufacturerModelName	Allegra
RepetitionTime	2.0
ScanningSequence	Echo Planar
TaskDescription	On each trial (inter-trial interval (ITI) varied between 8 s and 14 s; mean ITI=12 s),participants used one of two buttons on a response pad to indicate the direction of a central arrow in an array of 5 arrows. In congruent trials the flanking arrows pointed in the same direction as the central arrow (e.g., < < < < <), while in more demanding incongruent trials the flanking arrows pointed in the opposite direction (e.g., < < > < <). Subjects performed two 5-minute blocks, each containing 12 congruent and 12 incongruent trials, presented in a pseudorandom order.
TaskName	Flanker

md5sum	80050f0deb13562c24f2fc23f8d095bd
software	mriqc
version	22.0.6

Rate Image

• Exclude
• Poor
• Acceptable
• Excellent

Head motion artifacts

Eye spillover through PE axis

Non-eye spillover through PE axis

Coil failure

Global noise

Local noise

EM interference / perturbation

Problematic FoV prescription / Wrap-around

Aliasing ghosts

Other ghosts

Intensity non-uniformity

Temporal field variation

Reconstruction and postprocessing (e.g. denoising, defacing, resamplings)

Uncategorized artifact

Comments

Rater confidence:

• Doubtful
• Confident

Download

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.

Group functional report

with open('./MRIQC/group_bold.html', 'r') as f:
    html = f.read()

display(HTML(html))

MRIQC: group bold report

Summary

• Date and time: 2025-10-31, 07:02.
• MRIQC version: 22.0.6.

iqm,value,label,units
efc,0.5137879421613524,sub-01_task-flanker_run-1_bold,
efc,0.5141018118746865,sub-01_task-flanker_run-2_bold,
efc,0.5280399781554582,sub-02_task-flanker_run-1_bold,
efc,0.5279315705303982,sub-02_task-flanker_run-2_bold,
efc,0.5224420153665035,sub-03_task-flanker_run-1_bold,
efc,0.5222990459036115,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
fber,2057.02001953125,sub-01_task-flanker_run-1_bold,
fber,2067.097412109375,sub-01_task-flanker_run-2_bold,
fber,1520.701171875,sub-02_task-flanker_run-1_bold,
fber,1496.3599853515625,sub-02_task-flanker_run-2_bold,
fber,1480.1490478515625,sub-03_task-flanker_run-1_bold,
fber,1479.916015625,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
fwhm_x,1.94563,sub-01_task-flanker_run-1_bold,mm
fwhm_x,1.91488,sub-01_task-flanker_run-2_bold,mm
fwhm_x,1.84609,sub-02_task-flanker_run-1_bold,mm
fwhm_x,1.8701266666666667,sub-02_task-flanker_run-2_bold,mm
fwhm_x,2.0211900000000003,sub-03_task-flanker_run-1_bold,mm
fwhm_x,2.01747,sub-03_task-flanker_run-2_bold,mm
fwhm_y,2.233756666666667,sub-01_task-flanker_run-1_bold,mm
fwhm_y,2.192266666666667,sub-01_task-flanker_run-2_bold,mm
fwhm_y,2.130913333333333,sub-02_task-flanker_run-1_bold,mm
fwhm_y,2.1143966666666665,sub-02_task-flanker_run-2_bold,mm
fwhm_y,2.27967,sub-03_task-flanker_run-1_bold,mm
fwhm_y,2.27086,sub-03_task-flanker_run-2_bold,mm
fwhm_z,1.7336,sub-01_task-flanker_run-1_bold,mm
fwhm_z,1.710655,sub-01_task-flanker_run-2_bold,mm
fwhm_z,1.758325,sub-02_task-flanker_run-1_bold,mm
fwhm_z,1.75848,sub-02_task-flanker_run-2_bold,mm
fwhm_z,1.889,sub-03_task-flanker_run-1_bold,mm
fwhm_z,1.87102,sub-03_task-flanker_run-2_bold,mm

iqm,value,label,units
gsr_x,0.001949863275513,sub-01_task-flanker_run-1_bold,
gsr_x,0.0018921846058219,sub-01_task-flanker_run-2_bold,
gsr_x,-0.0042637847363948,sub-02_task-flanker_run-1_bold,
gsr_x,-0.0040637427009642,sub-02_task-flanker_run-2_bold,
gsr_x,0.0199778899550437,sub-03_task-flanker_run-1_bold,
gsr_x,0.0203121751546859,sub-03_task-flanker_run-2_bold,
gsr_y,0.0434910021722316,sub-01_task-flanker_run-1_bold,
gsr_y,0.0430546626448631,sub-01_task-flanker_run-2_bold,
gsr_y,0.0553126968443393,sub-02_task-flanker_run-1_bold,
gsr_y,0.056138627231121,sub-02_task-flanker_run-2_bold,
gsr_y,0.0355224460363388,sub-03_task-flanker_run-1_bold,
gsr_y,0.035508707165718,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
snr,6.597998188703332,sub-01_task-flanker_run-1_bold,
snr,6.619733755650776,sub-01_task-flanker_run-2_bold,
snr,7.202455494388621,sub-02_task-flanker_run-1_bold,
snr,7.181428553647737,sub-02_task-flanker_run-2_bold,
snr,6.508018926171187,sub-03_task-flanker_run-1_bold,
snr,6.479639146514161,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
dvars_std,1.0190471897916669,sub-01_task-flanker_run-1_bold,
dvars_std,1.0389182213793102,sub-01_task-flanker_run-2_bold,
dvars_std,1.0943224727737226,sub-02_task-flanker_run-1_bold,
dvars_std,1.1045396828275864,sub-02_task-flanker_run-2_bold,
dvars_std,1.012450589166667,sub-03_task-flanker_run-1_bold,
dvars_std,1.0589742485416669,sub-03_task-flanker_run-2_bold,
dvars_vstd,0.9975063518055556,sub-01_task-flanker_run-1_bold,
dvars_vstd,1.016255194,sub-01_task-flanker_run-2_bold,
dvars_vstd,1.0151964727737228,sub-02_task-flanker_run-1_bold,
dvars_vstd,1.019492398827586,sub-02_task-flanker_run-2_bold,
dvars_vstd,0.975407568958334,sub-03_task-flanker_run-1_bold,
dvars_vstd,1.0098302682638889,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
dvars_nstd,25.72162355305556,sub-01_task-flanker_run-1_bold,
dvars_nstd,25.19403640462068,sub-01_task-flanker_run-2_bold,
dvars_nstd,28.635906219999992,sub-02_task-flanker_run-1_bold,
dvars_nstd,28.65068350172413,sub-02_task-flanker_run-2_bold,
dvars_nstd,28.247009939305563,sub-03_task-flanker_run-1_bold,
dvars_nstd,27.78282837020833,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
fd_mean,0.1031688863256034,sub-01_task-flanker_run-1_bold,mm
fd_mean,0.084591438858142,sub-01_task-flanker_run-2_bold,mm
fd_mean,0.0871578435657123,sub-02_task-flanker_run-1_bold,mm
fd_mean,0.0982997229098483,sub-02_task-flanker_run-2_bold,mm
fd_mean,0.1390658420675056,sub-03_task-flanker_run-1_bold,mm
fd_mean,0.1475953170388844,sub-03_task-flanker_run-2_bold,mm

iqm,value,label,units
fd_num,11,sub-01_task-flanker_run-1_bold,# timepoints
fd_num,3,sub-01_task-flanker_run-2_bold,# timepoints
fd_num,1,sub-02_task-flanker_run-1_bold,# timepoints
fd_num,5,sub-02_task-flanker_run-2_bold,# timepoints
fd_num,18,sub-03_task-flanker_run-1_bold,# timepoints
fd_num,25,sub-03_task-flanker_run-2_bold,# timepoints

iqm,value,label,units
fd_perc,7.586206896551724,sub-01_task-flanker_run-1_bold,% timepoints
fd_perc,2.054794520547945,sub-01_task-flanker_run-2_bold,% timepoints
fd_perc,0.7246376811594203,sub-02_task-flanker_run-1_bold,% timepoints
fd_perc,3.4246575342465757,sub-02_task-flanker_run-2_bold,% timepoints
fd_perc,12.413793103448276,sub-03_task-flanker_run-1_bold,% timepoints
fd_perc,17.24137931034483,sub-03_task-flanker_run-2_bold,% timepoints

iqm,value,label,units
dummy_trs,1,sub-01_task-flanker_run-1_bold,# TRs
dummy_trs,0,sub-01_task-flanker_run-2_bold,# TRs
dummy_trs,8,sub-02_task-flanker_run-1_bold,# TRs
dummy_trs,0,sub-02_task-flanker_run-2_bold,# TRs
dummy_trs,1,sub-03_task-flanker_run-1_bold,# TRs
dummy_trs,1,sub-03_task-flanker_run-2_bold,# TRs

iqm,value,label,units
gcor,0.0103515,sub-01_task-flanker_run-1_bold,
gcor,0.0328894,sub-01_task-flanker_run-2_bold,
gcor,0.0162065,sub-02_task-flanker_run-1_bold,
gcor,0.0193741,sub-02_task-flanker_run-2_bold,
gcor,0.0250113,sub-03_task-flanker_run-1_bold,
gcor,0.0552101,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
tsnr,53.26685958262533,sub-01_task-flanker_run-1_bold,
tsnr,55.92864219099283,sub-01_task-flanker_run-2_bold,
tsnr,54.19621087354608,sub-02_task-flanker_run-1_bold,
tsnr,53.29360071220435,sub-02_task-flanker_run-2_bold,
tsnr,44.66549053788185,sub-03_task-flanker_run-1_bold,
tsnr,47.14972381858388,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
aor,0.0009353103448275,sub-01_task-flanker_run-1_bold,
aor,0.0007,sub-01_task-flanker_run-2_bold,
aor,0.0005973188405797,sub-02_task-flanker_run-1_bold,
aor,0.0008686986301369,sub-02_task-flanker_run-2_bold,
aor,0.0008477931034482,sub-03_task-flanker_run-1_bold,
aor,0.0010423448275862,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
aqi,0.008739852,sub-01_task-flanker_run-1_bold,
aqi,0.0074861442465753,sub-01_task-flanker_run-2_bold,
aqi,0.0105316428985507,sub-02_task-flanker_run-1_bold,
aqi,0.0111762369863013,sub-02_task-flanker_run-2_bold,
aqi,0.0136861315862068,sub-03_task-flanker_run-1_bold,
aqi,0.0107825657931034,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
summary_bg_mean,31.51854705810547,sub-01_task-flanker_run-1_bold,
summary_bg_mean,32.28404235839844,sub-01_task-flanker_run-2_bold,
summary_bg_mean,44.59725189208984,sub-02_task-flanker_run-1_bold,
summary_bg_mean,44.723880767822266,sub-02_task-flanker_run-2_bold,
summary_bg_mean,40.49751663208008,sub-03_task-flanker_run-1_bold,
summary_bg_mean,40.71213150024414,sub-03_task-flanker_run-2_bold,
summary_bg_stdv,47.1338996887207,sub-01_task-flanker_run-1_bold,
summary_bg_stdv,48.91727066040039,sub-01_task-flanker_run-2_bold,
summary_bg_stdv,70.83395385742188,sub-02_task-flanker_run-1_bold,
summary_bg_stdv,70.6360855102539,sub-02_task-flanker_run-2_bold,
summary_bg_stdv,61.49507141113281,sub-03_task-flanker_run-1_bold,
summary_bg_stdv,61.75931167602539,sub-03_task-flanker_run-2_bold,
summary_bg_k,40.796684130227845,sub-01_task-flanker_run-1_bold,
summary_bg_k,40.56636313248004,sub-01_task-flanker_run-2_bold,
summary_bg_k,31.841027228567505,sub-02_task-flanker_run-1_bold,
summary_bg_k,31.480310067846126,sub-02_task-flanker_run-2_bold,
summary_bg_k,32.3057733230963,sub-03_task-flanker_run-1_bold,
summary_bg_k,30.99928345122325,sub-03_task-flanker_run-2_bold,
summary_bg_p05,12.38620662689209,sub-01_task-flanker_run-1_bold,
summary_bg_p05,12.32876682281494,sub-01_task-flanker_run-2_bold,
summary_bg_p05,13.95652198791504,sub-02_task-flanker_run-1_bold,
summary_bg_p05,13.308218955993652,sub-02_task-flanker_run-2_bold,
summary_bg_p05,12.986207008361816,sub-03_task-flanker_run-1_bold,
summary_bg_p05,12.82068920135498,sub-03_task-flanker_run-2_bold,
summary_bg_p95,103.10482635498016,sub-01_task-flanker_run-1_bold,
summary_bg_p95,107.98629760742188,sub-01_task-flanker_run-2_bold,
summary_bg_p95,157.96377563476562,sub-02_task-flanker_run-1_bold,
summary_bg_p95,156.5760246276854,sub-02_task-flanker_run-2_bold,
summary_bg_p95,137.71241149902326,sub-03_task-flanker_run-1_bold,
summary_bg_p95,139.94206542968743,sub-03_task-flanker_run-2_bold,

iqm,value,label,units
summary_fg_mean,716.656494140625,sub-01_task-flanker_run-1_bold,
summary_fg_mean,725.9530639648438,sub-01_task-flanker_run-2_bold,
summary_fg_mean,753.64892578125,sub-02_task-flanker_run-1_bold,
summary_fg_mean,754.201171875,sub-02_task-flanker_run-2_bold,
summary_fg_mean,726.44873046875,sub-03_task-flanker_run-1_bold,
summary_fg_mean,729.5176391601562,sub-03_task-flanker_run-2_bold,
summary_fg_stdv,107.73931121826172,sub-01_task-flanker_run-1_bold,
summary_fg_stdv,108.7079849243164,sub-01_task-flanker_run-2_bold,
summary_fg_stdv,104.18164825439452,sub-02_task-flanker_run-1_bold,
summary_fg_stdv,104.58299255371094,sub-02_task-flanker_run-2_bold,
summary_fg_stdv,111.8971176147461,sub-03_task-flanker_run-1_bold,
summary_fg_stdv,112.95342254638672,sub-03_task-flanker_run-2_bold,
summary_fg_k,1.4894273430681393,sub-01_task-flanker_run-1_bold,
summary_fg_k,1.5604316632668205,sub-01_task-flanker_run-2_bold,
summary_fg_k,2.4520919249811914,sub-02_task-flanker_run-1_bold,
summary_fg_k,2.4435598093382547,sub-02_task-flanker_run-2_bold,
summary_fg_k,1.833473983348231,sub-03_task-flanker_run-1_bold,
summary_fg_k,1.818683743536996,sub-03_task-flanker_run-2_bold,
summary_fg_p05,551.1127655029297,sub-01_task-flanker_run-1_bold,
summary_fg_p05,562.0571685791016,sub-01_task-flanker_run-2_bold,
summary_fg_p05,587.889501953125,sub-02_task-flanker_run-1_bold,
summary_fg_p05,588.4177856445312,sub-02_task-flanker_run-2_bold,
summary_fg_p05,533.5941131591796,sub-03_task-flanker_run-1_bold,
summary_fg_p05,533.0144836425782,sub-03_task-flanker_run-2_bold,
summary_fg_p95,888.8937866210937,sub-01_task-flanker_run-1_bold,
summary_fg_p95,899.1041229248046,sub-01_task-flanker_run-2_bold,
summary_fg_p95,916.48662109375,sub-02_task-flanker_run-1_bold,
summary_fg_p95,918.7106018066406,sub-02_task-flanker_run-2_bold,
summary_fg_p95,893.073452758789,sub-03_task-flanker_run-1_bold,
summary_fg_p95,897.8468872070313,sub-03_task-flanker_run-2_bold,

Dependencies in Jupyter/Python

• Using the package watermark to document system environment and software versions used in this notebook

%load_ext watermark

%watermark
%watermark --iversions

Last updated: 2025-10-31T07:02:29.124406+00:00

Python implementation: CPython
Python version       : 3.11.6
IPython version      : 8.16.1

Compiler    : GCC 12.3.0
OS          : Linux
Release     : 5.4.0-204-generic
Machine     : x86_64
Processor   : x86_64
CPU cores   : 32
Architecture: 64bit

bs4    : 4.12.2
IPython: 8.16.1