BIDS conversion

Author: Thuy Dao

Date: 23 Nov 2024

Citation and Resources:

Tools included in this notebook

dcm2niix:

• Li, X., Morgan, P. S., Ashburner, J., Smith, J., & Rorden, C. (2016). The first step for neuroimaging data analysis: DICOM to NIfTI conversion. Journal of Neuroscience Methods, 264, 47–56. https://doi.org/10.1016/j.jneumeth.2016.03.001

BIDScoin:

• Zwiers MP, Moia S and Oostenveld R (2022) BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure. Front. Neuroinform. 15:770608. doi: 10.3389/fninf.2021.770608

HeuDiConv:

• Yaroslav O. Halchenko, Mathias Goncalves, Satrajit Ghosh, Pablo Velasco, Matteo Visconti di Oleggio Castello, Taylor Salo, John T. Wodder II, Michael Hanke, Patrick Sadil, Krzysztof Jacek Gorgolewski, Horea-Ioan Ioanas, Chris Rorden, Timothy J. Hendrickson, Michael Dayan, Sean Dae Houlihan, James Kent, Ted Strauss, John Lee, Isaac To, … David N. Kennedy. (2024). HeuDiConv — flexible DICOM conversion into structured directory layouts (v1.3.1). Zenodo. https://doi.org/10.5281/zenodo.13994097

Dataset

This example uses a phantom dataset generated by the University of Arizona on their Siemens Skyra 3T with Syngo MR VE11c software on 2018_02_08.

BIDS conversion

1. In this interactive example notebook, we first download DICOM data using datalad.

2. Next we will convert DICOMS into the BIDS data structure using:

   • 2.1. dcm2niix which converts data to NIfTi and then manually organizes the folder.

   • 2.2. heudiconv to automate the conversion and organization with a provided heuristic file.

   • 2.3. bidscoin to automate the conversion and organization with the bidseditor interface (optionally using --automated to disable user interaction).

1. Data preparation

Download DICOM data from Datalad.

%%bash
datalad install https://datasets.datalad.org/repronim/heudiconv-reproin-example
cd heudiconv-reproin-example/REPROIN/dicom && datalad get 001

install(ok): /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example (dataset)
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0001-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0001-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0001-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0001-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0001-0005.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0002-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0002-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0002-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0002-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0002-0005.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0003-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0003-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0003-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0003-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0003-0005.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0004-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0004-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0004-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0005-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0005-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0005-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0006-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0006-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0007-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0007-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0008-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0008-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0009-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0009-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0010-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0010-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0011-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0011-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0012-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0012-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0013-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0013-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0014-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0014-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0015-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0015-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0016-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0016-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0017-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0017-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0018-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0018-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0019-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0019-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0020-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0020-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0021-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0021-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0022-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0022-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0023-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0023-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0024-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0024-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0025-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0025-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0026-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0026-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0027-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0027-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0028-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0028-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0029-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0029-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0030-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0030-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0031-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0031-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0032-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0032-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0033-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0033-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0034-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0034-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0035-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0035-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0036-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0036-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0037-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0037-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0038-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0038-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0039-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0039-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0040-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0040-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0041-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0041-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0042-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0042-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0043-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0043-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0044-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0044-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0045-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0045-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0046-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0046-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0047-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0047-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0048-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0048-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0049-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0049-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0050-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0050-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0051-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0051-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0052-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0052-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0053-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0053-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0054-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0054-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0055-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0055-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0056-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0056-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0057-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0057-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0058-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0058-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0059-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0059-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0060-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0060-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0061-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0061-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0062-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0062-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0063-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0063-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0064-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0064-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0065-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0065-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0066-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0066-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0067-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0067-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0068-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0068-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0069-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0069-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0070-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0070-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0071-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0071-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0072-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0072-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0073-0001.dcm (file) [from origin...]
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get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0052.dcm (file) [from origin...]
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get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0054.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0055.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0056.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0057.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0058.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0059.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0060.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0061.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0062.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0063.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0064.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0065.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0066.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0067.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0068.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0069.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0070.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0071.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0072.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0073.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0074.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0075.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0076.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0077.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0078.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0079.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0080.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0081.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0082.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0083.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0084.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0085.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0086.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0087.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0088.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0089.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0090.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0091.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0092.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0093.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0094.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0095.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0096.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0097.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0098.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0099.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0100.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0101.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0102.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0103.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0104.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0105.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0106.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0107.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0108.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0109.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0110.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0111.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0112.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0113.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0114.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0115.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0116.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0117.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0118.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0119.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0120.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0121.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0122.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0123.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0124.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0125.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0126.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0127.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0128.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0129.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0130.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0131.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0132.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0133.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0134.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0135.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0136.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0137.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0138.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0139.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0140.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0141.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0142.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0143.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0144.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0145.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0146.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0147.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0148.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0149.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0150.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0151.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0152.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0153.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0154.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0155.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0156.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0157.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0158.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0159.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0160.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0161.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0162.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0163.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0164.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0165.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0166.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0167.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0168.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0169.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0170.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0171.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0172.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0173.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0174.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0175.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0176.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0177.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0178.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0179.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0180.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0181.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0182.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0183.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0184.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0185.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0186.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0187.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0188.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0189.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0190.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0191.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0192.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0193.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0194.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0195.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0196.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0197.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0198.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0199.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0200.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0201.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0202.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0203.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0204.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0205.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0206.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0207.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0208.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0209.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0210.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0211.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0212.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0213.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0214.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0215.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0216.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0217.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0218.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0219.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0220.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0221.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0222.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0223.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0224.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0225.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0226.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0227.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0228.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0229.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0230.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0231.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0232.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0233.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0234.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0235.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0236.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0237.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0238.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0239.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0240.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0005.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0006.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0007.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0008.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0009.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0010.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0011.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0012.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0013.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0014.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0015.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0016.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0001-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0001-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0002-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0002-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0003-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0003-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0004-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0004-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0005-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0005-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0006-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0006-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0007-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0007-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0008-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0008-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0009-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0009-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0010-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0010-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0011-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0011-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0012-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0012-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0013-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0013-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0014-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0014-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0015-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0015-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0016-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0016-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0017-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0017-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0018-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0018-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0019-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0019-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0020-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0020-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0021-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0021-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0022-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0022-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0023-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0023-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0024-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0024-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0025-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0025-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0026-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0026-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0027-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0027-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0028-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0028-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0029-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0029-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0030-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0030-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0031-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0031-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0032-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0032-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0033-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0033-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0034-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0034-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0035-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0035-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0036-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0036-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0037-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0037-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0038-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0038-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0039-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0039-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0040-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0040-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0041-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0041-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0042-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0042-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0043-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0043-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0044-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0044-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0005.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0006.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0007.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0008.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0009.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0010.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0011.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0012.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0013.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0014.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0015.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0016.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0017.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0018.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0019.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0020.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0021.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0022.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0023.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0024.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0025.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0026.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0027.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0028.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0029.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0030.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0031.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0032.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0033.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0034.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0035.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0036.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0037.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0038.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0039.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0040.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0041.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0042.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0043.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0044.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0005.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0006.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0007.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0008.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0009.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0010.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0011.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0012.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0013.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0014.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0015.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0016.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0017.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0018.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0019.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0020.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0021.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0022.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0023.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0024.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0025.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0026.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0027.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0028.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0029.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0030.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0031.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0032.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0033.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0034.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0035.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0036.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0037.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0038.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0039.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0040.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0041.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0042.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0043.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0044.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0045.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0046.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0047.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0048.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0049.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0050.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0051.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0052.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0053.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0054.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0055.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0056.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0057.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0058.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0059.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0060.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0061.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0062.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0063.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0064.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0065.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0066.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0067.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0068.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0069.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0070.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0071.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0072.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0073.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0074.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0075.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0076.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0077.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0078.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0079.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0080.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0081.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0082.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0083.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0084.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0085.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0086.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0087.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0088.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0089.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0090.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0091.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0092.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0093.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0094.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0095.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0096.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0097.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0098.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0099.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0100.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0101.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0102.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0103.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0104.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0105.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0106.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0107.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0108.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0109.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0110.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0111.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0112.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0113.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0114.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0115.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0116.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0117.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0118.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0119.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0120.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0121.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0122.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0123.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0124.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0125.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0126.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0127.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0128.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0129.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0130.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0131.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0132.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16/IM-0011-0001.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16/IM-0011-0002.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16/IM-0011-0003.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16/IM-0011-0004.dcm (file) [from origin...]
get(ok): REPROIN/dicom/001 (directory)
action summary:
  get (ok: 792)

[INFO] Attempting a clone into /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example 
[INFO] Attempting to clone from https://datasets.datalad.org/repronim/heudiconv-reproin-example to /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example 
[INFO] Attempting to clone from https://datasets.datalad.org/repronim/heudiconv-reproin-example/.git to /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example 
[INFO] Start enumerating objects 
[INFO] Start counting objects 
[INFO] Start compressing objects 
[INFO] Start receiving objects 
[INFO] Start resolving deltas 
[INFO] Completed clone attempts for Dataset(/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example) 
[INFO] scanning for unlocked files (this may take some time)

We will be working from a directory called REPROIN. Under the REPROIN directory is the dicom subdirectory: Under the subject number 001 the session Patterson_Coben - 1 is nested. Each dicom sequence folder is nested under the session:

!tree heudiconv-reproin-example/REPROIN/ -I "*.dcm"

heudiconv-reproin-example/REPROIN/
└── dicom
    └── 001
        └── Patterson_Coben - 1
            ├── Localizers_4
            ├── anatT1w_acqMPRAGE_6
            ├── dwi_dirAP_9
            ├── fmap_acq4mm_7
            ├── fmap_acq4mm_8
            ├── fmap_dirPA_15
            └── func_taskrest_16

10 directories, 0 files

2. Convert DICOMS to BIDS-formatted NIfTI

2.1. Using dcm2niix (manual workflow)

dcm2niix converts neuroimaging data from the DICOM format to the NIfTI format and generates a BIDS JSON format sidecar which includes relevant information. However, users need to manually organize these files into a bids-compliant subject directory.

2.1.1. Convert DICOM to NIfTI

import module
await module.load('dcm2niix/v1.0.20240202')

!dcm2niix -h

Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC8.4.0 x86-64 (64-bit Linux)
usage: dcm2niix [options] <in_folder>
 Options :
  -1..-9 : gz compression level (1=fastest..9=smallest, default 6)
  -a : adjacent DICOMs (images from same series always in same folder) for faster conversion (n/y, default n)
  -b : BIDS sidecar (y/n/o [o=only: no NIfTI], default y)
   -ba : anonymize BIDS (y/n, default y)
  -c : comment stored in NIfTI aux_file (up to 24 characters e.g. '-c VIP', empty to anonymize e.g. 0020,4000 e.g. '-c ""')
  -d : directory search depth. Convert DICOMs in sub-folders of in_folder? (0..9, default 5)
  -e : export as NRRD (y) or MGH (o) or JSON/JNIfTI (j) or BJNIfTI (b) instead of NIfTI (y/n/o/j/b, default n)
  -f : filename (%a=antenna (coil) name, %b=basename, %c=comments, %d=description, %e=echo number, %f=folder name, %g=accession number, %i=ID of patient, %j=seriesInstanceUID, %k=studyInstanceUID, %m=manufacturer, %n=name of patient, %o=mediaObjectInstanceUID, %p=protocol, %r=instance number, %s=series number, %t=time, %u=acquisition number, %v=vendor, %x=study ID; %z=sequence name; default '%f_%p_%t_%s')
  -g : generate defaults file (y/n/o/i [o=only: reset and write defaults; i=ignore: reset defaults], default n)
  -h : show help
  -i : ignore derived, localizer and 2D images (y/n, default n)
  -l : losslessly scale 16-bit integers to use dynamic range (y/n/o [yes=scale, no=no, but uint16->int16, o=original], default o)
  -m : merge 2D slices from same series regardless of echo, exposure, etc. (n/y or 0/1/2, default 2) [no, yes, auto]
  -n : only convert this series CRC number - can be used up to 16 times (default convert all)
  -o : output directory (omit to save to input folder)
  -p : Philips precise float (not display) scaling (y/n, default y)
  -q : only search directory for DICOMs (y/l/n, default y) [y=show number of DICOMs found, l=additionally list DICOMs found, n=no]
  -r : rename instead of convert DICOMs (y/n, default n)
  -s : single file mode, do not convert other images in folder (y/n, default n)
  -u : up-to-date check
  -v : verbose (n/y or 0/1/2, default 0) [no, yes, logorrheic]
  -w : write behavior for name conflicts (0,1,2, default 2: 0=skip duplicates, 1=overwrite, 2=add suffix)
  -x : crop 3D acquisitions (y/n/i, default n, use 'i'gnore to neither crop nor rotate 3D acquistions)
  -z : gz compress images (y/o/i/n/3, default n) [y=pigz, o=optimal pigz, i=internal:zlib, n=no, 3=no,3D]
  --big-endian : byte order (y/n/o, default o) [y=big-end, n=little-end, o=optimal/native]
  --progress : Slicer format progress information (y/n, default n)
  --ignore_trigger_times : disregard values in 0018,1060 and 0020,9153
  --terse : omit filename post-fixes (can cause overwrites)
  --version : report version
  --xml : Slicer format features
 Defaults file : /home/jovyan/.dcm2nii.ini
 Examples :
  dcm2niix /Users/chris/dir
  dcm2niix -c "my comment" /Users/chris/dir
  dcm2niix -o /users/cr/outdir/ -z y ~/dicomdir
  dcm2niix -f %p_%s -b y -ba n ~/dicomdir
  dcm2niix -f mystudy%s ~/dicomdir
  dcm2niix -o "~/dir with spaces/dir" ~/dicomdir
Example output filename: 'myFolder_MPRAGE_19770703150928_1.nii'

!mkdir dcm2niix_bids
!dcm2niix n -o ./dcm2niix_bids ./heudiconv-reproin-example/REPROIN/dicom

Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC8.4.0 x86-64 (64-bit Linux)
Found 791 DICOM file(s)
Slices not stacked: orientation varies (vNav or localizer?) [0.0964069 0.780133 0.618141 0.0553476 0.615871 -0.7859] != [-0.522168 0.736033 0.430808 0.0695744 0.540223 -0.838641]
Convert 2 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_3_i00001 (162x162x2x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_3_i00004 (162x162x1x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_3_i00003 (162x162x1x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_3_i00002 (162x162x1x1)
Convert 128 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_1 (160x160x128x1)
Convert 128 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_2 (160x160x128x1)
Convert 4 DICOM as ./dcm2niix_bids/dicom_func_task-rest_20190208142838_16 (64x64x44x4)
Convert 132 DICOM as ./dcm2niix_bids/dicom_fmap_dir-PA_20190208142838_15 (122x122x66x2)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_4_i00001 (162x162x1x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_4_i00003 (162x162x1x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_4_i00002 (162x162x1x1)
Convert 16 DICOM as ./dcm2niix_bids/dicom_dwi_dir-AP_20190208142838_9 (122x122x66x16)
Slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2). Use 'merge 2D slices' option to force stacking
Convert 44 DICOM as ./dcm2niix_bids/dicom_fmap_acq-4mm_20190208142838_7_e1 (64x64x44x1)
Convert 44 DICOM as ./dcm2niix_bids/dicom_fmap_acq-4mm_20190208142838_7_e2 (64x64x44x1)
Convert 240 DICOM as ./dcm2niix_bids/dicom_anat-T1w_acq-MPRAGE_20190208142838_6 (224x224x240x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_5_i00003 (162x162x1x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_5_i00002 (162x162x1x1)
Convert 1 DICOM as ./dcm2niix_bids/dicom_anat-scout_20190208142838_5_i00001 (162x162x1x1)
Convert 44 DICOM as ./dcm2niix_bids/dicom_fmap_acq-4mm_20190208142838_8_e2_ph (64x64x44x1)
Conversion required 0.938891 seconds (0.935693 for core code).

2.1.2. Organize data into BIDS structure

%%bash
mkdir -p ./dcm2niix_bids/anat
mkdir -p ./dcm2niix_bids/fmap
mkdir -p ./dcm2niix_bids/dwi
mkdir -p ./dcm2niix_bids/func

find ./dcm2niix_bids -maxdepth 1 -type f -name *anat* -exec mv {} ./dcm2niix_bids/anat \;
find ./dcm2niix_bids -maxdepth 1 -type f -name *fmap* -exec mv {} ./dcm2niix_bids/fmap \;
find ./dcm2niix_bids -maxdepth 1 -type f -name *dwi* -exec mv {} ./dcm2niix_bids/dwi \;
find ./dcm2niix_bids -maxdepth 1 -type f -name *func* -exec mv {} ./dcm2niix_bids/func \;

!tree ./dcm2niix_bids/

./dcm2niix_bids/
├── anat
│   ├── dicom_anat-T1w_acq-MPRAGE_20190208142838_6.json
│   ├── dicom_anat-T1w_acq-MPRAGE_20190208142838_6.nii
│   ├── dicom_anat-scout_20190208142838_1.json
│   ├── dicom_anat-scout_20190208142838_1.nii
│   ├── dicom_anat-scout_20190208142838_2.json
│   ├── dicom_anat-scout_20190208142838_2.nii
│   ├── dicom_anat-scout_20190208142838_3_i00001.json
│   ├── dicom_anat-scout_20190208142838_3_i00001.nii
│   ├── dicom_anat-scout_20190208142838_3_i00002.json
│   ├── dicom_anat-scout_20190208142838_3_i00002.nii
│   ├── dicom_anat-scout_20190208142838_3_i00003.json
│   ├── dicom_anat-scout_20190208142838_3_i00003.nii
│   ├── dicom_anat-scout_20190208142838_3_i00004.json
│   ├── dicom_anat-scout_20190208142838_3_i00004.nii
│   ├── dicom_anat-scout_20190208142838_4_i00001.json
│   ├── dicom_anat-scout_20190208142838_4_i00001.nii
│   ├── dicom_anat-scout_20190208142838_4_i00002.json
│   ├── dicom_anat-scout_20190208142838_4_i00002.nii
│   ├── dicom_anat-scout_20190208142838_4_i00003.json
│   ├── dicom_anat-scout_20190208142838_4_i00003.nii
│   ├── dicom_anat-scout_20190208142838_5_i00001.json
│   ├── dicom_anat-scout_20190208142838_5_i00001.nii
│   ├── dicom_anat-scout_20190208142838_5_i00002.json
│   ├── dicom_anat-scout_20190208142838_5_i00002.nii
│   ├── dicom_anat-scout_20190208142838_5_i00003.json
│   └── dicom_anat-scout_20190208142838_5_i00003.nii
├── dwi
│   ├── dicom_dwi_dir-AP_20190208142838_9.bval
│   ├── dicom_dwi_dir-AP_20190208142838_9.bvec
│   ├── dicom_dwi_dir-AP_20190208142838_9.json
│   └── dicom_dwi_dir-AP_20190208142838_9.nii
├── fmap
│   ├── dicom_fmap_acq-4mm_20190208142838_7_e1.json
│   ├── dicom_fmap_acq-4mm_20190208142838_7_e1.nii
│   ├── dicom_fmap_acq-4mm_20190208142838_7_e2.json
│   ├── dicom_fmap_acq-4mm_20190208142838_7_e2.nii
│   ├── dicom_fmap_acq-4mm_20190208142838_8_e2_ph.json
│   ├── dicom_fmap_acq-4mm_20190208142838_8_e2_ph.nii
│   ├── dicom_fmap_dir-PA_20190208142838_15.bval
│   ├── dicom_fmap_dir-PA_20190208142838_15.bvec
│   ├── dicom_fmap_dir-PA_20190208142838_15.json
│   └── dicom_fmap_dir-PA_20190208142838_15.nii
└── func
    ├── dicom_func_task-rest_20190208142838_16.json
    └── dicom_func_task-rest_20190208142838_16.nii

4 directories, 42 files

2.2. Using HeuDiConv (automated workflow)

Typical use of heudiconv will require the creation and editing of your heuristics file.

But heudiconv also comes with existing heuristics which can be used as is, like convertall or ReproIn could be immediately reused and represent two ends of the spectrum in heuristics:

• convertall is very simple and does not automate anything – it is for a user to modify filenames in the prepared conversion table, and then rerun with -c dcm2niix

• reproin can be used fully automated, if original sequences were named according to its ReproIn convention.

await module.load('heudiconv/1.3.1')

!heudiconv -f reproin -b -o ./heudiconv_reproin_bids --files ./heudiconv-reproin-example/REPROIN/dicom/001

WARNING: Could not check for version updates: 500 Server Error: Internal Server Error for url: https://rig.mit.edu/et/projects/nipy/heudiconv
INFO: Running heudiconv version 1.3.1 latest Unknown
INFO: Analyzing 791 dicoms
INFO: Filtering out 0 dicoms based on their filename
INFO: Generated sequence info for 1 studies with 11 entries total
INFO: Processing sequence infos to deduce study/session
INFO: Study session for StudySessionInfo(locator='Patterson/Coben', session=None, subject='001')
INFO: Need to process 1 study sessions
INFO: PROCESSING STARTS: {'subject': '001', 'outdir': '/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben', 'session': None}
INFO: Processing 11 pre-sorted seqinfo entries
INFO: Processing 11 seqinfo entries
WARNING: Deduced datatype to be dwi from DICOM, but got fmap out of fmap_dir-PA
WARNING: Detected 4 duplicated run(s) for template {bids_subject_session_dir}/anat/{bids_subject_session_prefix}_scout: ['1-anat-scout', '2-anat-scout', '3-anat-scout', '4-anat-scout']
INFO: Doing conversion using dcm2niix
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_scout (3 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat . Converter: dcm2niix . Output types: ('dicom',)
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_acq-MPRAGE_T1w (240 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat . Converter: dcm2niix . Output types: ('nii.gz', 'dicom')
251031-03:27:48,136 nipype.workflow INFO:
	 [Node] Setting-up "convert" in "/tmp/dcm2niixkqiwiz_8/convert".
INFO: [Node] Setting-up "convert" in "/tmp/dcm2niixkqiwiz_8/convert".
251031-03:27:48,236 nipype.workflow INFO:
	 [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
INFO: [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
251031-03:27:49,791 nipype.interface INFO:
	 stdout 2025-10-31T03:27:49.791227:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
INFO: stdout 2025-10-31T03:27:49.791227:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
251031-03:27:49,791 nipype.interface INFO:
	 stdout 2025-10-31T03:27:49.791227:Found 240 DICOM file(s)
INFO: stdout 2025-10-31T03:27:49.791227:Found 240 DICOM file(s)
251031-03:27:49,791 nipype.interface INFO:
	 stdout 2025-10-31T03:27:49.791227:Convert 240 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_acq-MPRAGE_T1w_heudiconv217 (224x224x240x1)
INFO: stdout 2025-10-31T03:27:49.791227:Convert 240 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_acq-MPRAGE_T1w_heudiconv217 (224x224x240x1)
251031-03:27:50,429 nipype.interface INFO:
	 stdout 2025-10-31T03:27:50.429606:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_acq-MPRAGE_T1w_heudiconv217.nii"
INFO: stdout 2025-10-31T03:27:50.429606:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_acq-MPRAGE_T1w_heudiconv217.nii"
251031-03:27:50,429 nipype.interface INFO:
	 stdout 2025-10-31T03:27:50.429606:Conversion required 0.808199 seconds (0.271068 for core code).
INFO: stdout 2025-10-31T03:27:50.429606:Conversion required 0.808199 seconds (0.271068 for core code).
251031-03:27:50,457 nipype.workflow INFO:
	 [Node] Finished "convert", elapsed time 0.859761s.
INFO: [Node] Finished "convert", elapsed time 0.859761s.
251031-03:28:14,477 nipype.workflow INFO:
	 [Node] Setting-up "embedder" in "/tmp/embedmeta2x97yhey/embedder".
INFO: [Node] Setting-up "embedder" in "/tmp/embedmeta2x97yhey/embedder".
251031-03:28:14,495 nipype.workflow INFO:
	 [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
INFO: [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
251031-03:28:21,699 nipype.workflow INFO:
	 [Node] Finished "embedder", elapsed time 7.197895s.
INFO: [Node] Finished "embedder", elapsed time 7.197895s.
INFO: Post-treating /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_acq-MPRAGE_T1w.json file
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude (88 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap . Converter: dcm2niix . Output types: ('nii.gz', 'dicom')
251031-03:28:21,734 nipype.workflow INFO:
	 [Node] Setting-up "convert" in "/tmp/dcm2niix7hb22ij7/convert".
INFO: [Node] Setting-up "convert" in "/tmp/dcm2niix7hb22ij7/convert".
251031-03:28:21,776 nipype.workflow INFO:
	 [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
INFO: [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
251031-03:28:21,903 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.903528:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
INFO: stdout 2025-10-31T03:28:21.903528:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
251031-03:28:21,904 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.903528:Found 88 DICOM file(s)
INFO: stdout 2025-10-31T03:28:21.903528:Found 88 DICOM file(s)
251031-03:28:21,904 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.903528:Slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1). Use 'merge 2D slices' option to force stacking
INFO: stdout 2025-10-31T03:28:21.903528:Slices not stacked: echo varies (TE 7.38, 4.92; echo 2, 1). Use 'merge 2D slices' option to force stacking
251031-03:28:21,904 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.903528:Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e2 (64x64x44x1)
INFO: stdout 2025-10-31T03:28:21.903528:Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e2 (64x64x44x1)
251031-03:28:21,921 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.921882:Compress: "/usr/bin/pigz" -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e2.nii"
INFO: stdout 2025-10-31T03:28:21.921882:Compress: "/usr/bin/pigz" -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e2.nii"
251031-03:28:21,922 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.921882:Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e1 (64x64x44x1)
INFO: stdout 2025-10-31T03:28:21.921882:Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e1 (64x64x44x1)
251031-03:28:21,936 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.936353:Compress: "/usr/bin/pigz" -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e1.nii"
INFO: stdout 2025-10-31T03:28:21.936353:Compress: "/usr/bin/pigz" -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_magnitude_heudiconv050_e1.nii"
251031-03:28:21,936 nipype.interface INFO:
	 stdout 2025-10-31T03:28:21.936353:Conversion required 0.107062 seconds (0.077590 for core code).
INFO: stdout 2025-10-31T03:28:21.936353:Conversion required 0.107062 seconds (0.077590 for core code).
251031-03:28:21,972 nipype.workflow INFO:
	 [Node] Finished "convert", elapsed time 0.195124s.
INFO: [Node] Finished "convert", elapsed time 0.195124s.
WARNING: For now not embedding BIDS and info generated .nii.gz itself since sequence produced multiple files
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_phasediff (44 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap . Converter: dcm2niix . Output types: ('nii.gz', 'dicom')
251031-03:28:22,768 nipype.workflow INFO:
	 [Node] Setting-up "convert" in "/tmp/dcm2niixsjawh5l8/convert".
INFO: [Node] Setting-up "convert" in "/tmp/dcm2niixsjawh5l8/convert".
251031-03:28:22,787 nipype.workflow INFO:
	 [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
INFO: [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
251031-03:28:22,865 nipype.interface INFO:
	 stdout 2025-10-31T03:28:22.865703:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
INFO: stdout 2025-10-31T03:28:22.865703:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
251031-03:28:22,866 nipype.interface INFO:
	 stdout 2025-10-31T03:28:22.865703:Found 44 DICOM file(s)
INFO: stdout 2025-10-31T03:28:22.865703:Found 44 DICOM file(s)
251031-03:28:22,866 nipype.interface INFO:
	 stdout 2025-10-31T03:28:22.865703:Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_phasediff_heudiconv329_e2_ph (64x64x44x1)
INFO: stdout 2025-10-31T03:28:22.865703:Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_phasediff_heudiconv329_e2_ph (64x64x44x1)
251031-03:28:22,879 nipype.interface INFO:
	 stdout 2025-10-31T03:28:22.879473:Compress: "/usr/bin/pigz" -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_phasediff_heudiconv329_e2_ph.nii"
INFO: stdout 2025-10-31T03:28:22.879473:Compress: "/usr/bin/pigz" -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_phasediff_heudiconv329_e2_ph.nii"
251031-03:28:22,879 nipype.interface INFO:
	 stdout 2025-10-31T03:28:22.879473:Conversion required 0.043219 seconds (0.029515 for core code).
INFO: stdout 2025-10-31T03:28:22.879473:Conversion required 0.043219 seconds (0.029515 for core code).
251031-03:28:22,907 nipype.workflow INFO:
	 [Node] Finished "convert", elapsed time 0.119054s.
INFO: [Node] Finished "convert", elapsed time 0.119054s.
251031-03:28:23,317 nipype.workflow INFO:
	 [Node] Setting-up "embedder" in "/tmp/embedmetamkjlp6he/embedder".
INFO: [Node] Setting-up "embedder" in "/tmp/embedmetamkjlp6he/embedder".
251031-03:28:23,322 nipype.workflow INFO:
	 [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
INFO: [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
251031-03:28:24,489 nipype.workflow INFO:
	 [Node] Finished "embedder", elapsed time 1.1661380000000001s.
INFO: [Node] Finished "embedder", elapsed time 1.1661380000000001s.
INFO: Post-treating /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_acq-4mm_phasediff.json file
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi/sub-001_dir-AP_dwi (16 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi . Converter: dcm2niix . Output types: ('nii.gz', 'dicom')
251031-03:28:24,504 nipype.workflow INFO:
	 [Node] Setting-up "convert" in "/tmp/dcm2niixog7iysk4/convert".
INFO: [Node] Setting-up "convert" in "/tmp/dcm2niixog7iysk4/convert".
251031-03:28:24,512 nipype.workflow INFO:
	 [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
INFO: [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
251031-03:28:24,639 nipype.interface INFO:
	 stdout 2025-10-31T03:28:24.639611:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
INFO: stdout 2025-10-31T03:28:24.639611:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
251031-03:28:24,640 nipype.interface INFO:
	 stdout 2025-10-31T03:28:24.639611:Found 16 DICOM file(s)
INFO: stdout 2025-10-31T03:28:24.639611:Found 16 DICOM file(s)
251031-03:28:24,640 nipype.interface INFO:
	 stdout 2025-10-31T03:28:24.639611:Convert 16 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi/sub-001_dir-AP_dwi_heudiconv162 (122x122x66x16)
INFO: stdout 2025-10-31T03:28:24.639611:Convert 16 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi/sub-001_dir-AP_dwi_heudiconv162 (122x122x66x16)
251031-03:28:24,965 nipype.interface INFO:
	 stdout 2025-10-31T03:28:24.965901:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi/sub-001_dir-AP_dwi_heudiconv162.nii"
INFO: stdout 2025-10-31T03:28:24.965901:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi/sub-001_dir-AP_dwi_heudiconv162.nii"
251031-03:28:24,966 nipype.interface INFO:
	 stdout 2025-10-31T03:28:24.965901:Conversion required 0.419542 seconds (0.126021 for core code).
INFO: stdout 2025-10-31T03:28:24.965901:Conversion required 0.419542 seconds (0.126021 for core code).
251031-03:28:24,996 nipype.workflow INFO:
	 [Node] Finished "convert", elapsed time 0.482904s.
INFO: [Node] Finished "convert", elapsed time 0.482904s.
251031-03:28:44,682 nipype.workflow INFO:
	 [Node] Setting-up "embedder" in "/tmp/embedmeta_oe3cqsx/embedder".
INFO: [Node] Setting-up "embedder" in "/tmp/embedmeta_oe3cqsx/embedder".
251031-03:28:44,686 nipype.workflow INFO:
	 [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
INFO: [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
251031-03:28:45,587 nipype.workflow INFO:
	 [Node] Finished "embedder", elapsed time 0.899744s.
INFO: [Node] Finished "embedder", elapsed time 0.899744s.
INFO: Post-treating /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/dwi/sub-001_dir-AP_dwi.json file
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_dir-PA_epi (132 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap . Converter: dcm2niix . Output types: ('nii.gz', 'dicom')
251031-03:28:45,605 nipype.workflow INFO:
	 [Node] Setting-up "convert" in "/tmp/dcm2niixji2k_71a/convert".
INFO: [Node] Setting-up "convert" in "/tmp/dcm2niixji2k_71a/convert".
251031-03:28:45,658 nipype.workflow INFO:
	 [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
INFO: [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
251031-03:28:45,777 nipype.interface INFO:
	 stdout 2025-10-31T03:28:45.776868:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
INFO: stdout 2025-10-31T03:28:45.776868:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
251031-03:28:45,777 nipype.interface INFO:
	 stdout 2025-10-31T03:28:45.776868:Found 132 DICOM file(s)
INFO: stdout 2025-10-31T03:28:45.776868:Found 132 DICOM file(s)
251031-03:28:45,777 nipype.interface INFO:
	 stdout 2025-10-31T03:28:45.776868:Convert 132 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_dir-PA_epi_heudiconv091 (122x122x66x2)
INFO: stdout 2025-10-31T03:28:45.776868:Convert 132 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_dir-PA_epi_heudiconv091 (122x122x66x2)
251031-03:28:45,869 nipype.interface INFO:
	 stdout 2025-10-31T03:28:45.869625:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_dir-PA_epi_heudiconv091.nii"
INFO: stdout 2025-10-31T03:28:45.869625:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_dir-PA_epi_heudiconv091.nii"
251031-03:28:45,869 nipype.interface INFO:
	 stdout 2025-10-31T03:28:45.869625:Conversion required 0.175238 seconds (0.086625 for core code).
INFO: stdout 2025-10-31T03:28:45.869625:Conversion required 0.175238 seconds (0.086625 for core code).
251031-03:28:45,897 nipype.workflow INFO:
	 [Node] Finished "convert", elapsed time 0.239133s.
INFO: [Node] Finished "convert", elapsed time 0.239133s.
251031-03:28:48,467 nipype.workflow INFO:
	 [Node] Setting-up "embedder" in "/tmp/embedmetapye_4dh3/embedder".
INFO: [Node] Setting-up "embedder" in "/tmp/embedmetapye_4dh3/embedder".
251031-03:28:48,478 nipype.workflow INFO:
	 [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
INFO: [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
251031-03:28:52,299 nipype.workflow INFO:
	 [Node] Finished "embedder", elapsed time 3.820186s.
INFO: [Node] Finished "embedder", elapsed time 3.820186s.
INFO: Post-treating /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/fmap/sub-001_dir-PA_epi.json file
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func/sub-001_task-rest_bold (4 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func . Converter: dcm2niix . Output types: ('nii.gz', 'dicom')
251031-03:28:52,320 nipype.workflow INFO:
	 [Node] Setting-up "convert" in "/tmp/dcm2niix6dfb6a_y/convert".
INFO: [Node] Setting-up "convert" in "/tmp/dcm2niix6dfb6a_y/convert".
251031-03:28:52,323 nipype.workflow INFO:
	 [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
INFO: [Node] Executing "convert" <nipype.interfaces.dcm2nii.Dcm2niix>
251031-03:28:52,377 nipype.interface INFO:
	 stdout 2025-10-31T03:28:52.377825:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
INFO: stdout 2025-10-31T03:28:52.377825:Chris Rorden's dcm2niiX version v1.0.20220720  (JP2:OpenJPEG) (JP-LS:CharLS) GCC10.2.1 x86-64 (64-bit Linux)
251031-03:28:52,378 nipype.interface INFO:
	 stdout 2025-10-31T03:28:52.377825:Found 4 DICOM file(s)
INFO: stdout 2025-10-31T03:28:52.377825:Found 4 DICOM file(s)
251031-03:28:52,378 nipype.interface INFO:
	 stdout 2025-10-31T03:28:52.377825:Convert 4 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func/sub-001_task-rest_bold_heudiconv260 (64x64x44x4)
INFO: stdout 2025-10-31T03:28:52.377825:Convert 4 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func/sub-001_task-rest_bold_heudiconv260 (64x64x44x4)
251031-03:28:52,459 nipype.interface INFO:
	 stdout 2025-10-31T03:28:52.458955:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func/sub-001_task-rest_bold_heudiconv260.nii"
INFO: stdout 2025-10-31T03:28:52.458955:Compress: "/usr/bin/pigz" -b 960 -n -f -6 "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func/sub-001_task-rest_bold_heudiconv260.nii"
251031-03:28:52,459 nipype.interface INFO:
	 stdout 2025-10-31T03:28:52.458955:Conversion required 0.097827 seconds (0.017978 for core code).
INFO: stdout 2025-10-31T03:28:52.458955:Conversion required 0.097827 seconds (0.017978 for core code).
251031-03:28:52,490 nipype.workflow INFO:
	 [Node] Finished "convert", elapsed time 0.166112s.
INFO: [Node] Finished "convert", elapsed time 0.166112s.
251031-03:28:52,741 nipype.workflow INFO:
	 [Node] Setting-up "embedder" in "/tmp/embedmetarrrjqjql/embedder".
INFO: [Node] Setting-up "embedder" in "/tmp/embedmetarrrjqjql/embedder".
251031-03:28:52,744 nipype.workflow INFO:
	 [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
INFO: [Node] Executing "embedder" <nipype.interfaces.utility.wrappers.Function>
251031-03:28:52,885 nipype.workflow INFO:
	 [Node] Finished "embedder", elapsed time 0.140037s.
INFO: [Node] Finished "embedder", elapsed time 0.140037s.
INFO: Post-treating /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/func/sub-001_task-rest_bold.json file
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_scout__dup-01 (128 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat . Converter: dcm2niix . Output types: ('dicom',)
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_scout__dup-02 (128 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat . Converter: dcm2niix . Output types: ('dicom',)
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_scout__dup-03 (5 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat . Converter: dcm2niix . Output types: ('dicom',)
INFO: Converting /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat/sub-001_scout__dup-04 (3 DICOMs) -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001/anat . Converter: dcm2niix . Output types: ('dicom',)
INFO: Adding "IntendedFor" to the fieldmaps in /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben/sub-001.
INFO: Populating template files under /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben
INFO: PROCESSING DONE: {'subject': '001', 'outdir': '/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv_reproin_bids/Patterson/Coben', 'session': None}

2.3. Using bidscoin (automated workflow)

BIDScoin requires the source data repository to be organized according to a subject/[session]/data structure where data folder can be structured in DICOM series layout, DICOMDIR layout, flat DICOM layout. Refer to this doc for more details.

To perform BIDS conversion, run:

• (1a) bidsmapper command

• once bidsmapper finishes, it automatically launches (1b) the bidseditor. Note: The --automated flag skips the manual editing step with bidseditor

• (2) bidscoiner command

import module
await module.load('bidscoin/4.3.3')

%%bash
mkdir bidscoin_bids
bidsmapper ./heudiconv-reproin-example/REPROIN/dicom ./bidscoin_bids --subprefix '00' --sesprefix 'Patterson_Coben' --automated  # Scans your data and creates a study bidsmap non-interactively
bidscoiner ./heudiconv-reproin-example/REPROIN/dicom ./bidscoin_bids    # Converts your data to BIDS using the study bidsmap

INFO | 
INFO | -------------- START BIDSmapper ------------
INFO | >>> bidsmapper sourcefolder=/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom bidsfolder=/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids bidsmap=bidsmap.yaml template=/home/jovyan/.bidscoin/4.3.3+qt5/templates/bidsmap_dccn.yaml plugins=[] subprefix=00 sesprefix=Patterson_Coben store=False force=False
INFO | No existing bidsmap file found: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/code/bidscoin/bidsmap.yaml
INFO | Reading: /home/jovyan/.bidscoin/4.3.3+qt5/templates/bidsmap_dccn.yaml
INFO | Checking the bidsmap run-items:
SUCCESS | All datatypes and options in the template bidsmap are valid
INFO | Mapping: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1 (subject 1/1)
VERBOSE | Executing plugin: dcm2niix2bids -> /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1
INFO | Discovered 'exclude' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4/IM-0012-0001-0001.dcm
INFO | Discovered 'anat' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6/IM-0001-0001.dcm
INFO | Discovered 'dwi' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9/IM-0004-0001.dcm
INFO | Discovered 'fmap' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7/IM-0002-0001-0001.dcm
INFO | Discovered 'fmap' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8/IM-0003-0001.dcm
INFO | Discovered 'fmap' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15/IM-0010-0001.dcm
INFO | Discovered 'func' DICOM sample: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16/IM-0011-0001.dcm
INFO | Checking the bidsmap run-items:            ubject/s]
SUCCESS | All run-items in the bidsmap are valid
INFO | bids-validator 1.14.6 test results (* = in .bidsignore):
INFO | False:	exclude/sub-DICOM_task-anatscoutMPRcor_acq-anatscout_echo-1_GR.*
SUCCESS | All generated bidsnames are BIDS-valid
INFO | Writing bidsmap to: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/code/bidscoin/bidsmap.yaml
INFO | -------------- FINISHED! -------------------
INFO | 
SUCCESS | No BIDScoin errors or warnings were reported
INFO | 
INFO | For the complete log see: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/code/bidscoin/bidsmapper.log
NB: That folder may contain privacy sensitive information, e.g. pathnames in logfiles and provenance data samples
INFO | 
INFO | -------------- START BIDScoiner 4.3.3+qt5: BIDS 1.9.0 ------------
INFO | >>> bidscoiner sourcefolder=/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom bidsfolder=/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids participant=None force=False bidsmap=bidsmap.yaml
INFO | Creating dataset description file: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/dataset_description.json
INFO | Creating a template README file (adjust it to your needs): /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/README
INFO | Reading: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/code/bidscoin/bidsmap.yaml
INFO | Checking the bidsmap run-items:
SUCCESS | All run-items in the bidsmap are valid
INFO | ------------------- Subject 1/1 -------------------
INFO | >>> Coining datasources in: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1
VERBOSE | Executing plugin: dcm2niix2bids ubject/s]
INFO | --> Leaving out: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/Localizers_4
INFO | --> Coining: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6
VERBOSE | Command:                        ubject/s]
dcm2niix -b y -z y -i n -l n -f "sub-1_ses-1_acq-anatT1wacqMPRAGE_T1w" -o "/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/anat" "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/anatT1w_acqMPRAGE_6"
VERBOSE | Output:                         ubject/s]
Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC12.2.0 x86-64 (64-bit Linux)
Found 240 DICOM file(s)
Convert 240 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/anat/sub-1_ses-1_acq-anatT1wacqMPRAGE_T1w (224x224x240x1)
Conversion required 1.804093 seconds (1.803850 for core code).

INFO | --> Coining: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9
VERBOSE | Command:                        ubject/s]
dcm2niix -b y -z y -i n -l n -f "sub-1_ses-1_acq-dwidirAP_dir-AP_dwi" -o "/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/dwi" "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/dwi_dirAP_9"
VERBOSE | Output:                         ubject/s]
Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC12.2.0 x86-64 (64-bit Linux)
Found 16 DICOM file(s)
Convert 16 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/dwi/sub-1_ses-1_acq-dwidirAP_dir-AP_dwi (122x122x66x16)
Conversion required 1.618262 seconds (1.618087 for core code).

INFO | --> Coining: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7
VERBOSE | Command:                        ubject/s]
dcm2niix -b y -z y -i n -l n -f "sub-1_ses-1_acq-fmapacq4mm_magnitude1" -o "/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap" "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_7"
VERBOSE | Output:                         ubject/s]
Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC12.2.0 x86-64 (64-bit Linux)
Found 88 DICOM file(s)
Slices not stacked: echo varies (TE 4.92, 7.38; echo 1, 2). Use 'merge 2D slices' option to force stacking
Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1_e1 (64x64x44x1)
Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1_e2 (64x64x44x1)
Conversion required 0.188144 seconds (0.187584 for core code).

VERBOSE | Found dcm2niix ['e1'] postfixes, renaming
/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1_e1.nii.gz ->
/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1.nii.gz
VERBOSE | Found dcm2niix ['e2'] postfixes, renaming
/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1_e2.nii.gz ->
/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude2.nii.gz
INFO | --> Coining: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8
VERBOSE | Command:                        ubject/s]
dcm2niix -b y -z y -i n -l n -f "sub-1_ses-1_acq-fmapacq4mm_phasediff" -o "/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap" "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_acq4mm_8"
VERBOSE | Output:                         ubject/s]
Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC12.2.0 x86-64 (64-bit Linux)
Found 44 DICOM file(s)
Convert 44 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_phasediff_e2_ph (64x64x44x1)
Conversion required 0.059617 seconds (0.058915 for core code).

VERBOSE | Found dcm2niix ['e2', 'ph'] postfixes, renaming
/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_phasediff_e2_ph.nii.gz ->
/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_phasediff.nii.gz
INFO | --> Coining: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15
VERBOSE | Command:                        ubject/s]
dcm2niix -b y -z y -i n -l n -f "sub-1_ses-1_acq-fmapdirPA_fieldmap" -o "/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap" "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/fmap_dirPA_15"
VERBOSE | Output:                         ubject/s]
Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC12.2.0 x86-64 (64-bit Linux)
Found 132 DICOM file(s)
Convert 132 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapdirPA_fieldmap (122x122x66x2)
Conversion required 0.367689 seconds (0.367502 for core code).

INFO | --> Coining: /home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16
VERBOSE | Command:                        ubject/s]
dcm2niix -b y -z y -i n -l n -f "sub-1_ses-1_task-functaskrest_dir-AP_bold" -o "/home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/func" "/home/jovyan/Git_repositories/example-notebooks/books/workflows/heudiconv-reproin-example/REPROIN/dicom/001/Patterson_Coben - 1/func_taskrest_16"
VERBOSE | Output:                         ubject/s]
Chris Rorden's dcm2niiX version v1.0.20240202  (JP2:OpenJPEG) (JP-LS:CharLS) GCC12.2.0 x86-64 (64-bit Linux)
Found 4 DICOM file(s)
Convert 4 DICOM as /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/func/sub-1_ses-1_task-functaskrest_dir-AP_bold (64x64x44x4)
Conversion required 0.079061 seconds (0.079052 for core code).

VERBOSE | Writing acquisition time data to: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/sub-1_ses-1_scans.tsv
VERBOSE | Writing sub-1 subject data to: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/participants.tsv
VERBOSE | Writing subject meta data to: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/participants.json
WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1.json (i.e. the fieldmap may not be used)
WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude2.json (i.e. the fieldmap may not be used)
WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_phasediff.json (i.e. the fieldmap may not be used)
WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapdirPA_fieldmap.json (i.e. the fieldmap may not be used)
INFO | -------------- FINISHED! ------------      /subject]
INFO | 
INFO | The following BIDScoin errors and warnings were reported:

>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
2025-10-31 03:32:35 - WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude1.json (i.e. the fieldmap may not be used)
2025-10-31 03:32:35 - WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_magnitude2.json (i.e. the fieldmap may not be used)
2025-10-31 03:32:35 - WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapacq4mm_phasediff.json (i.e. the fieldmap may not be used)
2025-10-31 03:32:35 - WARNING | Empty IntendedFor/B0FieldSource/B0FieldIdentifier fieldmap values in /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/sub-1/ses-1/fmap/sub-1_ses-1_acq-fmapdirPA_fieldmap.json (i.e. the fieldmap may not be used)
<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<

INFO | For the complete log see: /home/jovyan/Git_repositories/example-notebooks/books/workflows/bidscoin_bids/code/bidscoin/bidscoiner.log
NB: That folder may contain privacy sensitive information, e.g. pathnames in logfiles and provenance data samples

!tree ./bidscoin_bids/

./bidscoin_bids/
├── README
├── code
│   └── bidscoin
│       ├── bidscoiner.errors
│       ├── bidscoiner.log
│       ├── bidscoiner.tsv
│       ├── bidsmap.yaml
│       ├── bidsmapper.errors
│       └── bidsmapper.log
├── dataset_description.json
├── participants.json
├── participants.tsv
└── sub-1
    └── ses-1
        ├── anat
        │   ├── sub-1_ses-1_acq-anatT1wacqMPRAGE_T1w.json
        │   └── sub-1_ses-1_acq-anatT1wacqMPRAGE_T1w.nii.gz
        ├── dwi
        │   ├── sub-1_ses-1_acq-dwidirAP_dir-AP_dwi.bval
        │   ├── sub-1_ses-1_acq-dwidirAP_dir-AP_dwi.bvec
        │   ├── sub-1_ses-1_acq-dwidirAP_dir-AP_dwi.json
        │   └── sub-1_ses-1_acq-dwidirAP_dir-AP_dwi.nii.gz
        ├── fmap
        │   ├── sub-1_ses-1_acq-fmapacq4mm_magnitude1.json
        │   ├── sub-1_ses-1_acq-fmapacq4mm_magnitude1.nii.gz
        │   ├── sub-1_ses-1_acq-fmapacq4mm_magnitude2.json
        │   ├── sub-1_ses-1_acq-fmapacq4mm_magnitude2.nii.gz
        │   ├── sub-1_ses-1_acq-fmapacq4mm_phasediff.json
        │   ├── sub-1_ses-1_acq-fmapacq4mm_phasediff.nii.gz
        │   ├── sub-1_ses-1_acq-fmapdirPA_fieldmap.bval
        │   ├── sub-1_ses-1_acq-fmapdirPA_fieldmap.bvec
        │   ├── sub-1_ses-1_acq-fmapdirPA_fieldmap.json
        │   └── sub-1_ses-1_acq-fmapdirPA_fieldmap.nii.gz
        ├── func
        │   ├── sub-1_ses-1_task-functaskrest_dir-AP_bold.json
        │   └── sub-1_ses-1_task-functaskrest_dir-AP_bold.nii.gz
        └── sub-1_ses-1_scans.tsv

8 directories, 29 files

Dependencies in Jupyter/Python

• Using the package watermark to document system environment and software versions used in this notebook

%load_ext watermark

%watermark
%watermark --iversions

Last updated: 2025-10-31T03:32:37.738762+00:00

Python implementation: CPython
Python version       : 3.11.6
IPython version      : 8.16.1

Compiler    : GCC 12.3.0
OS          : Linux
Release     : 5.4.0-204-generic
Machine     : x86_64
Processor   : x86_64
CPU cores   : 32
Architecture: 64bit