Functional Imaging

Example notebooks for fMRI preprocessing and analysis.

• AFNI Preprocessing
• AFNI Preprocessing and GLM
• AFNI Preprocessing & Group Analysis
• Processing task-based FMRI with AFNI and afni_proc.py
• Scripted Higher-Level Analyses in FSL using FEAT derivatives
• Scripted First-Level Analyses in FSL using fMRIPrep data
• FSL Preprocessing and GLM
• Resting state with FSLnets
• NiWrap and Connectome Workbench
• DeepRetinotopy Toolbox
• Resting-State fMRI Analysis in R
• Nipype-SPM fMRI Analysis
• fMRIprep
• Nipype-FSL fMRI Analysis
• First-level GLM using Nipype FSL
• Second level GLM using Nipype FSL
• Third-level GLM using Nipype FSL
• Introduction to Preprocessing
• FreeSurfer: mri_vol2surf
• tedana: TE Dependent ANAlysis