fMRIprep Example#
Author: Steffen Bollmann
Setup Neurodesk#
%%capture
import os
import sys
IN_COLAB = 'google.colab' in sys.modules
if IN_COLAB:
os.environ["LD_PRELOAD"] = "";
os.environ["APPTAINER_BINDPATH"] = "/content,/tmp,/cvmfs"
os.environ["MPLCONFIGDIR"] = "/content/matplotlib-mpldir"
os.environ["LMOD_CMD"] = "/usr/share/lmod/lmod/libexec/lmod"
!curl -J -O https://raw.githubusercontent.com/NeuroDesk/neurocommand/main/googlecolab_setup.sh
!chmod +x googlecolab_setup.sh
!./googlecolab_setup.sh
os.environ["MODULEPATH"] = ':'.join(map(str, list(map(lambda x: os.path.join(os.path.abspath('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/'), x),os.listdir('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/')))))
# Output CPU information:
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : AuthenticAMD
model name : AMD EPYC-Rome Processor
Run fMRIprep#
# load fmriprep
import lmod
import os
await lmod.load('fmriprep/24.1.0')
await lmod.list()
['fmriprep/24.1.0']
# Request a freesurfer license and store it in your homedirectory. This is just an exampe - please replace with your license id:
!echo "Steffen.Bollmann@cai.uq.edu.au" > ~/.license
!echo "21029" >> ~/.license
!echo "*Cqyn12sqTCxo" >> ~/.license
!echo "FSxgcvGkNR59Y" >> ~/.license
# download data
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-08
%%bash
export SUBJECTS_DIR=$PWD/fmriprep-freesurfer-dir
export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=2
export MPLCONFIGDIR=~/matplotlib-mpldir
fmriprep ds000102/ fmriprep-output participant \
--fs-license-file ~/.license \
--output-spaces T1w MNI152NLin2009cAsym fsaverage fsnative \
--participant-label 08 \
--nprocs $ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS \
--mem 10000 \
--skip_bids_validation \
--fs-subjects-dir $SUBJECTS_DIR \
-v
241015-23:25:18,323 nipype.workflow IMPORTANT:
Running fMRIPrep version 24.1.0
License NOTICE ##################################################
fMRIPrep 24.1.0
Copyright The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
This software may be distributed through an add-on package called
"Docker Wrapper" that is under the BSD 3-clause License.
#################################################################
241015-23:25:18,365 nipype.workflow IMPORTANT:
Building fMRIPrep's workflow:
* BIDS dataset path: /home/jovyan/example-notebooks/books/functional_imaging/ds000102.
* Participant list: ['08'].
* Run identifier: 20241015-232429_15780f30-1c17-4b2e-8c7c-502ef33980db.
* Output spaces: T1w MNI152NLin2009cAsym:res-native fsaverage:den-164k fsnative.
* Pre-run FreeSurfer's SUBJECTS_DIR: /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-freesurfer-dir.
241015-23:25:20,373 nipype.workflow INFO:
ANAT Stage 1: Adding template workflow
241015-23:25:23,18 nipype.workflow INFO:
ANAT Stage 2: Preparing brain extraction workflow
241015-23:25:23,262 nipype.workflow INFO:
ANAT Stage 3: Preparing segmentation workflow
241015-23:25:23,279 nipype.workflow INFO:
ANAT Stage 4: Preparing normalization workflow for ['MNI152NLin2009cAsym']
241015-23:25:23,308 nipype.workflow INFO:
ANAT Stage 5: Preparing surface reconstruction workflow
241015-23:25:23,362 nipype.workflow INFO:
ANAT Stage 6: Preparing mask refinement workflow
241015-23:25:23,367 nipype.workflow INFO:
ANAT No T2w images provided - skipping Stage 7
241015-23:25:23,367 nipype.workflow INFO:
ANAT Stage 8: Creating GIFTI surfaces for ['white', 'pial', 'midthickness', 'sphere_reg', 'sphere']
241015-23:25:23,408 nipype.workflow INFO:
ANAT Stage 8: Creating GIFTI metrics for ['thickness', 'sulc']
241015-23:25:23,425 nipype.workflow INFO:
ANAT Stage 8a: Creating cortical ribbon mask
241015-23:25:23,434 nipype.workflow INFO:
ANAT Stage 9: Creating fsLR registration sphere
241015-23:25:23,450 nipype.workflow INFO:
ANAT Stage 10: Creating MSM-Sulc registration sphere
241015-23:25:23,947 nipype.workflow INFO:
No single-band-reference found for sub-08_task-flanker_run-1_bold.nii.gz.
241015-23:25:24,223 nipype.workflow INFO:
Stage 1: Adding HMC boldref workflow
241015-23:25:24,250 nipype.workflow INFO:
Stage 2: Adding motion correction workflow
241015-23:25:24,288 nipype.workflow INFO:
Stage 3: Adding coregistration boldref workflow
241015-23:25:24,753 nipype.workflow INFO:
No single-band-reference found for sub-08_task-flanker_run-2_bold.nii.gz.
241015-23:25:24,858 nipype.workflow INFO:
Stage 1: Adding HMC boldref workflow
241015-23:25:24,871 nipype.workflow INFO:
Stage 2: Adding motion correction workflow
241015-23:25:24,882 nipype.workflow INFO:
Stage 3: Adding coregistration boldref workflow
241015-23:25:33,142 nipype.workflow INFO:
fMRIPrep workflow graph with 580 nodes built successfully.
241015-23:26:06,865 nipype.workflow IMPORTANT:
fMRIPrep started!
241015-23:26:09,448 nipype.workflow INFO:
Workflow fmriprep_24_1_wf settings: ['check', 'execution', 'logging', 'monitoring']
241015-23:26:10,0 nipype.workflow INFO:
Running in parallel.
241015-23:26:10,4 nipype.workflow WARNING:
Some nodes exceed the total amount of memory available (10.00GB).
241015-23:26:10,19 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:26:10,374 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db".
241015-23:26:10,377 nipype.workflow INFO:
[Node] Executing "fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db" <niworkflows.interfaces.bids.BIDSFreeSurferDir>
241015-23:26:13,148 nipype.workflow INFO:
[Node] Finished "fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db", elapsed time 2.762988s.
241015-23:26:13,152 nipype.workflow INFO:
[Job 0] Completed (fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db).
241015-23:26:13,471 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.about" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/about".
241015-23:26:13,477 nipype.workflow INFO:
[Node] Executing "about" <fmriprep.interfaces.reports.AboutSummary>
241015-23:26:13,478 nipype.workflow INFO:
[Node] Finished "about", elapsed time 0.000432s.
241015-23:26:13,481 nipype.workflow INFO:
[Job 2] Completed (fmriprep_24_1_wf.sub_08_wf.about).
241015-23:26:13,838 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 17 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl
* fmriprep_24_1_wf.sub_08_wf.bidssrc
241015-23:26:20,232 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_tmpl".
241015-23:26:20,237 nipype.workflow INFO:
[Node] Executing "res_tmpl" <niworkflows.interfaces.nibabel.RegridToZooms>
241015-23:26:21,277 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bidssrc" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bidssrc".
241015-23:26:21,279 nipype.workflow INFO:
[Node] Executing "bidssrc" <niworkflows.interfaces.bids.BIDSDataGrabber>
241015-23:26:21,287 nipype.interface INFO:
No "t2w" images found for sub-08
241015-23:26:21,287 nipype.interface INFO:
No "flair" images found for sub-08
241015-23:26:21,287 nipype.interface INFO:
No "fmap" images found for sub-08
241015-23:26:21,287 nipype.interface INFO:
No "sbref" images found for sub-08
241015-23:26:21,287 nipype.interface INFO:
No "roi" images found for sub-08
241015-23:26:21,287 nipype.interface INFO:
No "pet" images found for sub-08
241015-23:26:21,287 nipype.interface INFO:
No "asl" images found for sub-08
241015-23:26:21,288 nipype.workflow INFO:
[Node] Finished "bidssrc", elapsed time 0.000749s.
241015-23:26:21,839 nipype.workflow INFO:
[Job 1] Completed (fmriprep_24_1_wf.sub_08_wf.bidssrc).
241015-23:26:21,844 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 20 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl
241015-23:26:22,134 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/full_wm".
241015-23:26:22,138 nipype.workflow INFO:
[Node] Executing "full_wm" <nipype.interfaces.utility.wrappers.Function>
241015-23:26:23,49 nipype.workflow INFO:
[Node] Finished "res_tmpl", elapsed time 2.804299s.
241015-23:26:23,236 nipype.workflow INFO:
[Node] Finished "full_wm", elapsed time 1.097074s.
241015-23:26:23,839 nipype.workflow INFO:
[Job 3] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl).
241015-23:26:23,842 nipype.workflow INFO:
[Job 4] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm).
241015-23:26:23,845 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:26:24,185 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/val_bold".
241015-23:26:24,188 nipype.workflow INFO:
[Node] Executing "val_bold" <niworkflows.interfaces.header.ValidateImage>
241015-23:26:24,277 nipype.workflow INFO:
[Node] Finished "val_bold", elapsed time 0.08823s.
241015-23:26:24,329 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_tmpl".
241015-23:26:24,331 nipype.workflow INFO:
[Node] Executing "lap_tmpl" <nipype.interfaces.ants.utils.ImageMath>
241015-23:26:25,841 nipype.workflow INFO:
[Job 6] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold).
241015-23:26:25,845 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
241015-23:26:26,174 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/get_dummy".
241015-23:26:26,177 nipype.workflow INFO:
[Node] Executing "get_dummy" <niworkflows.interfaces.bold.NonsteadyStatesDetector>
241015-23:26:27,283 nipype.workflow INFO:
[Node] Finished "get_dummy", elapsed time 1.104616s.
241015-23:26:27,841 nipype.workflow INFO:
[Job 7] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).
241015-23:26:27,845 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 19 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
241015-23:26:28,139 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/sources".
241015-23:26:28,142 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:26:28,143 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000407s.
241015-23:26:29,841 nipype.workflow INFO:
[Job 8] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).
241015-23:26:29,846 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
241015-23:26:30,213 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/sources".
241015-23:26:30,218 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:26:30,220 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000599s.
241015-23:26:31,842 nipype.workflow INFO:
[Job 9] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources).
241015-23:26:31,847 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
241015-23:26:32,191 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/sources".
241015-23:26:32,196 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:26:32,198 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000971s.
241015-23:26:33,841 nipype.workflow INFO:
[Job 10] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources).
241015-23:26:33,845 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
241015-23:26:34,169 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/bold_source".
241015-23:26:34,172 nipype.workflow INFO:
[Node] Executing "bold_source" <nipype.interfaces.utility.base.Select>
241015-23:26:34,173 nipype.workflow INFO:
[Node] Finished "bold_source", elapsed time 0.000436s.
241015-23:26:35,843 nipype.workflow INFO:
[Job 11] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source).
241015-23:26:35,847 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
241015-23:26:36,217 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/val_bold".
241015-23:26:36,220 nipype.workflow INFO:
[Node] Executing "val_bold" <niworkflows.interfaces.header.ValidateImage>
241015-23:26:36,310 nipype.workflow INFO:
[Node] Finished "val_bold", elapsed time 0.089257s.
241015-23:26:37,529 nipype.workflow INFO:
[Node] Finished "lap_tmpl", elapsed time 12.835325s.
241015-23:26:37,843 nipype.workflow INFO:
[Job 5] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl).
241015-23:26:37,846 nipype.workflow INFO:
[Job 12] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold).
241015-23:26:37,849 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:26:38,215 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/get_dummy".
241015-23:26:38,219 nipype.workflow INFO:
[Node] Executing "get_dummy" <niworkflows.interfaces.bold.NonsteadyStatesDetector>
241015-23:26:39,235 nipype.workflow INFO:
[Node] Finished "get_dummy", elapsed time 1.014578s.
241015-23:26:39,843 nipype.workflow INFO:
[Job 13] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).
241015-23:26:39,847 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources
241015-23:26:40,164 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/sources".
241015-23:26:40,169 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:26:40,171 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000361s.
241015-23:26:40,692 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/sources".
241015-23:26:40,695 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:26:40,697 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000394s.
241015-23:26:41,844 nipype.workflow INFO:
[Job 14] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).
241015-23:26:41,846 nipype.workflow INFO:
[Job 15] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources).
241015-23:26:41,849 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:26:42,217 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/sources".
241015-23:26:42,218 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/bold_source".
241015-23:26:42,221 nipype.workflow INFO:
[Node] Executing "bold_source" <nipype.interfaces.utility.base.Select>
241015-23:26:42,223 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:26:42,223 nipype.workflow INFO:
[Node] Finished "bold_source", elapsed time 0.000915s.
241015-23:26:42,225 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000537s.
241015-23:26:43,844 nipype.workflow INFO:
[Job 16] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources).
241015-23:26:43,846 nipype.workflow INFO:
[Job 17] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source).
241015-23:26:43,850 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:26:44,199 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/split_desc".
241015-23:26:44,201 nipype.workflow INFO:
[Node] Executing "split_desc" <smriprep.interfaces.templateflow.TemplateDesc>
241015-23:26:44,203 nipype.workflow INFO:
[Node] Finished "split_desc", elapsed time 0.000223s.
241015-23:26:44,205 nipype.workflow INFO:
[Job 18] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc).
241015-23:26:44,501 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource".
241015-23:26:44,504 nipype.workflow INFO:
[Node] Executing "spacesource" <niworkflows.interfaces.space.SpaceDataSource>
241015-23:26:44,506 nipype.workflow INFO:
[Node] Finished "spacesource", elapsed time 0.000283s.
241015-23:26:44,508 nipype.workflow INFO:
[Job 19] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource).
241015-23:26:44,817 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource".
241015-23:26:44,820 nipype.workflow INFO:
[Node] Executing "spacesource" <niworkflows.interfaces.space.SpaceDataSource>
241015-23:26:44,821 nipype.workflow INFO:
[Node] Finished "spacesource", elapsed time 0.000234s.
241015-23:26:44,823 nipype.workflow INFO:
[Job 20] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource).
241015-23:26:45,132 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bids_info" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bids_info".
241015-23:26:45,137 nipype.workflow INFO:
[Node] Executing "bids_info" <niworkflows.interfaces.bids.BIDSInfo>
241015-23:26:45,142 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_ref_dimensions".
241015-23:26:45,148 nipype.workflow INFO:
[Node] Executing "anat_ref_dimensions" <niworkflows.interfaces.images.TemplateDimensions>
241015-23:26:45,152 nipype.workflow INFO:
[Node] Finished "bids_info", elapsed time 0.013513s.
241015-23:26:45,667 nipype.workflow INFO:
[Node] Finished "anat_ref_dimensions", elapsed time 0.517631s.
241015-23:26:45,844 nipype.workflow INFO:
[Job 21] Completed (fmriprep_24_1_wf.sub_08_wf.bids_info).
241015-23:26:45,847 nipype.workflow INFO:
[Job 22] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions).
241015-23:26:45,851 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:26:46,226 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.ds_report_about" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_about".
241015-23:26:46,234 nipype.workflow INFO:
[Node] Executing "ds_report_about" <fmriprep.interfaces.DerivativesDataSink>
241015-23:26:46,253 nipype.workflow INFO:
[Node] Finished "ds_report_about", elapsed time 0.018033s.
241015-23:26:46,256 nipype.workflow INFO:
[Job 23] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_about).
241015-23:26:46,558 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation".
241015-23:26:46,561 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_tmpl".
241015-23:26:46,566 nipype.workflow INFO:
[Node] Executing "ds_report_validation" <fmriprep.interfaces.DerivativesDataSink>
241015-23:26:46,566 nipype.workflow INFO:
[Node] Executing "mrg_tmpl" <nipype.interfaces.utility.base.Merge>
241015-23:26:46,567 nipype.workflow INFO:
[Node] Finished "mrg_tmpl", elapsed time 0.000395s.
241015-23:26:46,580 nipype.workflow INFO:
[Node] Finished "ds_report_validation", elapsed time 0.012721s.
241015-23:26:46,582 nipype.workflow INFO:
[Job 25] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).
241015-23:26:46,909 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg".
241015-23:26:46,918 nipype.workflow INFO:
[Node] Executing "gen_avg" <niworkflows.interfaces.images.RobustAverage>
241015-23:26:47,844 nipype.workflow INFO:
[Job 24] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl).
241015-23:26:47,849 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
241015-23:26:48,231 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans".
241015-23:26:48,235 nipype.workflow INFO:
[Node] Executing "calc_dummy_scans" <nipype.interfaces.utility.wrappers.Function>
241015-23:26:48,237 nipype.workflow INFO:
[Node] Finished "calc_dummy_scans", elapsed time 0.000635s.
241015-23:26:48,239 nipype.workflow INFO:
[Job 27] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).
241015-23:26:48,543 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/validate_bold".
241015-23:26:48,546 nipype.workflow INFO:
[Node] Executing "validate_bold" <niworkflows.interfaces.header.ValidateImage>
241015-23:26:48,570 nipype.interface INFO:
stderr 2024-10-15T23:26:48.570804:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]
241015-23:26:48,571 nipype.interface INFO:
stderr 2024-10-15T23:26:48.570804:++ Authored by: RW Cox
241015-23:26:48,574 nipype.interface INFO:
stderr 2024-10-15T23:26:48.574726:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-1_bold_sliced.nii.gz to FLOAT32
241015-23:26:48,574 nipype.interface INFO:
stderr 2024-10-15T23:26:48.574726: Warnings of this type will be muted for this session.
241015-23:26:48,574 nipype.interface INFO:
stderr 2024-10-15T23:26:48.574726: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
241015-23:26:48,580 nipype.interface INFO:
stderr 2024-10-15T23:26:48.580785:++ Coarse del was 10, replaced with 4
241015-23:26:48,638 nipype.workflow INFO:
[Node] Finished "validate_bold", elapsed time 0.09087s.
241015-23:26:49,845 nipype.workflow INFO:
[Job 28] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold).
241015-23:26:49,854 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
241015-23:26:50,236 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation".
241015-23:26:50,243 nipype.workflow INFO:
[Node] Executing "ds_report_validation" <fmriprep.interfaces.DerivativesDataSink>
241015-23:26:50,257 nipype.workflow INFO:
[Node] Finished "ds_report_validation", elapsed time 0.012762s.
241015-23:26:50,260 nipype.workflow INFO:
[Job 29] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).
241015-23:26:50,668 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg".
241015-23:26:50,679 nipype.workflow INFO:
[Node] Executing "gen_avg" <niworkflows.interfaces.images.RobustAverage>
241015-23:26:51,848 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 14 jobs ready. Free memory (GB): 8.00/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
241015-23:26:52,73 nipype.interface INFO:
stderr 2024-10-15T23:26:52.073803:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]
241015-23:26:52,74 nipype.interface INFO:
stderr 2024-10-15T23:26:52.073803:++ Authored by: RW Cox
241015-23:26:52,74 nipype.interface INFO:
stderr 2024-10-15T23:26:52.074596:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-2_bold_sliced.nii.gz to FLOAT32
241015-23:26:52,74 nipype.interface INFO:
stderr 2024-10-15T23:26:52.074596: Warnings of this type will be muted for this session.
241015-23:26:52,74 nipype.interface INFO:
stderr 2024-10-15T23:26:52.074596: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
241015-23:26:52,75 nipype.interface INFO:
stderr 2024-10-15T23:26:52.075093:++ Coarse del was 10, replaced with 4
241015-23:27:05,36 nipype.interface INFO:
stderr 2024-10-15T23:27:05.035900:++ Max displacement in automask = 0.12 (mm) at sub-brick 18
241015-23:27:05,36 nipype.interface INFO:
stderr 2024-10-15T23:27:05.035900:++ Max delta displ in automask = 0.10 (mm) at sub-brick 5
241015-23:27:07,21 nipype.workflow INFO:
[Node] Finished "gen_avg", elapsed time 20.101864s.
241015-23:27:07,849 nipype.workflow INFO:
[Job 26] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).
241015-23:27:07,853 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
241015-23:27:08,205 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans".
241015-23:27:08,210 nipype.workflow INFO:
[Node] Executing "calc_dummy_scans" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:08,212 nipype.workflow INFO:
[Node] Finished "calc_dummy_scans", elapsed time 0.000776s.
241015-23:27:08,215 nipype.workflow INFO:
[Job 31] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).
241015-23:27:08,528 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/validate_bold".
241015-23:27:08,532 nipype.workflow INFO:
[Node] Executing "validate_bold" <niworkflows.interfaces.header.ValidateImage>
241015-23:27:08,621 nipype.workflow INFO:
[Node] Finished "validate_bold", elapsed time 0.087389s.
241015-23:27:09,850 nipype.workflow INFO:
[Job 32] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold).
241015-23:27:09,854 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
241015-23:27:10,255 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/tf_select".
241015-23:27:10,259 nipype.workflow INFO:
[Node] Executing "tf_select" <smriprep.interfaces.templateflow.TemplateFlowSelect>
241015-23:27:10,440 nipype.workflow INFO:
[Node] Finished "tf_select", elapsed time 0.179621s.
241015-23:27:10,442 nipype.workflow INFO:
[Job 33] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select).
241015-23:27:10,788 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/fmt_cohort".
241015-23:27:10,792 nipype.workflow INFO:
[Node] Executing "fmt_cohort" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:10,793 nipype.workflow INFO:
[Node] Finished "fmt_cohort", elapsed time 0.000689s.
241015-23:27:10,795 nipype.workflow INFO:
[Job 34] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort).
241015-23:27:11,115 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid".
241015-23:27:11,118 nipype.workflow INFO:
[Node] Executing "gen_tplid" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:11,120 nipype.workflow INFO:
[Node] Finished "gen_tplid", elapsed time 0.00067s.
241015-23:27:11,122 nipype.workflow INFO:
[Job 35] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid).
241015-23:27:11,433 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl".
241015-23:27:11,437 nipype.workflow INFO:
[Node] Executing "select_tpl" <smriprep.interfaces.templateflow.TemplateFlowSelect>
241015-23:27:11,618 nipype.workflow INFO:
[Node] Finished "select_tpl", elapsed time 0.179943s.
241015-23:27:11,620 nipype.workflow INFO:
[Job 36] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl).
241015-23:27:11,926 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid".
241015-23:27:11,929 nipype.workflow INFO:
[Node] Executing "gen_tplid" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:11,931 nipype.workflow INFO:
[Node] Finished "gen_tplid", elapsed time 0.000554s.
241015-23:27:11,933 nipype.workflow INFO:
[Job 37] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid).
241015-23:27:12,221 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl".
241015-23:27:12,224 nipype.workflow INFO:
[Node] Executing "select_tpl" <smriprep.interfaces.templateflow.TemplateFlowSelect>
241015-23:27:12,308 nipype.interface INFO:
stderr 2024-10-15T23:27:12.307938:++ Max displacement in automask = 1.01 (mm) at sub-brick 17
241015-23:27:12,308 nipype.interface INFO:
stderr 2024-10-15T23:27:12.307938:++ Max delta displ in automask = 0.39 (mm) at sub-brick 17
241015-23:27:12,369 nipype.workflow INFO:
[Node] Finished "select_tpl", elapsed time 0.144077s.
241015-23:27:12,371 nipype.workflow INFO:
[Job 38] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl).
241015-23:27:12,658 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/summary".
241015-23:27:12,664 nipype.workflow INFO:
[Node] Executing "summary" <fmriprep.interfaces.reports.SubjectSummary>
241015-23:27:12,668 nipype.workflow INFO:
[Node] Finished "summary", elapsed time 0.002818s.
241015-23:27:12,669 nipype.workflow INFO:
[Job 39] Completed (fmriprep_24_1_wf.sub_08_wf.summary).
241015-23:27:12,931 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/fs_isrunning".
241015-23:27:12,932 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 8.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
241015-23:27:12,937 nipype.workflow INFO:
[Node] Executing "fs_isrunning" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:12,940 nipype.workflow INFO:
[Node] Finished "fs_isrunning", elapsed time 0.001409s.
241015-23:27:14,0 nipype.workflow INFO:
[Node] Finished "gen_avg", elapsed time 23.320179s.
241015-23:27:14,933 nipype.workflow INFO:
[Job 30] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).
241015-23:27:14,935 nipype.workflow INFO:
[Job 40] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning).
241015-23:27:14,938 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:27:15,329 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_t1w_mask_wf/raw_sources".
241015-23:27:15,335 nipype.workflow INFO:
[Node] Executing "raw_sources" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:15,337 nipype.workflow INFO:
[Node] Finished "raw_sources", elapsed time 0.000895s.
241015-23:27:15,388 nipype.workflow INFO:
[Node] Setting-up "_denoise0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/denoise/mapflow/_denoise0".
241015-23:27:15,390 nipype.workflow INFO:
[Node] Executing "_denoise0" <nipype.interfaces.ants.segmentation.DenoiseImage>
241015-23:27:16,934 nipype.workflow INFO:
[Job 42] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources).
241015-23:27:16,939 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:27:17,252 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_ribbon_mask_wf/raw_sources".
241015-23:27:17,256 nipype.workflow INFO:
[Node] Executing "raw_sources" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:17,259 nipype.workflow INFO:
[Node] Finished "raw_sources", elapsed time 0.000847s.
241015-23:27:18,934 nipype.workflow INFO:
[Job 43] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources).
241015-23:27:18,938 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:27:19,250 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/t1w_conform_check".
241015-23:27:19,254 nipype.workflow INFO:
[Node] Executing "t1w_conform_check" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:19,255 nipype.workflow INFO:
[Node] Finished "t1w_conform_check", elapsed time 0.00059s.
241015-23:27:19,257 nipype.workflow INFO:
[Job 44] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check).
241015-23:27:19,536 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/fmapref_buffer".
241015-23:27:19,541 nipype.workflow INFO:
[Node] Executing "fmapref_buffer" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:19,546 nipype.workflow INFO:
[Node] Finished "fmapref_buffer", elapsed time 0.00407s.
241015-23:27:20,935 nipype.workflow INFO:
[Job 45] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer).
241015-23:27:20,939 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:27:22,75 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref".
241015-23:27:22,82 nipype.workflow INFO:
[Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
241015-23:27:22,111 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-hmc_boldref.nii.gz dtype from int16 to float32
241015-23:27:22,242 nipype.workflow INFO:
[Node] Finished "ds_boldref", elapsed time 0.157856s.
241015-23:27:22,245 nipype.workflow INFO:
[Job 46] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).
241015-23:27:22,662 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/mcflirt".
241015-23:27:22,668 nipype.workflow INFO:
[Node] Executing "mcflirt" <nipype.interfaces.fsl.preprocess.MCFLIRT>
241015-23:27:22,937 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:27:52,827 nipype.workflow INFO:
[Node] Finished "mcflirt", elapsed time 30.157369s.
241015-23:27:52,942 nipype.workflow INFO:
[Job 47] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt).
241015-23:27:52,946 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:27:53,312 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/fmapref_buffer".
241015-23:27:53,317 nipype.workflow INFO:
[Node] Executing "fmapref_buffer" <nipype.interfaces.utility.wrappers.Function>
241015-23:27:53,318 nipype.workflow INFO:
[Node] Finished "fmapref_buffer", elapsed time 0.000777s.
241015-23:27:54,942 nipype.workflow INFO:
[Job 48] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer).
241015-23:27:54,946 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:27:55,294 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref".
241015-23:27:55,302 nipype.workflow INFO:
[Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
241015-23:27:55,331 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-hmc_boldref.nii.gz dtype from int16 to float32
241015-23:27:55,422 nipype.workflow INFO:
[Node] Finished "ds_boldref", elapsed time 0.118382s.
241015-23:27:55,425 nipype.workflow INFO:
[Job 49] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).
241015-23:27:55,759 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/mcflirt".
241015-23:27:55,766 nipype.workflow INFO:
[Node] Executing "mcflirt" <nipype.interfaces.fsl.preprocess.MCFLIRT>
241015-23:27:56,945 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:28:34,209 nipype.workflow INFO:
[Node] Finished "mcflirt", elapsed time 38.442083s.
241015-23:28:34,952 nipype.workflow INFO:
[Job 50] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt).
241015-23:28:34,958 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 12 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:28:35,391 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.ds_report_summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_summary".
241015-23:28:35,400 nipype.workflow INFO:
[Node] Executing "ds_report_summary" <fmriprep.interfaces.DerivativesDataSink>
241015-23:28:35,417 nipype.workflow INFO:
[Node] Finished "ds_report_summary", elapsed time 0.016065s.
241015-23:28:35,420 nipype.workflow INFO:
[Job 51] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_summary).
241015-23:28:35,822 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/ds_t1w_conform_report".
241015-23:28:35,829 nipype.workflow INFO:
[Node] Executing "ds_t1w_conform_report" <smriprep.interfaces.DerivativesDataSink>
241015-23:28:35,843 nipype.workflow INFO:
[Node] Finished "ds_t1w_conform_report", elapsed time 0.012284s.
241015-23:28:35,845 nipype.workflow INFO:
[Job 53] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report).
241015-23:28:36,232 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff".
241015-23:28:36,238 nipype.workflow INFO:
[Node] Executing "init_aff" <nipype.interfaces.ants.utils.AI>
241015-23:28:36,955 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:31:51,421 nipype.workflow INFO:
[Node] Finished "init_aff", elapsed time 195.181727s.
241015-23:31:52,997 nipype.workflow INFO:
[Job 54] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).
241015-23:31:53,3 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:31:53,388 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/sources".
241015-23:31:53,395 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:31:53,397 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000517s.
241015-23:31:54,997 nipype.workflow INFO:
[Job 55] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).
241015-23:31:55,2 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:31:55,502 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/fsl2itk".
241015-23:31:55,550 nipype.workflow INFO:
[Node] Executing "fsl2itk" <niworkflows.interfaces.itk.MCFLIRT2ITK>
241015-23:31:55,550 nipype.interface WARNING:
Multithreading is deprecated. Remove the num_threads input.
241015-23:31:55,742 nipype.workflow INFO:
[Node] Finished "fsl2itk", elapsed time 0.19153s.
241015-23:31:56,997 nipype.workflow INFO:
[Job 56] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).
241015-23:31:57,2 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:31:57,986 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/normalize_motion".
241015-23:31:58,5 nipype.workflow INFO:
[Node] Executing "normalize_motion" <niworkflows.interfaces.confounds.NormalizeMotionParams>
241015-23:31:58,10 nipype.workflow INFO:
[Node] Finished "normalize_motion", elapsed time 0.004342s.
241015-23:31:58,998 nipype.workflow INFO:
[Job 57] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).
241015-23:31:59,2 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:31:59,317 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_rmsd_header".
241015-23:31:59,335 nipype.workflow INFO:
[Node] Executing "add_rmsd_header" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:31:59,337 nipype.workflow INFO:
[Node] Finished "add_rmsd_header", elapsed time 0.001749s.
241015-23:31:59,339 nipype.workflow INFO:
[Job 58] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header).
241015-23:31:59,630 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff".
241015-23:31:59,637 nipype.workflow INFO:
[Node] Executing "init_aff" <nipype.interfaces.ants.utils.AI>
241015-23:32:01,1 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:34:48,743 nipype.workflow INFO:
[Node] Finished "init_aff", elapsed time 169.104528s.
241015-23:34:49,36 nipype.workflow INFO:
[Job 59] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).
241015-23:34:49,41 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:34:49,543 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/sources".
241015-23:34:49,549 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:34:49,550 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000395s.
241015-23:34:51,36 nipype.workflow INFO:
[Job 60] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).
241015-23:34:51,42 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:34:51,428 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/fsl2itk".
241015-23:34:51,464 nipype.workflow INFO:
[Node] Executing "fsl2itk" <niworkflows.interfaces.itk.MCFLIRT2ITK>
241015-23:34:51,465 nipype.interface WARNING:
Multithreading is deprecated. Remove the num_threads input.
241015-23:34:51,571 nipype.workflow INFO:
[Node] Finished "fsl2itk", elapsed time 0.105607s.
241015-23:34:53,37 nipype.workflow INFO:
[Job 61] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).
241015-23:34:53,41 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:34:53,433 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/normalize_motion".
241015-23:34:53,451 nipype.workflow INFO:
[Node] Executing "normalize_motion" <niworkflows.interfaces.confounds.NormalizeMotionParams>
241015-23:34:53,456 nipype.workflow INFO:
[Node] Finished "normalize_motion", elapsed time 0.004203s.
241015-23:34:55,38 nipype.workflow INFO:
[Job 62] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).
241015-23:34:55,43 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:34:55,440 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_rmsd_header".
241015-23:34:55,460 nipype.workflow INFO:
[Node] Executing "add_rmsd_header" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:34:55,464 nipype.workflow INFO:
[Node] Finished "add_rmsd_header", elapsed time 0.001982s.
241015-23:34:55,467 nipype.workflow INFO:
[Job 63] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header).
241015-23:34:55,955 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm".
241015-23:34:55,967 nipype.workflow INFO:
[Node] Executing "norm" <niworkflows.interfaces.fixes.FixHeaderRegistration>
241015-23:34:57,40 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:05,383 nipype.workflow INFO:
[Node] Finished "norm", elapsed time 9.413491s.
241015-23:35:07,40 nipype.workflow INFO:
[Job 65] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).
241015-23:35:07,45 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:07,437 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/ds_xforms".
241015-23:35:07,445 nipype.workflow INFO:
[Node] Executing "ds_xforms" <fmriprep.interfaces.DerivativesDataSink>
241015-23:35:07,462 nipype.workflow INFO:
[Node] Finished "ds_xforms", elapsed time 0.015412s.
241015-23:35:07,465 nipype.workflow INFO:
[Job 66] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).
241015-23:35:07,933 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/fdisp".
241015-23:35:07,937 nipype.workflow INFO:
[Node] Executing "fdisp" <nipype.algorithms.confounds.FramewiseDisplacement>
241015-23:35:07,942 nipype.workflow INFO:
[Node] Finished "fdisp", elapsed time 0.003249s.
241015-23:35:09,40 nipype.workflow INFO:
[Job 67] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp).
241015-23:35:09,46 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:09,416 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_motion_headers".
241015-23:35:09,420 nipype.workflow INFO:
[Node] Executing "add_motion_headers" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:35:09,424 nipype.workflow INFO:
[Node] Finished "add_motion_headers", elapsed time 0.003198s.
241015-23:35:09,426 nipype.workflow INFO:
[Job 68] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers).
241015-23:35:09,793 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm".
241015-23:35:09,803 nipype.workflow INFO:
[Node] Executing "norm" <niworkflows.interfaces.fixes.FixHeaderRegistration>
241015-23:35:11,43 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:14,94 nipype.workflow INFO:
[Node] Finished "norm", elapsed time 4.288883s.
241015-23:35:15,41 nipype.workflow INFO:
[Job 69] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).
241015-23:35:15,45 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:15,422 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/ds_xforms".
241015-23:35:15,430 nipype.workflow INFO:
[Node] Executing "ds_xforms" <fmriprep.interfaces.DerivativesDataSink>
241015-23:35:15,442 nipype.workflow INFO:
[Node] Finished "ds_xforms", elapsed time 0.010779s.
241015-23:35:15,445 nipype.workflow INFO:
[Job 70] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).
241015-23:35:15,821 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/fdisp".
241015-23:35:15,826 nipype.workflow INFO:
[Node] Executing "fdisp" <nipype.algorithms.confounds.FramewiseDisplacement>
241015-23:35:15,831 nipype.workflow INFO:
[Node] Finished "fdisp", elapsed time 0.003762s.
241015-23:35:17,42 nipype.workflow INFO:
[Job 71] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp).
241015-23:35:17,46 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:17,457 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_motion_headers".
241015-23:35:17,462 nipype.workflow INFO:
[Node] Executing "add_motion_headers" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:35:17,466 nipype.workflow INFO:
[Node] Finished "add_motion_headers", elapsed time 0.003532s.
241015-23:35:17,469 nipype.workflow INFO:
[Job 72] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers).
241015-23:35:17,880 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
241015-23:35:17,886 nipype.workflow INFO:
[Node] Executing "map_brainmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
241015-23:35:19,45 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:19,153 nipype.workflow INFO:
[Node] Finished "map_brainmask", elapsed time 1.26608s.
241015-23:35:21,43 nipype.workflow INFO:
[Job 74] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
241015-23:35:21,48 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:21,500 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
241015-23:35:21,506 nipype.workflow INFO:
[Node] Executing "map_brainmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
241015-23:35:22,556 nipype.workflow INFO:
[Node] Finished "map_brainmask", elapsed time 1.048219s.
241015-23:35:23,44 nipype.workflow INFO:
[Job 75] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
241015-23:35:23,48 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:23,430 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header".
241015-23:35:23,435 nipype.workflow INFO:
[Node] Executing "fix_header" <niworkflows.interfaces.header.CopyHeader>
241015-23:35:23,505 nipype.workflow INFO:
[Node] Finished "fix_header", elapsed time 0.06871s.
241015-23:35:23,507 nipype.workflow INFO:
[Job 79] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).
241015-23:35:23,801 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header".
241015-23:35:23,806 nipype.workflow INFO:
[Node] Executing "fix_header" <niworkflows.interfaces.header.CopyHeader>
241015-23:35:23,857 nipype.workflow INFO:
[Node] Finished "fix_header", elapsed time 0.049541s.
241015-23:35:23,860 nipype.workflow INFO:
[Job 80] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).
241015-23:35:25,46 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:25,385 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct".
241015-23:35:25,392 nipype.workflow INFO:
[Node] Executing "n4_correct" <niworkflows.interfaces.fixes.FixN4BiasFieldCorrection>
241015-23:35:27,47 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:27,433 nipype.workflow INFO:
[Node] Finished "n4_correct", elapsed time 2.039906s.
241015-23:35:29,44 nipype.workflow INFO:
[Job 83] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).
241015-23:35:29,48 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:29,337 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct".
241015-23:35:29,343 nipype.workflow INFO:
[Node] Executing "n4_correct" <niworkflows.interfaces.fixes.FixN4BiasFieldCorrection>
241015-23:35:31,48 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:31,466 nipype.workflow INFO:
[Node] Finished "n4_correct", elapsed time 2.121278s.
241015-23:35:33,46 nipype.workflow INFO:
[Job 84] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).
241015-23:35:33,51 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:33,431 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
241015-23:35:33,437 nipype.workflow INFO:
[Node] Executing "skullstrip_first_pass" <nipype.interfaces.fsl.preprocess.BET>
241015-23:35:35,48 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:35,774 nipype.workflow INFO:
[Node] Finished "skullstrip_first_pass", elapsed time 2.331352s.
241015-23:35:37,45 nipype.workflow INFO:
[Job 88] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
241015-23:35:37,49 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:37,389 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref".
241015-23:35:37,398 nipype.workflow INFO:
[Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
241015-23:35:37,425 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-coreg_boldref.nii.gz dtype from int16 to float32
241015-23:35:37,524 nipype.workflow INFO:
[Node] Finished "ds_boldref", elapsed time 0.123477s.
241015-23:35:37,527 nipype.workflow INFO:
[Job 89] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).
241015-23:35:37,861 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
241015-23:35:37,866 nipype.workflow INFO:
[Node] Executing "skullstrip_first_pass" <nipype.interfaces.fsl.preprocess.BET>
241015-23:35:39,49 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:40,214 nipype.workflow INFO:
[Node] Finished "skullstrip_first_pass", elapsed time 2.346436s.
241015-23:35:41,47 nipype.workflow INFO:
[Job 90] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
241015-23:35:41,51 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:41,433 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref".
241015-23:35:41,445 nipype.workflow INFO:
[Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
241015-23:35:41,474 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-coreg_boldref.nii.gz dtype from int16 to float32
241015-23:35:41,577 nipype.workflow INFO:
[Node] Finished "ds_boldref", elapsed time 0.12996s.
241015-23:35:41,580 nipype.workflow INFO:
[Job 91] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).
241015-23:35:41,901 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate".
241015-23:35:41,905 nipype.workflow INFO:
[Node] Executing "first_dilate" <niworkflows.interfaces.nibabel.BinaryDilation>
241015-23:35:42,731 nipype.workflow INFO:
[Node] Finished "first_dilate", elapsed time 0.824911s.
241015-23:35:43,48 nipype.workflow INFO:
[Job 95] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).
241015-23:35:43,52 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:43,366 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldreg_wf/sources".
241015-23:35:43,371 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:35:43,372 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.00044s.
241015-23:35:45,47 nipype.workflow INFO:
[Job 96] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources).
241015-23:35:45,51 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:35:45,526 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/boldref_bold".
241015-23:35:45,531 nipype.workflow INFO:
[Node] Executing "boldref_bold" <fmriprep.interfaces.resampling.ResampleSeries>
241015-23:35:47,51 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:06,942 nipype.workflow INFO:
[Node] Finished "boldref_bold", elapsed time 21.410239s.
241015-23:36:07,51 nipype.workflow INFO:
[Job 97] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold).
241015-23:36:07,55 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:07,430 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref".
241015-23:36:07,453 nipype.workflow INFO:
[Node] Executing "gen_ref" <niworkflows.interfaces.nibabel.GenerateSamplingReference>
241015-23:36:09,54 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:10,930 nipype.workflow INFO:
[Node] Finished "gen_ref", elapsed time 3.47584s.
241015-23:36:11,52 nipype.workflow INFO:
[Job 98] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref).
241015-23:36:11,56 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:11,452 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate".
241015-23:36:11,457 nipype.workflow INFO:
[Node] Executing "first_dilate" <niworkflows.interfaces.nibabel.BinaryDilation>
241015-23:36:11,755 nipype.workflow INFO:
[Node] Finished "first_dilate", elapsed time 0.296964s.
241015-23:36:13,53 nipype.workflow INFO:
[Job 99] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).
241015-23:36:13,58 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:13,372 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldreg_wf/sources".
241015-23:36:13,380 nipype.workflow INFO:
[Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
241015-23:36:13,381 nipype.workflow INFO:
[Node] Finished "sources", elapsed time 0.000385s.
241015-23:36:15,54 nipype.workflow INFO:
[Job 100] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources).
241015-23:36:15,58 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:15,391 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/boldref_bold".
241015-23:36:15,399 nipype.workflow INFO:
[Node] Executing "boldref_bold" <fmriprep.interfaces.resampling.ResampleSeries>
241015-23:36:17,57 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
241015-23:36:22,4 nipype.workflow INFO:
[Node] Finished "_denoise0", elapsed time 546.131542s.
241015-23:36:23,55 nipype.workflow INFO:
[Job 41] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise).
241015-23:36:23,60 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
241015-23:36:23,516 nipype.workflow INFO:
[Node] Setting-up "_anat_conform0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_conform/mapflow/_anat_conform0".
241015-23:36:23,518 nipype.workflow INFO:
[Node] Executing "_anat_conform0" <niworkflows.interfaces.images.Conform>
241015-23:36:25,58 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
241015-23:36:26,637 nipype.workflow INFO:
[Node] Finished "_anat_conform0", elapsed time 3.11882s.
241015-23:36:27,56 nipype.workflow INFO:
[Job 52] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform).
241015-23:36:27,60 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
241015-23:36:27,417 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/get1st".
241015-23:36:27,422 nipype.workflow INFO:
[Node] Executing "get1st" <nipype.interfaces.utility.base.Select>
241015-23:36:27,424 nipype.workflow INFO:
[Node] Finished "get1st", elapsed time 0.000568s.
241015-23:36:29,56 nipype.workflow INFO:
[Job 64] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st).
241015-23:36:29,61 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
241015-23:36:29,459 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_validate".
241015-23:36:29,462 nipype.workflow INFO:
[Node] Executing "anat_validate" <niworkflows.interfaces.header.ValidateImage>
241015-23:36:32,735 nipype.workflow INFO:
[Node] Finished "boldref_bold", elapsed time 17.33471s.
241015-23:36:33,333 nipype.workflow INFO:
[Node] Finished "anat_validate", elapsed time 3.869044s.
241015-23:36:33,336 nipype.workflow INFO:
[Job 73] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate).
241015-23:36:33,724 nipype.workflow INFO:
[Job 101] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold).
241015-23:36:33,729 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.70/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref
241015-23:36:33,735 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref".
241015-23:36:33,756 nipype.workflow INFO:
[Node] Executing "gen_ref" <niworkflows.interfaces.nibabel.GenerateSamplingReference>
241015-23:36:34,160 nipype.workflow INFO:
[Node] Setting-up "_truncate_images0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0".
241015-23:36:34,163 nipype.workflow INFO:
[Node] Executing "_truncate_images0" <nipype.interfaces.ants.utils.ImageMath>
241015-23:36:35,728 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref
241015-23:36:38,544 nipype.workflow INFO:
[Node] Finished "gen_ref", elapsed time 4.787199s.
241015-23:36:39,726 nipype.workflow INFO:
[Job 102] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref).
241015-23:36:39,730 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images
241015-23:36:41,188 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/recon_config".
241015-23:36:41,197 nipype.workflow INFO:
[Node] Executing "recon_config" <niworkflows.interfaces.freesurfer.FSDetectInputs>
241015-23:36:41,287 nipype.workflow INFO:
[Node] Finished "recon_config", elapsed time 0.088071s.
241015-23:36:41,726 nipype.workflow INFO:
[Job 77] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config).
241015-23:36:41,731 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images
241015-23:36:41,790 nipype.workflow INFO:
[Node] Finished "_truncate_images0", elapsed time 7.625552s.
241015-23:36:42,151 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fov_check".
241015-23:36:42,155 nipype.workflow INFO:
[Node] Executing "fov_check" <nipype.interfaces.utility.wrappers.Function>
241015-23:36:42,931 nipype.workflow INFO:
[Node] Finished "fov_check", elapsed time 0.774629s.
241015-23:36:43,726 nipype.workflow INFO:
[Job 76] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images).
241015-23:36:43,729 nipype.workflow INFO:
[Job 78] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check).
241015-23:36:43,732 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241015-23:36:44,125 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/autorecon1".
241015-23:36:44,127 nipype.workflow INFO:
[Node] Setting-up "_inu_n40" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40".
241015-23:36:44,130 nipype.workflow INFO:
[Node] Executing "_inu_n40" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
241015-23:36:44,134 nipype.workflow INFO:
[Node] Executing "autorecon1" <smriprep.interfaces.freesurfer.ReconAll>
241015-23:36:45,728 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4
241015-23:39:27,547 nipype.workflow INFO:
[Node] Finished "_inu_n40", elapsed time 163.416234s.
241015-23:39:27,758 nipype.workflow INFO:
[Job 81] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4).
241015-23:39:27,763 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:39:28,134 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_target".
241015-23:39:28,138 nipype.workflow INFO:
[Node] Executing "res_target" <niworkflows.interfaces.nibabel.RegridToZooms>
241015-23:39:29,761 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:39:30,253 nipype.workflow INFO:
[Node] Finished "res_target", elapsed time 2.113633s.
241015-23:39:31,760 nipype.workflow INFO:
[Job 85] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target).
241015-23:39:31,765 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:39:32,229 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_target".
241015-23:39:32,233 nipype.workflow INFO:
[Node] Executing "lap_target" <nipype.interfaces.ants.utils.ImageMath>
241015-23:39:33,764 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:39:46,201 nipype.workflow INFO:
[Node] Finished "lap_target", elapsed time 13.966291s.
241015-23:39:47,763 nipype.workflow INFO:
[Job 86] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target).
241015-23:39:47,767 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:39:48,144 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/init_aff".
241015-23:39:48,151 nipype.workflow INFO:
[Node] Executing "init_aff" <nipype.interfaces.ants.utils.AI>
241015-23:39:49,765 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:41:47,333 nipype.workflow INFO:
[Node] Finished "init_aff", elapsed time 119.179862s.
241015-23:41:47,789 nipype.workflow INFO:
[Job 92] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff).
241015-23:41:47,794 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:41:48,213 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_target".
241015-23:41:48,218 nipype.workflow INFO:
[Node] Executing "mrg_target" <nipype.interfaces.utility.base.Merge>
241015-23:41:48,219 nipype.workflow INFO:
[Node] Finished "mrg_target", elapsed time 0.000448s.
241015-23:41:49,789 nipype.workflow INFO:
[Job 93] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target).
241015-23:41:49,794 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:41:50,255 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/norm".
241015-23:41:50,270 nipype.workflow INFO:
[Node] Executing "norm" <niworkflows.interfaces.fixes.FixHeaderRegistration>
241015-23:41:51,792 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 2.00/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
241015-23:48:41,832 nipype.workflow INFO:
[Node] Finished "autorecon1", elapsed time 717.696003s.
241015-23:48:41,898 nipype.workflow INFO:
[Job 82] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1).
241015-23:48:41,906 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:48:42,626 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fsnative2t1w_xfm".
241015-23:48:42,633 nipype.workflow INFO:
[Node] Executing "fsnative2t1w_xfm" <niworkflows.interfaces.freesurfer.PatchedRobustRegister>
241015-23:48:43,900 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:49:37,478 nipype.workflow INFO:
[Node] Finished "fsnative2t1w_xfm", elapsed time 54.843542s.
241015-23:49:37,910 nipype.workflow INFO:
[Job 87] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm).
241015-23:49:37,915 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:49:38,444 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/lta2itk".
241015-23:49:38,451 nipype.workflow INFO:
[Node] Executing "lta2itk" <niworkflows.interfaces.nitransforms.ConcatenateXFMs>
241015-23:49:38,459 nipype.workflow INFO:
[Node] Finished "lta2itk", elapsed time 0.006945s.
241015-23:49:38,461 nipype.workflow INFO:
[Job 94] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk).
241015-23:49:38,952 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask".
241015-23:49:38,960 nipype.workflow INFO:
[Node] Executing "first_mask" <niworkflows.interfaces.nibabel.ApplyMask>
241015-23:49:39,28 nipype.workflow INFO:
[Node] Finished "first_mask", elapsed time 0.066296s.
241015-23:49:39,911 nipype.workflow INFO:
[Job 106] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).
241015-23:49:39,915 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:49:40,413 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_anat_fsnative".
241015-23:49:40,421 nipype.workflow INFO:
[Node] Executing "ds_anat_fsnative" <smriprep.interfaces.DerivativesDataSink>
241015-23:49:40,436 nipype.workflow INFO:
[Node] Finished "ds_anat_fsnative", elapsed time 0.012639s.
241015-23:49:40,439 nipype.workflow INFO:
[Job 104] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative).
241015-23:49:40,900 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_fsnative_anat".
241015-23:49:40,908 nipype.workflow INFO:
[Node] Executing "ds_fsnative_anat" <smriprep.interfaces.DerivativesDataSink>
241015-23:49:40,920 nipype.workflow INFO:
[Node] Finished "ds_fsnative_anat", elapsed time 0.009851s.
241015-23:49:40,923 nipype.workflow INFO:
[Job 105] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat).
241015-23:49:41,398 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask".
241015-23:49:41,404 nipype.workflow INFO:
[Node] Executing "first_mask" <niworkflows.interfaces.nibabel.ApplyMask>
241015-23:49:41,461 nipype.workflow INFO:
[Node] Finished "first_mask", elapsed time 0.055631s.
241015-23:49:41,911 nipype.workflow INFO:
[Job 107] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).
241015-23:49:41,915 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:49:42,375 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize".
241015-23:49:42,380 nipype.workflow INFO:
[Node] Executing "unifize" <nipype.interfaces.afni.utils.Unifize>
241015-23:49:43,913 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:51:40,118 nipype.workflow INFO:
[Node] Finished "unifize", elapsed time 117.737009s.
241015-23:51:41,937 nipype.workflow INFO:
[Job 110] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).
241015-23:51:41,943 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:51:42,403 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize".
241015-23:51:42,408 nipype.workflow INFO:
[Node] Executing "unifize" <nipype.interfaces.afni.utils.Unifize>
241015-23:51:43,940 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:14,342 nipype.workflow INFO:
[Node] Finished "unifize", elapsed time 91.932257s.
241015-23:53:15,956 nipype.workflow INFO:
[Job 111] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).
241015-23:53:15,962 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:16,379 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
241015-23:53:16,385 nipype.workflow INFO:
[Node] Executing "fixhdr_unifize" <niworkflows.interfaces.header.CopyXForm>
241015-23:53:16,441 nipype.workflow INFO:
[Node] Finished "fixhdr_unifize", elapsed time 0.054894s.
241015-23:53:17,956 nipype.workflow INFO:
[Job 114] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
241015-23:53:17,961 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:18,335 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
241015-23:53:18,340 nipype.workflow INFO:
[Node] Executing "fixhdr_unifize" <niworkflows.interfaces.header.CopyXForm>
241015-23:53:18,388 nipype.workflow INFO:
[Node] Finished "fixhdr_unifize", elapsed time 0.046504s.
241015-23:53:19,956 nipype.workflow INFO:
[Job 115] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
241015-23:53:19,963 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:20,331 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
241015-23:53:20,336 nipype.workflow INFO:
[Node] Executing "skullstrip_second_pass" <nipype.interfaces.afni.preprocess.Automask>
241015-23:53:21,363 nipype.workflow INFO:
[Node] Finished "skullstrip_second_pass", elapsed time 1.025038s.
241015-23:53:21,957 nipype.workflow INFO:
[Job 119] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
241015-23:53:21,961 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:22,338 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
241015-23:53:22,344 nipype.workflow INFO:
[Node] Executing "skullstrip_second_pass" <nipype.interfaces.afni.preprocess.Automask>
241015-23:53:22,732 nipype.workflow INFO:
[Node] Finished "skullstrip_second_pass", elapsed time 0.386742s.
241015-23:53:23,957 nipype.workflow INFO:
[Job 120] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
241015-23:53:23,965 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:24,287 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
241015-23:53:24,293 nipype.workflow INFO:
[Node] Executing "fixhdr_skullstrip2" <niworkflows.interfaces.header.CopyXForm>
241015-23:53:24,317 nipype.workflow INFO:
[Node] Finished "fixhdr_skullstrip2", elapsed time 0.023341s.
241015-23:53:25,957 nipype.workflow INFO:
[Job 122] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
241015-23:53:25,962 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:26,444 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
241015-23:53:26,449 nipype.workflow INFO:
[Node] Executing "fixhdr_skullstrip2" <niworkflows.interfaces.header.CopyXForm>
241015-23:53:26,472 nipype.workflow INFO:
[Node] Finished "fixhdr_skullstrip2", elapsed time 0.021532s.
241015-23:53:27,958 nipype.workflow INFO:
[Job 123] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
241015-23:53:27,962 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:28,335 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks".
241015-23:53:28,341 nipype.workflow INFO:
[Node] Executing "combine_masks" <nipype.interfaces.fsl.maths.BinaryMaths>
241015-23:53:28,738 nipype.workflow INFO:
[Node] Finished "combine_masks", elapsed time 0.395673s.
241015-23:53:29,959 nipype.workflow INFO:
[Job 125] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).
241015-23:53:29,963 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:30,347 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks".
241015-23:53:30,354 nipype.workflow INFO:
[Node] Executing "combine_masks" <nipype.interfaces.fsl.maths.BinaryMaths>
241015-23:53:30,673 nipype.workflow INFO:
[Node] Finished "combine_masks", elapsed time 0.317749s.
241015-23:53:31,959 nipype.workflow INFO:
[Job 126] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).
241015-23:53:31,962 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:32,339 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask".
241015-23:53:32,344 nipype.workflow INFO:
[Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
241015-23:53:32,398 nipype.workflow INFO:
[Node] Finished "apply_mask", elapsed time 0.052575s.
241015-23:53:33,959 nipype.workflow INFO:
[Job 129] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).
241015-23:53:33,964 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:34,313 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask".
241015-23:53:34,321 nipype.workflow INFO:
[Node] Executing "ds_boldmask" <fmriprep.interfaces.DerivativesDataSink>
241015-23:53:34,351 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-brain_mask.nii.gz dtype from float32 to uint8
241015-23:53:34,417 nipype.workflow INFO:
[Node] Finished "ds_boldmask", elapsed time 0.094115s.
241015-23:53:34,420 nipype.workflow INFO:
[Job 130] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).
241015-23:53:34,759 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask".
241015-23:53:34,764 nipype.workflow INFO:
[Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
241015-23:53:34,812 nipype.workflow INFO:
[Node] Finished "apply_mask", elapsed time 0.047292s.
241015-23:53:35,959 nipype.workflow INFO:
[Job 131] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).
241015-23:53:35,964 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:36,323 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask".
241015-23:53:36,330 nipype.workflow INFO:
[Node] Executing "ds_boldmask" <fmriprep.interfaces.DerivativesDataSink>
241015-23:53:36,352 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-brain_mask.nii.gz dtype from float32 to uint8
241015-23:53:36,396 nipype.workflow INFO:
[Node] Finished "ds_boldmask", elapsed time 0.064103s.
241015-23:53:36,399 nipype.workflow INFO:
[Job 132] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).
241015-23:53:36,769 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/dvars".
241015-23:53:36,943 nipype.workflow INFO:
[Node] Executing "dvars" <nipype.algorithms.confounds.ComputeDVARS>
241015-23:53:37,962 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:47,291 nipype.workflow INFO:
[Node] Finished "dvars", elapsed time 10.346177s.
241015-23:53:47,962 nipype.workflow INFO:
[Job 135] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars).
241015-23:53:47,967 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:48,330 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcompcor".
241015-23:53:48,338 nipype.workflow INFO:
[Node] Executing "tcompcor" <niworkflows.interfaces.patches.RobustTCompCor>
241015-23:53:49,965 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:50,345 nipype.workflow INFO:
[Node] Finished "tcompcor", elapsed time 2.006826s.
241015-23:53:51,963 nipype.workflow INFO:
[Job 136] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor).
241015-23:53:51,970 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:53:52,330 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/dvars".
241015-23:53:52,337 nipype.workflow INFO:
[Node] Executing "dvars" <nipype.algorithms.confounds.ComputeDVARS>
241015-23:53:53,966 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:04,312 nipype.workflow INFO:
[Node] Finished "dvars", elapsed time 11.973813s.
241015-23:54:05,966 nipype.workflow INFO:
[Job 137] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars).
241015-23:54:05,971 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:06,358 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcompcor".
241015-23:54:06,367 nipype.workflow INFO:
[Node] Executing "tcompcor" <niworkflows.interfaces.patches.RobustTCompCor>
241015-23:54:07,969 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:08,568 nipype.workflow INFO:
[Node] Finished "tcompcor", elapsed time 2.200094s.
241015-23:54:09,967 nipype.workflow INFO:
[Job 138] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor).
241015-23:54:09,972 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:10,321 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_dvars_header".
241015-23:54:10,325 nipype.workflow INFO:
[Node] Executing "add_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:54:10,328 nipype.workflow INFO:
[Node] Finished "add_dvars_header", elapsed time 0.001837s.
241015-23:54:10,330 nipype.workflow INFO:
[Job 144] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header).
241015-23:54:10,659 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_std_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_std_dvars_header".
241015-23:54:10,663 nipype.workflow INFO:
[Node] Executing "add_std_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:54:10,666 nipype.workflow INFO:
[Node] Finished "add_std_dvars_header", elapsed time 0.001776s.
241015-23:54:10,669 nipype.workflow INFO:
[Job 145] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_std_dvars_header).
241015-23:54:11,315 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_filter" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcc_metadata_filter".
241015-23:54:11,319 nipype.workflow INFO:
[Node] Executing "tcc_metadata_filter" <fmriprep.interfaces.confounds.FilterDropped>
241015-23:54:11,342 nipype.workflow INFO:
[Node] Finished "tcc_metadata_filter", elapsed time 0.022247s.
241015-23:54:11,968 nipype.workflow INFO:
[Job 146] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_filter).
241015-23:54:11,973 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:12,259 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_dvars_header".
241015-23:54:12,263 nipype.workflow INFO:
[Node] Executing "add_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:54:12,265 nipype.workflow INFO:
[Node] Finished "add_dvars_header", elapsed time 0.001593s.
241015-23:54:12,267 nipype.workflow INFO:
[Job 147] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_dvars_header).
241015-23:54:12,549 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_std_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_std_dvars_header".
241015-23:54:12,553 nipype.workflow INFO:
[Node] Executing "add_std_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
241015-23:54:12,555 nipype.workflow INFO:
[Node] Finished "add_std_dvars_header", elapsed time 0.001757s.
241015-23:54:12,557 nipype.workflow INFO:
[Job 148] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_std_dvars_header).
241015-23:54:12,837 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_filter" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcc_metadata_filter".
241015-23:54:12,841 nipype.workflow INFO:
[Node] Executing "tcc_metadata_filter" <fmriprep.interfaces.confounds.FilterDropped>
241015-23:54:12,850 nipype.workflow INFO:
[Node] Finished "tcc_metadata_filter", elapsed time 0.006373s.
241015-23:54:13,968 nipype.workflow INFO:
[Job 149] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_filter).
241015-23:54:13,972 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:14,274 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_fmt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcc_metadata_fmt".
241015-23:54:14,280 nipype.workflow INFO:
[Node] Executing "tcc_metadata_fmt" <niworkflows.interfaces.utility.TSV2JSON>
241015-23:54:14,292 nipype.workflow INFO:
[Node] Finished "tcc_metadata_fmt", elapsed time 0.008016s.
241015-23:54:15,968 nipype.workflow INFO:
[Job 153] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_fmt).
241015-23:54:15,972 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241015-23:54:16,246 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_fmt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcc_metadata_fmt".
241015-23:54:16,254 nipype.workflow INFO:
[Node] Executing "tcc_metadata_fmt" <niworkflows.interfaces.utility.TSV2JSON>
241015-23:54:16,264 nipype.workflow INFO:
[Node] Finished "tcc_metadata_fmt", elapsed time 0.005553s.
241015-23:54:17,969 nipype.workflow INFO:
[Job 154] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_fmt).
241015-23:54:17,973 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
241016-00:30:58,540 nipype.workflow INFO:
[Node] Finished "norm", elapsed time 2948.267125s.
241016-00:30:58,798 nipype.workflow INFO:
[Job 103] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm).
241016-00:30:58,803 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241016-00:30:59,228 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_wmmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/map_wmmask".
241016-00:30:59,233 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/map_brainmask".
241016-00:30:59,240 nipype.workflow INFO:
[Node] Executing "map_wmmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
241016-00:30:59,252 nipype.workflow INFO:
[Node] Executing "map_brainmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
241016-00:31:00,800 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 8.00/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_wmmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask
241016-00:31:24,39 nipype.workflow INFO:
[Node] Finished "map_wmmask", elapsed time 24.797449s.
241016-00:31:24,804 nipype.workflow INFO:
[Job 109] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_wmmask).
241016-00:31:24,808 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask
241016-00:31:25,162 nipype.workflow INFO:
[Node] Setting-up "_inu_n4_final0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0".
241016-00:31:25,165 nipype.workflow INFO:
[Node] Executing "_inu_n4_final0" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
241016-00:31:26,806 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 8.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask
241016-00:31:31,663 nipype.workflow INFO:
[Node] Finished "map_brainmask", elapsed time 32.409782s.
241016-00:31:32,805 nipype.workflow INFO:
[Job 108] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask).
241016-00:31:32,810 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:33,123 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.thr_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/thr_brainmask".
241016-00:31:33,128 nipype.workflow INFO:
[Node] Executing "thr_brainmask" <nipype.interfaces.ants.utils.ThresholdImage>
241016-00:31:34,807 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.thr_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:35,187 nipype.workflow INFO:
[Node] Finished "thr_brainmask", elapsed time 2.057355s.
241016-00:31:36,806 nipype.workflow INFO:
[Job 112] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.thr_brainmask).
241016-00:31:36,810 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:37,98 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.dil_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/dil_brainmask".
241016-00:31:37,102 nipype.workflow INFO:
[Node] Executing "dil_brainmask" <nipype.interfaces.ants.utils.ImageMath>
241016-00:31:38,809 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.dil_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:39,617 nipype.workflow INFO:
[Node] Finished "dil_brainmask", elapsed time 2.513654s.
241016-00:31:40,806 nipype.workflow INFO:
[Job 116] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.dil_brainmask).
241016-00:31:40,811 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:41,107 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/03_pad_mask".
241016-00:31:41,111 nipype.workflow INFO:
[Node] Executing "03_pad_mask" <nipype.interfaces.ants.utils.ImageMath>
241016-00:31:42,809 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.03_pad_mask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:42,956 nipype.workflow INFO:
[Node] Finished "03_pad_mask", elapsed time 1.842985s.
241016-00:31:44,806 nipype.workflow INFO:
[Job 117] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.03_pad_mask).
241016-00:31:44,810 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:45,91 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.get_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/get_brainmask".
241016-00:31:45,96 nipype.workflow INFO:
[Node] Executing "get_brainmask" <nipype.interfaces.ants.utils.ImageMath>
241016-00:31:46,810 nipype.workflow INFO:
[MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.get_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:31:47,668 nipype.workflow INFO:
[Node] Finished "get_brainmask", elapsed time 2.570554s.
241016-00:31:48,808 nipype.workflow INFO:
[Job 121] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.get_brainmask).
241016-00:31:48,812 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
241016-00:32:14,409 nipype.workflow INFO:
[Node] Finished "_inu_n4_final0", elapsed time 49.242739s.
241016-00:32:14,813 nipype.workflow INFO:
[Job 113] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final).
241016-00:32:14,820 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
241016-00:32:15,106 nipype.workflow INFO:
[Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/01_atropos".
241016-00:32:15,111 nipype.workflow INFO:
[Node] Setting-up "_apply_mask0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0".
241016-00:32:15,113 nipype.workflow INFO:
[Node] Executing "01_atropos" <nipype.interfaces.ants.segmentation.Atropos>
241016-00:32:15,118 nipype.workflow INFO:
[Node] Executing "_apply_mask0" <niworkflows.interfaces.nibabel.ApplyMask>
241016-00:32:16,580 nipype.workflow INFO:
[Node] Finished "_apply_mask0", elapsed time 1.460045s.
241016-00:32:16,814 nipype.workflow INFO:
[Job 118] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.apply_mask).
241016-00:32:16,818 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.01_atropos
2024-10-15 23:24:28,970 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies
2024-10-15 23:24:33,274 [ INFO] Telemetry system to collect crashes and errors is enabled - thanks for your feedback!. Use option ``--notrack`` to opt out.
2024-10-15 23:24:34,028 [ WARNING] WARNING: `sentry_sdk.Hub` is deprecated and will be removed in a future major release. Please consult our 1.x to 2.x migration guide for details on how to migrate `Hub` usage to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x
2024-10-15 23:24:36,548 [ WARNING] WARNING: sentry_sdk.configure_scope is deprecated and will be removed in the next major version. Please consult our migration guide to learn how to migrate to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x#scope-configuring
2024-10-15 23:25:11,162 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies
2024-10-15 23:25:13,130 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library "nireports".
2024-10-15 23:25:13,431 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library "nireports".
2024-10-15 23:25:18,323 [IMPORTANT] Running fMRIPrep version 24.1.0
License NOTICE ##################################################
fMRIPrep 24.1.0
Copyright The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software is also distributed as a Docker container image.
The bootstrapping file for the image ("Dockerfile") is licensed
under the MIT License.
This software may be distributed through an add-on package called
"Docker Wrapper" that is under the BSD 3-clause License.
#################################################################
2024-10-15 23:25:18,365 [IMPORTANT] Building fMRIPrep's workflow:
* BIDS dataset path: /home/jovyan/example-notebooks/books/functional_imaging/ds000102.
* Participant list: ['08'].
* Run identifier: 20241015-232429_15780f30-1c17-4b2e-8c7c-502ef33980db.
* Output spaces: T1w MNI152NLin2009cAsym:res-native fsaverage:den-164k fsnative.
* Pre-run FreeSurfer's SUBJECTS_DIR: /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-freesurfer-dir.
2024-10-15 23:25:20,373 [ INFO] ANAT Stage 1: Adding template workflow
2024-10-15 23:25:22,541 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:25:22,542 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:25:23,018 [ INFO] ANAT Stage 2: Preparing brain extraction workflow
2024-10-15 23:25:23,262 [ INFO] ANAT Stage 3: Preparing segmentation workflow
2024-10-15 23:25:23,279 [ INFO] ANAT Stage 4: Preparing normalization workflow for ['MNI152NLin2009cAsym']
2024-10-15 23:25:23,308 [ INFO] ANAT Stage 5: Preparing surface reconstruction workflow
2024-10-15 23:25:23,362 [ INFO] ANAT Stage 6: Preparing mask refinement workflow
2024-10-15 23:25:23,367 [ INFO] ANAT No T2w images provided - skipping Stage 7
2024-10-15 23:25:23,367 [ INFO] ANAT Stage 8: Creating GIFTI surfaces for ['white', 'pial', 'midthickness', 'sphere_reg', 'sphere']
2024-10-15 23:25:23,408 [ INFO] ANAT Stage 8: Creating GIFTI metrics for ['thickness', 'sulc']
2024-10-15 23:25:23,425 [ INFO] ANAT Stage 8a: Creating cortical ribbon mask
2024-10-15 23:25:23,434 [ INFO] ANAT Stage 9: Creating fsLR registration sphere
2024-10-15 23:25:23,450 [ INFO] ANAT Stage 10: Creating MSM-Sulc registration sphere
2024-10-15 23:25:23,947 [ INFO] No single-band-reference found for sub-08_task-flanker_run-1_bold.nii.gz.
2024-10-15 23:25:24,223 [ INFO] Stage 1: Adding HMC boldref workflow
2024-10-15 23:25:24,250 [ INFO] Stage 2: Adding motion correction workflow
2024-10-15 23:25:24,288 [ INFO] Stage 3: Adding coregistration boldref workflow
2024-10-15 23:25:24,290 [ WARNING] WARNING: niworkflows.interfaces.nibabel.BinaryDilation is deprecated in favor of
niworkflows.interfaces.morphology.BinaryDilation. Please validate that
interface for your use case and switch.
2024-10-15 23:25:24,753 [ INFO] No single-band-reference found for sub-08_task-flanker_run-2_bold.nii.gz.
2024-10-15 23:25:24,858 [ INFO] Stage 1: Adding HMC boldref workflow
2024-10-15 23:25:24,871 [ INFO] Stage 2: Adding motion correction workflow
2024-10-15 23:25:24,882 [ INFO] Stage 3: Adding coregistration boldref workflow
2024-10-15 23:25:24,884 [ WARNING] WARNING: niworkflows.interfaces.nibabel.BinaryDilation is deprecated in favor of
niworkflows.interfaces.morphology.BinaryDilation. Please validate that
interface for your use case and switch.
2024-10-15 23:25:31,379 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies
2024-10-15 23:25:31,720 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library "nireports".
2024-10-15 23:25:31,888 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library "nireports".
2024-10-15 23:25:33,142 [ INFO] fMRIPrep workflow graph with 580 nodes built successfully.
2024-10-15 23:25:39,386 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library "nireports".
2024-10-15 23:25:39,580 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library "nireports".
2024-10-15 23:25:59,298 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies
2024-10-15 23:25:59,614 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library "nireports".
2024-10-15 23:25:59,770 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library "nireports".
2024-10-15 23:26:05,628 [ WARNING] WARNING: sentry_sdk.configure_scope is deprecated and will be removed in the next major version. Please consult our migration guide to learn how to migrate to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x#scope-configuring
2024-10-15 23:26:06,865 [IMPORTANT] fMRIPrep started!
2024-10-15 23:26:09,448 [ INFO] Workflow fmriprep_24_1_wf settings: ['check', 'execution', 'logging', 'monitoring']
2024-10-15 23:26:10,000 [ INFO] Running in parallel.
2024-10-15 23:26:10,004 [ WARNING] Some nodes exceed the total amount of memory available (10.00GB).
2024-10-15 23:26:10,019 [ INFO] [MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:26:10,374 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db".
2024-10-15 23:26:10,377 [ INFO] [Node] Executing "fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db" <niworkflows.interfaces.bids.BIDSFreeSurferDir>
2024-10-15 23:26:13,148 [ INFO] [Node] Finished "fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db", elapsed time 2.762988s.
2024-10-15 23:26:13,152 [ INFO] [Job 0] Completed (fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db).
2024-10-15 23:26:13,471 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.about" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/about".
2024-10-15 23:26:13,477 [ INFO] [Node] Executing "about" <fmriprep.interfaces.reports.AboutSummary>
2024-10-15 23:26:13,478 [ INFO] [Node] Finished "about", elapsed time 0.000432s.
2024-10-15 23:26:13,481 [ INFO] [Job 2] Completed (fmriprep_24_1_wf.sub_08_wf.about).
2024-10-15 23:26:13,838 [ INFO] [MultiProc] Running 2 tasks, and 17 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl
* fmriprep_24_1_wf.sub_08_wf.bidssrc
2024-10-15 23:26:20,232 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_tmpl".
2024-10-15 23:26:20,237 [ INFO] [Node] Executing "res_tmpl" <niworkflows.interfaces.nibabel.RegridToZooms>
2024-10-15 23:26:21,277 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bidssrc" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bidssrc".
2024-10-15 23:26:21,279 [ INFO] [Node] Executing "bidssrc" <niworkflows.interfaces.bids.BIDSDataGrabber>
2024-10-15 23:26:21,287 [ INFO] No "t2w" images found for sub-08
2024-10-15 23:26:21,287 [ INFO] No "flair" images found for sub-08
2024-10-15 23:26:21,287 [ INFO] No "fmap" images found for sub-08
2024-10-15 23:26:21,287 [ INFO] No "sbref" images found for sub-08
2024-10-15 23:26:21,287 [ INFO] No "roi" images found for sub-08
2024-10-15 23:26:21,287 [ INFO] No "pet" images found for sub-08
2024-10-15 23:26:21,287 [ INFO] No "asl" images found for sub-08
2024-10-15 23:26:21,288 [ INFO] [Node] Finished "bidssrc", elapsed time 0.000749s.
2024-10-15 23:26:21,839 [ INFO] [Job 1] Completed (fmriprep_24_1_wf.sub_08_wf.bidssrc).
2024-10-15 23:26:21,844 [ INFO] [MultiProc] Running 1 tasks, and 20 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl
2024-10-15 23:26:22,134 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/full_wm".
2024-10-15 23:26:22,138 [ INFO] [Node] Executing "full_wm" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:26:23,049 [ INFO] [Node] Finished "res_tmpl", elapsed time 2.804299s.
2024-10-15 23:26:23,236 [ INFO] [Node] Finished "full_wm", elapsed time 1.097074s.
2024-10-15 23:26:23,839 [ INFO] [Job 3] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl).
2024-10-15 23:26:23,842 [ INFO] [Job 4] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm).
2024-10-15 23:26:23,845 [ INFO] [MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:26:24,185 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/val_bold".
2024-10-15 23:26:24,188 [ INFO] [Node] Executing "val_bold" <niworkflows.interfaces.header.ValidateImage>
2024-10-15 23:26:24,277 [ INFO] [Node] Finished "val_bold", elapsed time 0.08823s.
2024-10-15 23:26:24,329 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_tmpl".
2024-10-15 23:26:24,331 [ INFO] [Node] Executing "lap_tmpl" <nipype.interfaces.ants.utils.ImageMath>
2024-10-15 23:26:24,583 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:24,584 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:25,841 [ INFO] [Job 6] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold).
2024-10-15 23:26:25,845 [ INFO] [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
2024-10-15 23:26:26,174 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/get_dummy".
2024-10-15 23:26:26,177 [ INFO] [Node] Executing "get_dummy" <niworkflows.interfaces.bold.NonsteadyStatesDetector>
2024-10-15 23:26:27,283 [ INFO] [Node] Finished "get_dummy", elapsed time 1.104616s.
2024-10-15 23:26:27,841 [ INFO] [Job 7] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).
2024-10-15 23:26:27,845 [ INFO] [MultiProc] Running 1 tasks, and 19 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
2024-10-15 23:26:28,139 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/sources".
2024-10-15 23:26:28,142 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:26:28,143 [ INFO] [Node] Finished "sources", elapsed time 0.000407s.
2024-10-15 23:26:29,841 [ INFO] [Job 8] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).
2024-10-15 23:26:29,846 [ INFO] [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
2024-10-15 23:26:30,213 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/sources".
2024-10-15 23:26:30,218 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:26:30,220 [ INFO] [Node] Finished "sources", elapsed time 0.000599s.
2024-10-15 23:26:31,842 [ INFO] [Job 9] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources).
2024-10-15 23:26:31,847 [ INFO] [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
2024-10-15 23:26:32,191 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/sources".
2024-10-15 23:26:32,196 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:26:32,198 [ INFO] [Node] Finished "sources", elapsed time 0.000971s.
2024-10-15 23:26:33,841 [ INFO] [Job 10] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources).
2024-10-15 23:26:33,845 [ INFO] [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
2024-10-15 23:26:34,169 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/bold_source".
2024-10-15 23:26:34,172 [ INFO] [Node] Executing "bold_source" <nipype.interfaces.utility.base.Select>
2024-10-15 23:26:34,173 [ INFO] [Node] Finished "bold_source", elapsed time 0.000436s.
2024-10-15 23:26:34,751 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:34,752 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:35,843 [ INFO] [Job 11] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source).
2024-10-15 23:26:35,847 [ INFO] [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl
2024-10-15 23:26:36,217 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/val_bold".
2024-10-15 23:26:36,220 [ INFO] [Node] Executing "val_bold" <niworkflows.interfaces.header.ValidateImage>
2024-10-15 23:26:36,310 [ INFO] [Node] Finished "val_bold", elapsed time 0.089257s.
2024-10-15 23:26:37,529 [ INFO] [Node] Finished "lap_tmpl", elapsed time 12.835325s.
2024-10-15 23:26:37,843 [ INFO] [Job 5] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl).
2024-10-15 23:26:37,846 [ INFO] [Job 12] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold).
2024-10-15 23:26:37,849 [ INFO] [MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:26:38,215 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/get_dummy".
2024-10-15 23:26:38,219 [ INFO] [Node] Executing "get_dummy" <niworkflows.interfaces.bold.NonsteadyStatesDetector>
2024-10-15 23:26:39,235 [ INFO] [Node] Finished "get_dummy", elapsed time 1.014578s.
2024-10-15 23:26:39,843 [ INFO] [Job 13] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).
2024-10-15 23:26:39,847 [ INFO] [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources
2024-10-15 23:26:40,164 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/sources".
2024-10-15 23:26:40,169 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:26:40,171 [ INFO] [Node] Finished "sources", elapsed time 0.000361s.
2024-10-15 23:26:40,692 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/sources".
2024-10-15 23:26:40,695 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:26:40,697 [ INFO] [Node] Finished "sources", elapsed time 0.000394s.
2024-10-15 23:26:41,844 [ INFO] [Job 14] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).
2024-10-15 23:26:41,846 [ INFO] [Job 15] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources).
2024-10-15 23:26:41,849 [ INFO] [MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:26:42,217 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/sources".
2024-10-15 23:26:42,218 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/bold_source".
2024-10-15 23:26:42,221 [ INFO] [Node] Executing "bold_source" <nipype.interfaces.utility.base.Select>
2024-10-15 23:26:42,223 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:26:42,223 [ INFO] [Node] Finished "bold_source", elapsed time 0.000915s.
2024-10-15 23:26:42,225 [ INFO] [Node] Finished "sources", elapsed time 0.000537s.
2024-10-15 23:26:43,844 [ INFO] [Job 16] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources).
2024-10-15 23:26:43,846 [ INFO] [Job 17] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source).
2024-10-15 23:26:43,850 [ INFO] [MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:26:44,199 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/split_desc".
2024-10-15 23:26:44,201 [ INFO] [Node] Executing "split_desc" <smriprep.interfaces.templateflow.TemplateDesc>
2024-10-15 23:26:44,203 [ INFO] [Node] Finished "split_desc", elapsed time 0.000223s.
2024-10-15 23:26:44,205 [ INFO] [Job 18] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc).
2024-10-15 23:26:44,501 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource".
2024-10-15 23:26:44,504 [ INFO] [Node] Executing "spacesource" <niworkflows.interfaces.space.SpaceDataSource>
2024-10-15 23:26:44,506 [ INFO] [Node] Finished "spacesource", elapsed time 0.000283s.
2024-10-15 23:26:44,508 [ INFO] [Job 19] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource).
2024-10-15 23:26:44,817 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource".
2024-10-15 23:26:44,820 [ INFO] [Node] Executing "spacesource" <niworkflows.interfaces.space.SpaceDataSource>
2024-10-15 23:26:44,821 [ INFO] [Node] Finished "spacesource", elapsed time 0.000234s.
2024-10-15 23:26:44,823 [ INFO] [Job 20] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource).
2024-10-15 23:26:45,132 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bids_info" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bids_info".
2024-10-15 23:26:45,137 [ INFO] [Node] Executing "bids_info" <niworkflows.interfaces.bids.BIDSInfo>
2024-10-15 23:26:45,142 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_ref_dimensions".
2024-10-15 23:26:45,148 [ INFO] [Node] Executing "anat_ref_dimensions" <niworkflows.interfaces.images.TemplateDimensions>
2024-10-15 23:26:45,152 [ INFO] [Node] Finished "bids_info", elapsed time 0.013513s.
2024-10-15 23:26:45,667 [ INFO] [Node] Finished "anat_ref_dimensions", elapsed time 0.517631s.
2024-10-15 23:26:45,844 [ INFO] [Job 21] Completed (fmriprep_24_1_wf.sub_08_wf.bids_info).
2024-10-15 23:26:45,847 [ INFO] [Job 22] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions).
2024-10-15 23:26:45,851 [ INFO] [MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:26:46,226 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.ds_report_about" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_about".
2024-10-15 23:26:46,234 [ INFO] [Node] Executing "ds_report_about" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:26:46,253 [ INFO] [Node] Finished "ds_report_about", elapsed time 0.018033s.
2024-10-15 23:26:46,256 [ INFO] [Job 23] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_about).
2024-10-15 23:26:46,558 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation".
2024-10-15 23:26:46,561 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_tmpl".
2024-10-15 23:26:46,566 [ INFO] [Node] Executing "ds_report_validation" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:26:46,566 [ INFO] [Node] Executing "mrg_tmpl" <nipype.interfaces.utility.base.Merge>
2024-10-15 23:26:46,567 [ INFO] [Node] Finished "mrg_tmpl", elapsed time 0.000395s.
2024-10-15 23:26:46,580 [ INFO] [Node] Finished "ds_report_validation", elapsed time 0.012721s.
2024-10-15 23:26:46,582 [ INFO] [Job 25] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).
2024-10-15 23:26:46,909 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg".
2024-10-15 23:26:46,918 [ INFO] [Node] Executing "gen_avg" <niworkflows.interfaces.images.RobustAverage>
2024-10-15 23:26:47,844 [ INFO] [Job 24] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl).
2024-10-15 23:26:47,849 [ INFO] [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
2024-10-15 23:26:48,231 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans".
2024-10-15 23:26:48,235 [ INFO] [Node] Executing "calc_dummy_scans" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:26:48,237 [ INFO] [Node] Finished "calc_dummy_scans", elapsed time 0.000635s.
2024-10-15 23:26:48,239 [ INFO] [Job 27] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).
2024-10-15 23:26:48,543 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/validate_bold".
2024-10-15 23:26:48,544 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:48,545 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:48,546 [ INFO] [Node] Executing "validate_bold" <niworkflows.interfaces.header.ValidateImage>
2024-10-15 23:26:48,570 [ INFO] stderr 2024-10-15T23:26:48.570804:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]
2024-10-15 23:26:48,571 [ INFO] stderr 2024-10-15T23:26:48.570804:++ Authored by: RW Cox
2024-10-15 23:26:48,574 [ INFO] stderr 2024-10-15T23:26:48.574726:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-1_bold_sliced.nii.gz to FLOAT32
2024-10-15 23:26:48,574 [ INFO] stderr 2024-10-15T23:26:48.574726: Warnings of this type will be muted for this session.
2024-10-15 23:26:48,574 [ INFO] stderr 2024-10-15T23:26:48.574726: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
2024-10-15 23:26:48,580 [ INFO] stderr 2024-10-15T23:26:48.580785:++ Coarse del was 10, replaced with 4
2024-10-15 23:26:48,638 [ INFO] [Node] Finished "validate_bold", elapsed time 0.09087s.
2024-10-15 23:26:49,845 [ INFO] [Job 28] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold).
2024-10-15 23:26:49,854 [ INFO] [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
2024-10-15 23:26:50,236 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation".
2024-10-15 23:26:50,243 [ INFO] [Node] Executing "ds_report_validation" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:26:50,257 [ INFO] [Node] Finished "ds_report_validation", elapsed time 0.012762s.
2024-10-15 23:26:50,260 [ INFO] [Job 29] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).
2024-10-15 23:26:50,668 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg".
2024-10-15 23:26:50,679 [ INFO] [Node] Executing "gen_avg" <niworkflows.interfaces.images.RobustAverage>
2024-10-15 23:26:51,848 [ INFO] [MultiProc] Running 2 tasks, and 14 jobs ready. Free memory (GB): 8.00/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
2024-10-15 23:26:52,056 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:52,056 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:26:52,073 [ INFO] stderr 2024-10-15T23:26:52.073803:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]
2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.073803:++ Authored by: RW Cox
2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.074596:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-2_bold_sliced.nii.gz to FLOAT32
2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.074596: Warnings of this type will be muted for this session.
2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.074596: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
2024-10-15 23:26:52,075 [ INFO] stderr 2024-10-15T23:26:52.075093:++ Coarse del was 10, replaced with 4
2024-10-15 23:27:05,036 [ INFO] stderr 2024-10-15T23:27:05.035900:++ Max displacement in automask = 0.12 (mm) at sub-brick 18
2024-10-15 23:27:05,036 [ INFO] stderr 2024-10-15T23:27:05.035900:++ Max delta displ in automask = 0.10 (mm) at sub-brick 5
2024-10-15 23:27:07,021 [ INFO] [Node] Finished "gen_avg", elapsed time 20.101864s.
2024-10-15 23:27:07,849 [ INFO] [Job 26] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).
2024-10-15 23:27:07,853 [ INFO] [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
2024-10-15 23:27:08,205 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans".
2024-10-15 23:27:08,210 [ INFO] [Node] Executing "calc_dummy_scans" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:08,212 [ INFO] [Node] Finished "calc_dummy_scans", elapsed time 0.000776s.
2024-10-15 23:27:08,215 [ INFO] [Job 31] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).
2024-10-15 23:27:08,528 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/validate_bold".
2024-10-15 23:27:08,532 [ INFO] [Node] Executing "validate_bold" <niworkflows.interfaces.header.ValidateImage>
2024-10-15 23:27:08,621 [ INFO] [Node] Finished "validate_bold", elapsed time 0.087389s.
2024-10-15 23:27:09,850 [ INFO] [Job 32] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold).
2024-10-15 23:27:09,854 [ INFO] [MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
2024-10-15 23:27:10,255 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/tf_select".
2024-10-15 23:27:10,259 [ INFO] [Node] Executing "tf_select" <smriprep.interfaces.templateflow.TemplateFlowSelect>
2024-10-15 23:27:10,440 [ INFO] [Node] Finished "tf_select", elapsed time 0.179621s.
2024-10-15 23:27:10,442 [ INFO] [Job 33] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select).
2024-10-15 23:27:10,788 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/fmt_cohort".
2024-10-15 23:27:10,792 [ INFO] [Node] Executing "fmt_cohort" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:10,793 [ INFO] [Node] Finished "fmt_cohort", elapsed time 0.000689s.
2024-10-15 23:27:10,795 [ INFO] [Job 34] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort).
2024-10-15 23:27:11,115 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid".
2024-10-15 23:27:11,118 [ INFO] [Node] Executing "gen_tplid" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:11,120 [ INFO] [Node] Finished "gen_tplid", elapsed time 0.00067s.
2024-10-15 23:27:11,122 [ INFO] [Job 35] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid).
2024-10-15 23:27:11,433 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl".
2024-10-15 23:27:11,437 [ INFO] [Node] Executing "select_tpl" <smriprep.interfaces.templateflow.TemplateFlowSelect>
2024-10-15 23:27:11,618 [ INFO] [Node] Finished "select_tpl", elapsed time 0.179943s.
2024-10-15 23:27:11,620 [ INFO] [Job 36] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl).
2024-10-15 23:27:11,926 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid".
2024-10-15 23:27:11,929 [ INFO] [Node] Executing "gen_tplid" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:11,931 [ INFO] [Node] Finished "gen_tplid", elapsed time 0.000554s.
2024-10-15 23:27:11,933 [ INFO] [Job 37] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid).
2024-10-15 23:27:12,221 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl".
2024-10-15 23:27:12,224 [ INFO] [Node] Executing "select_tpl" <smriprep.interfaces.templateflow.TemplateFlowSelect>
2024-10-15 23:27:12,308 [ INFO] stderr 2024-10-15T23:27:12.307938:++ Max displacement in automask = 1.01 (mm) at sub-brick 17
2024-10-15 23:27:12,308 [ INFO] stderr 2024-10-15T23:27:12.307938:++ Max delta displ in automask = 0.39 (mm) at sub-brick 17
2024-10-15 23:27:12,369 [ INFO] [Node] Finished "select_tpl", elapsed time 0.144077s.
2024-10-15 23:27:12,371 [ INFO] [Job 38] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl).
2024-10-15 23:27:12,658 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/summary".
2024-10-15 23:27:12,664 [ INFO] [Node] Executing "summary" <fmriprep.interfaces.reports.SubjectSummary>
2024-10-15 23:27:12,668 [ INFO] [Node] Finished "summary", elapsed time 0.002818s.
2024-10-15 23:27:12,669 [ INFO] [Job 39] Completed (fmriprep_24_1_wf.sub_08_wf.summary).
2024-10-15 23:27:12,931 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/fs_isrunning".
2024-10-15 23:27:12,932 [ INFO] [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 8.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg
2024-10-15 23:27:12,937 [ INFO] [Node] Executing "fs_isrunning" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:12,940 [ INFO] [Node] Finished "fs_isrunning", elapsed time 0.001409s.
2024-10-15 23:27:14,000 [ INFO] [Node] Finished "gen_avg", elapsed time 23.320179s.
2024-10-15 23:27:14,933 [ INFO] [Job 30] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).
2024-10-15 23:27:14,935 [ INFO] [Job 40] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning).
2024-10-15 23:27:14,938 [ INFO] [MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:27:15,329 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_t1w_mask_wf/raw_sources".
2024-10-15 23:27:15,335 [ INFO] [Node] Executing "raw_sources" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:15,337 [ INFO] [Node] Finished "raw_sources", elapsed time 0.000895s.
2024-10-15 23:27:15,388 [ INFO] [Node] Setting-up "_denoise0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/denoise/mapflow/_denoise0".
2024-10-15 23:27:15,390 [ INFO] [Node] Executing "_denoise0" <nipype.interfaces.ants.segmentation.DenoiseImage>
2024-10-15 23:27:15,626 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:27:15,626 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:27:16,934 [ INFO] [Job 42] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources).
2024-10-15 23:27:16,939 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:27:17,252 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_ribbon_mask_wf/raw_sources".
2024-10-15 23:27:17,256 [ INFO] [Node] Executing "raw_sources" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:17,259 [ INFO] [Node] Finished "raw_sources", elapsed time 0.000847s.
2024-10-15 23:27:18,934 [ INFO] [Job 43] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources).
2024-10-15 23:27:18,938 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:27:19,250 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/t1w_conform_check".
2024-10-15 23:27:19,254 [ INFO] [Node] Executing "t1w_conform_check" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:19,255 [ INFO] [Node] Finished "t1w_conform_check", elapsed time 0.00059s.
2024-10-15 23:27:19,257 [ INFO] [Job 44] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check).
2024-10-15 23:27:19,536 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/fmapref_buffer".
2024-10-15 23:27:19,541 [ INFO] [Node] Executing "fmapref_buffer" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:19,546 [ INFO] [Node] Finished "fmapref_buffer", elapsed time 0.00407s.
2024-10-15 23:27:20,935 [ INFO] [Job 45] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer).
2024-10-15 23:27:20,939 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:27:22,075 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref".
2024-10-15 23:27:22,082 [ INFO] [Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:27:22,111 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-hmc_boldref.nii.gz dtype from int16 to float32
2024-10-15 23:27:22,242 [ INFO] [Node] Finished "ds_boldref", elapsed time 0.157856s.
2024-10-15 23:27:22,245 [ INFO] [Job 46] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).
2024-10-15 23:27:22,662 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/mcflirt".
2024-10-15 23:27:22,668 [ INFO] [Node] Executing "mcflirt" <nipype.interfaces.fsl.preprocess.MCFLIRT>
2024-10-15 23:27:22,937 [ INFO] [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:27:52,492 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:27:52,493 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:27:52,827 [ INFO] [Node] Finished "mcflirt", elapsed time 30.157369s.
2024-10-15 23:27:52,942 [ INFO] [Job 47] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt).
2024-10-15 23:27:52,946 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:27:53,312 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/fmapref_buffer".
2024-10-15 23:27:53,317 [ INFO] [Node] Executing "fmapref_buffer" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:27:53,318 [ INFO] [Node] Finished "fmapref_buffer", elapsed time 0.000777s.
2024-10-15 23:27:54,942 [ INFO] [Job 48] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer).
2024-10-15 23:27:54,946 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:27:55,294 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref".
2024-10-15 23:27:55,302 [ INFO] [Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:27:55,331 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-hmc_boldref.nii.gz dtype from int16 to float32
2024-10-15 23:27:55,422 [ INFO] [Node] Finished "ds_boldref", elapsed time 0.118382s.
2024-10-15 23:27:55,425 [ INFO] [Job 49] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).
2024-10-15 23:27:55,759 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/mcflirt".
2024-10-15 23:27:55,766 [ INFO] [Node] Executing "mcflirt" <nipype.interfaces.fsl.preprocess.MCFLIRT>
2024-10-15 23:27:56,945 [ INFO] [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:28:33,970 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:28:33,971 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:28:34,209 [ INFO] [Node] Finished "mcflirt", elapsed time 38.442083s.
2024-10-15 23:28:34,952 [ INFO] [Job 50] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt).
2024-10-15 23:28:34,958 [ INFO] [MultiProc] Running 1 tasks, and 12 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:28:35,391 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.ds_report_summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_summary".
2024-10-15 23:28:35,400 [ INFO] [Node] Executing "ds_report_summary" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:28:35,417 [ INFO] [Node] Finished "ds_report_summary", elapsed time 0.016065s.
2024-10-15 23:28:35,420 [ INFO] [Job 51] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_summary).
2024-10-15 23:28:35,822 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/ds_t1w_conform_report".
2024-10-15 23:28:35,829 [ INFO] [Node] Executing "ds_t1w_conform_report" <smriprep.interfaces.DerivativesDataSink>
2024-10-15 23:28:35,843 [ INFO] [Node] Finished "ds_t1w_conform_report", elapsed time 0.012284s.
2024-10-15 23:28:35,845 [ INFO] [Job 53] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report).
2024-10-15 23:28:36,232 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff".
2024-10-15 23:28:36,238 [ INFO] [Node] Executing "init_aff" <nipype.interfaces.ants.utils.AI>
2024-10-15 23:28:36,955 [ INFO] [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:31:51,215 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:31:51,216 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:31:51,421 [ INFO] [Node] Finished "init_aff", elapsed time 195.181727s.
2024-10-15 23:31:52,997 [ INFO] [Job 54] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).
2024-10-15 23:31:53,003 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:31:53,388 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/sources".
2024-10-15 23:31:53,395 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:31:53,397 [ INFO] [Node] Finished "sources", elapsed time 0.000517s.
2024-10-15 23:31:54,997 [ INFO] [Job 55] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).
2024-10-15 23:31:55,002 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:31:55,502 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/fsl2itk".
2024-10-15 23:31:55,550 [ INFO] [Node] Executing "fsl2itk" <niworkflows.interfaces.itk.MCFLIRT2ITK>
2024-10-15 23:31:55,550 [ WARNING] Multithreading is deprecated. Remove the num_threads input.
2024-10-15 23:31:55,742 [ INFO] [Node] Finished "fsl2itk", elapsed time 0.19153s.
2024-10-15 23:31:56,997 [ INFO] [Job 56] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).
2024-10-15 23:31:57,002 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:31:57,986 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/normalize_motion".
2024-10-15 23:31:58,005 [ INFO] [Node] Executing "normalize_motion" <niworkflows.interfaces.confounds.NormalizeMotionParams>
2024-10-15 23:31:58,010 [ INFO] [Node] Finished "normalize_motion", elapsed time 0.004342s.
2024-10-15 23:31:58,998 [ INFO] [Job 57] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).
2024-10-15 23:31:59,002 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:31:59,317 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_rmsd_header".
2024-10-15 23:31:59,335 [ INFO] [Node] Executing "add_rmsd_header" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:31:59,337 [ INFO] [Node] Finished "add_rmsd_header", elapsed time 0.001749s.
2024-10-15 23:31:59,339 [ INFO] [Job 58] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header).
2024-10-15 23:31:59,630 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff".
2024-10-15 23:31:59,637 [ INFO] [Node] Executing "init_aff" <nipype.interfaces.ants.utils.AI>
2024-10-15 23:32:01,001 [ INFO] [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:34:48,559 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:34:48,560 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:34:48,743 [ INFO] [Node] Finished "init_aff", elapsed time 169.104528s.
2024-10-15 23:34:49,036 [ INFO] [Job 59] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).
2024-10-15 23:34:49,041 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:34:49,543 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/sources".
2024-10-15 23:34:49,549 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:34:49,550 [ INFO] [Node] Finished "sources", elapsed time 0.000395s.
2024-10-15 23:34:51,036 [ INFO] [Job 60] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).
2024-10-15 23:34:51,042 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:34:51,428 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/fsl2itk".
2024-10-15 23:34:51,464 [ INFO] [Node] Executing "fsl2itk" <niworkflows.interfaces.itk.MCFLIRT2ITK>
2024-10-15 23:34:51,465 [ WARNING] Multithreading is deprecated. Remove the num_threads input.
2024-10-15 23:34:51,571 [ INFO] [Node] Finished "fsl2itk", elapsed time 0.105607s.
2024-10-15 23:34:53,037 [ INFO] [Job 61] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).
2024-10-15 23:34:53,041 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:34:53,433 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/normalize_motion".
2024-10-15 23:34:53,451 [ INFO] [Node] Executing "normalize_motion" <niworkflows.interfaces.confounds.NormalizeMotionParams>
2024-10-15 23:34:53,456 [ INFO] [Node] Finished "normalize_motion", elapsed time 0.004203s.
2024-10-15 23:34:55,038 [ INFO] [Job 62] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).
2024-10-15 23:34:55,043 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:34:55,440 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_rmsd_header".
2024-10-15 23:34:55,460 [ INFO] [Node] Executing "add_rmsd_header" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:34:55,464 [ INFO] [Node] Finished "add_rmsd_header", elapsed time 0.001982s.
2024-10-15 23:34:55,467 [ INFO] [Job 63] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header).
2024-10-15 23:34:55,955 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm".
2024-10-15 23:34:55,967 [ INFO] [Node] Executing "norm" <niworkflows.interfaces.fixes.FixHeaderRegistration>
2024-10-15 23:34:57,040 [ INFO] [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:05,166 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:05,167 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:05,383 [ INFO] [Node] Finished "norm", elapsed time 9.413491s.
2024-10-15 23:35:07,040 [ INFO] [Job 65] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).
2024-10-15 23:35:07,045 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:07,437 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/ds_xforms".
2024-10-15 23:35:07,445 [ INFO] [Node] Executing "ds_xforms" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:35:07,462 [ INFO] [Node] Finished "ds_xforms", elapsed time 0.015412s.
2024-10-15 23:35:07,465 [ INFO] [Job 66] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).
2024-10-15 23:35:07,933 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/fdisp".
2024-10-15 23:35:07,937 [ INFO] [Node] Executing "fdisp" <nipype.algorithms.confounds.FramewiseDisplacement>
2024-10-15 23:35:07,942 [ INFO] [Node] Finished "fdisp", elapsed time 0.003249s.
2024-10-15 23:35:09,040 [ INFO] [Job 67] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp).
2024-10-15 23:35:09,046 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:09,416 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_motion_headers".
2024-10-15 23:35:09,420 [ INFO] [Node] Executing "add_motion_headers" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:35:09,424 [ INFO] [Node] Finished "add_motion_headers", elapsed time 0.003198s.
2024-10-15 23:35:09,426 [ INFO] [Job 68] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers).
2024-10-15 23:35:09,793 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm".
2024-10-15 23:35:09,803 [ INFO] [Node] Executing "norm" <niworkflows.interfaces.fixes.FixHeaderRegistration>
2024-10-15 23:35:11,043 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:13,858 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:13,858 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:14,094 [ INFO] [Node] Finished "norm", elapsed time 4.288883s.
2024-10-15 23:35:15,041 [ INFO] [Job 69] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).
2024-10-15 23:35:15,045 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:15,422 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/ds_xforms".
2024-10-15 23:35:15,430 [ INFO] [Node] Executing "ds_xforms" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:35:15,442 [ INFO] [Node] Finished "ds_xforms", elapsed time 0.010779s.
2024-10-15 23:35:15,445 [ INFO] [Job 70] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).
2024-10-15 23:35:15,821 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/fdisp".
2024-10-15 23:35:15,826 [ INFO] [Node] Executing "fdisp" <nipype.algorithms.confounds.FramewiseDisplacement>
2024-10-15 23:35:15,831 [ INFO] [Node] Finished "fdisp", elapsed time 0.003762s.
2024-10-15 23:35:17,042 [ INFO] [Job 71] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp).
2024-10-15 23:35:17,046 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:17,457 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_motion_headers".
2024-10-15 23:35:17,462 [ INFO] [Node] Executing "add_motion_headers" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:35:17,466 [ INFO] [Node] Finished "add_motion_headers", elapsed time 0.003532s.
2024-10-15 23:35:17,469 [ INFO] [Job 72] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers).
2024-10-15 23:35:17,880 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
2024-10-15 23:35:17,886 [ INFO] [Node] Executing "map_brainmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2024-10-15 23:35:18,836 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:18,836 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:19,045 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:19,153 [ INFO] [Node] Finished "map_brainmask", elapsed time 1.26608s.
2024-10-15 23:35:21,043 [ INFO] [Job 74] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
2024-10-15 23:35:21,048 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:21,500 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask".
2024-10-15 23:35:21,506 [ INFO] [Node] Executing "map_brainmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2024-10-15 23:35:22,276 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:22,276 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:22,556 [ INFO] [Node] Finished "map_brainmask", elapsed time 1.048219s.
2024-10-15 23:35:23,044 [ INFO] [Job 75] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
2024-10-15 23:35:23,048 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:23,430 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header".
2024-10-15 23:35:23,435 [ INFO] [Node] Executing "fix_header" <niworkflows.interfaces.header.CopyHeader>
2024-10-15 23:35:23,505 [ INFO] [Node] Finished "fix_header", elapsed time 0.06871s.
2024-10-15 23:35:23,507 [ INFO] [Job 79] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).
2024-10-15 23:35:23,801 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header".
2024-10-15 23:35:23,806 [ INFO] [Node] Executing "fix_header" <niworkflows.interfaces.header.CopyHeader>
2024-10-15 23:35:23,857 [ INFO] [Node] Finished "fix_header", elapsed time 0.049541s.
2024-10-15 23:35:23,860 [ INFO] [Job 80] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).
2024-10-15 23:35:25,046 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:25,385 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct".
2024-10-15 23:35:25,392 [ INFO] [Node] Executing "n4_correct" <niworkflows.interfaces.fixes.FixN4BiasFieldCorrection>
2024-10-15 23:35:27,047 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:27,068 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:27,069 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:27,433 [ INFO] [Node] Finished "n4_correct", elapsed time 2.039906s.
2024-10-15 23:35:29,044 [ INFO] [Job 83] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).
2024-10-15 23:35:29,048 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:29,337 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct".
2024-10-15 23:35:29,343 [ INFO] [Node] Executing "n4_correct" <niworkflows.interfaces.fixes.FixN4BiasFieldCorrection>
2024-10-15 23:35:31,048 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:31,149 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:31,150 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:31,466 [ INFO] [Node] Finished "n4_correct", elapsed time 2.121278s.
2024-10-15 23:35:33,046 [ INFO] [Job 84] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).
2024-10-15 23:35:33,051 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:33,431 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
2024-10-15 23:35:33,437 [ INFO] [Node] Executing "skullstrip_first_pass" <nipype.interfaces.fsl.preprocess.BET>
2024-10-15 23:35:35,048 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:35,534 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:35,535 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:35,774 [ INFO] [Node] Finished "skullstrip_first_pass", elapsed time 2.331352s.
2024-10-15 23:35:37,045 [ INFO] [Job 88] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
2024-10-15 23:35:37,049 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:37,389 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref".
2024-10-15 23:35:37,398 [ INFO] [Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:35:37,425 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-coreg_boldref.nii.gz dtype from int16 to float32
2024-10-15 23:35:37,524 [ INFO] [Node] Finished "ds_boldref", elapsed time 0.123477s.
2024-10-15 23:35:37,527 [ INFO] [Job 89] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).
2024-10-15 23:35:37,861 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass".
2024-10-15 23:35:37,866 [ INFO] [Node] Executing "skullstrip_first_pass" <nipype.interfaces.fsl.preprocess.BET>
2024-10-15 23:35:39,049 [ INFO] [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:39,993 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:39,994 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:35:40,214 [ INFO] [Node] Finished "skullstrip_first_pass", elapsed time 2.346436s.
2024-10-15 23:35:41,047 [ INFO] [Job 90] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
2024-10-15 23:35:41,051 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:41,433 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref".
2024-10-15 23:35:41,445 [ INFO] [Node] Executing "ds_boldref" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:35:41,474 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-coreg_boldref.nii.gz dtype from int16 to float32
2024-10-15 23:35:41,577 [ INFO] [Node] Finished "ds_boldref", elapsed time 0.12996s.
2024-10-15 23:35:41,580 [ INFO] [Job 91] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).
2024-10-15 23:35:41,901 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate".
2024-10-15 23:35:41,905 [ INFO] [Node] Executing "first_dilate" <niworkflows.interfaces.nibabel.BinaryDilation>
2024-10-15 23:35:41,957 [ WARNING] WARNING: `np.bool8` is a deprecated alias for `np.bool_`. (Deprecated NumPy 1.24)
2024-10-15 23:35:41,958 [ WARNING] WARNING: `np.bool8` is a deprecated alias for `np.bool_`. (Deprecated NumPy 1.24)
2024-10-15 23:35:42,731 [ INFO] [Node] Finished "first_dilate", elapsed time 0.824911s.
2024-10-15 23:35:43,048 [ INFO] [Job 95] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).
2024-10-15 23:35:43,052 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:43,366 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldreg_wf/sources".
2024-10-15 23:35:43,371 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:35:43,372 [ INFO] [Node] Finished "sources", elapsed time 0.00044s.
2024-10-15 23:35:45,047 [ INFO] [Job 96] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources).
2024-10-15 23:35:45,051 [ INFO] [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:35:45,526 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/boldref_bold".
2024-10-15 23:35:45,531 [ INFO] [Node] Executing "boldref_bold" <fmriprep.interfaces.resampling.ResampleSeries>
2024-10-15 23:35:45,679 [ WARNING] WARNING: Reference space not set
2024-10-15 23:35:45,696 [ WARNING] WARNING: Reference space not set
2024-10-15 23:35:47,051 [ INFO] [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:06,942 [ INFO] [Node] Finished "boldref_bold", elapsed time 21.410239s.
2024-10-15 23:36:07,051 [ INFO] [Job 97] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold).
2024-10-15 23:36:07,055 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:07,430 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref".
2024-10-15 23:36:07,453 [ INFO] [Node] Executing "gen_ref" <niworkflows.interfaces.nibabel.GenerateSamplingReference>
2024-10-15 23:36:09,054 [ INFO] [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:09,501 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.
2024-10-15 23:36:09,871 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.
2024-10-15 23:36:10,892 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.
2024-10-15 23:36:10,930 [ INFO] [Node] Finished "gen_ref", elapsed time 3.47584s.
2024-10-15 23:36:11,052 [ INFO] [Job 98] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref).
2024-10-15 23:36:11,056 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:11,452 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate".
2024-10-15 23:36:11,457 [ INFO] [Node] Executing "first_dilate" <niworkflows.interfaces.nibabel.BinaryDilation>
2024-10-15 23:36:11,755 [ INFO] [Node] Finished "first_dilate", elapsed time 0.296964s.
2024-10-15 23:36:13,053 [ INFO] [Job 99] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).
2024-10-15 23:36:13,058 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:13,372 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldreg_wf/sources".
2024-10-15 23:36:13,380 [ INFO] [Node] Executing "sources" <fmriprep.interfaces.bids.BIDSURI>
2024-10-15 23:36:13,381 [ INFO] [Node] Finished "sources", elapsed time 0.000385s.
2024-10-15 23:36:15,054 [ INFO] [Job 100] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources).
2024-10-15 23:36:15,058 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:15,391 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/boldref_bold".
2024-10-15 23:36:15,399 [ INFO] [Node] Executing "boldref_bold" <fmriprep.interfaces.resampling.ResampleSeries>
2024-10-15 23:36:15,597 [ WARNING] WARNING: Reference space not set
2024-10-15 23:36:15,620 [ WARNING] WARNING: Reference space not set
2024-10-15 23:36:17,057 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise
2024-10-15 23:36:21,860 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:36:21,860 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:36:22,004 [ INFO] [Node] Finished "_denoise0", elapsed time 546.131542s.
2024-10-15 23:36:23,055 [ INFO] [Job 41] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise).
2024-10-15 23:36:23,060 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
2024-10-15 23:36:23,516 [ INFO] [Node] Setting-up "_anat_conform0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_conform/mapflow/_anat_conform0".
2024-10-15 23:36:23,518 [ INFO] [Node] Executing "_anat_conform0" <niworkflows.interfaces.images.Conform>
2024-10-15 23:36:25,058 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
2024-10-15 23:36:26,637 [ INFO] [Node] Finished "_anat_conform0", elapsed time 3.11882s.
2024-10-15 23:36:27,056 [ INFO] [Job 52] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform).
2024-10-15 23:36:27,060 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
2024-10-15 23:36:27,417 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/get1st".
2024-10-15 23:36:27,422 [ INFO] [Node] Executing "get1st" <nipype.interfaces.utility.base.Select>
2024-10-15 23:36:27,424 [ INFO] [Node] Finished "get1st", elapsed time 0.000568s.
2024-10-15 23:36:29,056 [ INFO] [Job 64] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st).
2024-10-15 23:36:29,061 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold
2024-10-15 23:36:29,459 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_validate".
2024-10-15 23:36:29,462 [ INFO] [Node] Executing "anat_validate" <niworkflows.interfaces.header.ValidateImage>
2024-10-15 23:36:32,735 [ INFO] [Node] Finished "boldref_bold", elapsed time 17.33471s.
2024-10-15 23:36:33,333 [ INFO] [Node] Finished "anat_validate", elapsed time 3.869044s.
2024-10-15 23:36:33,336 [ INFO] [Job 73] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate).
2024-10-15 23:36:33,724 [ INFO] [Job 101] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold).
2024-10-15 23:36:33,729 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.70/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref
2024-10-15 23:36:33,735 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref".
2024-10-15 23:36:33,756 [ INFO] [Node] Executing "gen_ref" <niworkflows.interfaces.nibabel.GenerateSamplingReference>
2024-10-15 23:36:34,160 [ INFO] [Node] Setting-up "_truncate_images0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0".
2024-10-15 23:36:34,163 [ INFO] [Node] Executing "_truncate_images0" <nipype.interfaces.ants.utils.ImageMath>
2024-10-15 23:36:35,728 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref
2024-10-15 23:36:37,024 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.
2024-10-15 23:36:37,420 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.
2024-10-15 23:36:38,506 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.
2024-10-15 23:36:38,544 [ INFO] [Node] Finished "gen_ref", elapsed time 4.787199s.
2024-10-15 23:36:38,643 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:36:38,644 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:36:39,726 [ INFO] [Job 102] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref).
2024-10-15 23:36:39,730 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images
2024-10-15 23:36:40,214 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library "nireports".
2024-10-15 23:36:41,169 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library "nireports".
2024-10-15 23:36:41,188 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/recon_config".
2024-10-15 23:36:41,197 [ INFO] [Node] Executing "recon_config" <niworkflows.interfaces.freesurfer.FSDetectInputs>
2024-10-15 23:36:41,287 [ INFO] [Node] Finished "recon_config", elapsed time 0.088071s.
2024-10-15 23:36:41,726 [ INFO] [Job 77] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config).
2024-10-15 23:36:41,731 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images
2024-10-15 23:36:41,790 [ INFO] [Node] Finished "_truncate_images0", elapsed time 7.625552s.
2024-10-15 23:36:42,151 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fov_check".
2024-10-15 23:36:42,155 [ INFO] [Node] Executing "fov_check" <nipype.interfaces.utility.wrappers.Function>
2024-10-15 23:36:42,931 [ INFO] [Node] Finished "fov_check", elapsed time 0.774629s.
2024-10-15 23:36:43,726 [ INFO] [Job 76] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images).
2024-10-15 23:36:43,729 [ INFO] [Job 78] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check).
2024-10-15 23:36:43,732 [ INFO] [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-15 23:36:44,125 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/autorecon1".
2024-10-15 23:36:44,127 [ INFO] [Node] Setting-up "_inu_n40" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40".
2024-10-15 23:36:44,130 [ INFO] [Node] Executing "_inu_n40" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2024-10-15 23:36:44,134 [ INFO] [Node] Executing "autorecon1" <smriprep.interfaces.freesurfer.ReconAll>
2024-10-15 23:36:45,728 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4
2024-10-15 23:39:23,637 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:39:23,637 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:39:27,547 [ INFO] [Node] Finished "_inu_n40", elapsed time 163.416234s.
2024-10-15 23:39:27,758 [ INFO] [Job 81] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4).
2024-10-15 23:39:27,763 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:39:28,134 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_target".
2024-10-15 23:39:28,138 [ INFO] [Node] Executing "res_target" <niworkflows.interfaces.nibabel.RegridToZooms>
2024-10-15 23:39:29,761 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:39:30,253 [ INFO] [Node] Finished "res_target", elapsed time 2.113633s.
2024-10-15 23:39:31,760 [ INFO] [Job 85] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target).
2024-10-15 23:39:31,765 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:39:32,229 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_target".
2024-10-15 23:39:32,233 [ INFO] [Node] Executing "lap_target" <nipype.interfaces.ants.utils.ImageMath>
2024-10-15 23:39:33,764 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:39:44,050 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:39:44,051 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:39:46,201 [ INFO] [Node] Finished "lap_target", elapsed time 13.966291s.
2024-10-15 23:39:47,763 [ INFO] [Job 86] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target).
2024-10-15 23:39:47,767 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:39:48,144 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/init_aff".
2024-10-15 23:39:48,151 [ INFO] [Node] Executing "init_aff" <nipype.interfaces.ants.utils.AI>
2024-10-15 23:39:49,765 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:41:47,024 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:41:47,024 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:41:47,333 [ INFO] [Node] Finished "init_aff", elapsed time 119.179862s.
2024-10-15 23:41:47,789 [ INFO] [Job 92] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff).
2024-10-15 23:41:47,794 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:41:48,213 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_target".
2024-10-15 23:41:48,218 [ INFO] [Node] Executing "mrg_target" <nipype.interfaces.utility.base.Merge>
2024-10-15 23:41:48,219 [ INFO] [Node] Finished "mrg_target", elapsed time 0.000448s.
2024-10-15 23:41:49,789 [ INFO] [Job 93] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target).
2024-10-15 23:41:49,794 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:41:50,255 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/norm".
2024-10-15 23:41:50,270 [ INFO] [Node] Executing "norm" <niworkflows.interfaces.fixes.FixHeaderRegistration>
2024-10-15 23:41:51,792 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 2.00/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1
2024-10-15 23:48:41,343 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:48:41,344 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:48:41,832 [ INFO] [Node] Finished "autorecon1", elapsed time 717.696003s.
2024-10-15 23:48:41,898 [ INFO] [Job 82] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1).
2024-10-15 23:48:41,906 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:48:42,626 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fsnative2t1w_xfm".
2024-10-15 23:48:42,633 [ INFO] [Node] Executing "fsnative2t1w_xfm" <niworkflows.interfaces.freesurfer.PatchedRobustRegister>
2024-10-15 23:48:43,900 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:49:37,106 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:49:37,107 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:49:37,478 [ INFO] [Node] Finished "fsnative2t1w_xfm", elapsed time 54.843542s.
2024-10-15 23:49:37,910 [ INFO] [Job 87] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm).
2024-10-15 23:49:37,915 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:49:38,444 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/lta2itk".
2024-10-15 23:49:38,451 [ INFO] [Node] Executing "lta2itk" <niworkflows.interfaces.nitransforms.ConcatenateXFMs>
2024-10-15 23:49:38,457 [ WARNING] WARNING: Reference space not set
2024-10-15 23:49:38,459 [ INFO] [Node] Finished "lta2itk", elapsed time 0.006945s.
2024-10-15 23:49:38,461 [ INFO] [Job 94] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk).
2024-10-15 23:49:38,952 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask".
2024-10-15 23:49:38,960 [ INFO] [Node] Executing "first_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2024-10-15 23:49:39,028 [ INFO] [Node] Finished "first_mask", elapsed time 0.066296s.
2024-10-15 23:49:39,911 [ INFO] [Job 106] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).
2024-10-15 23:49:39,915 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:49:40,413 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_anat_fsnative".
2024-10-15 23:49:40,421 [ INFO] [Node] Executing "ds_anat_fsnative" <smriprep.interfaces.DerivativesDataSink>
2024-10-15 23:49:40,436 [ INFO] [Node] Finished "ds_anat_fsnative", elapsed time 0.012639s.
2024-10-15 23:49:40,439 [ INFO] [Job 104] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative).
2024-10-15 23:49:40,900 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_fsnative_anat".
2024-10-15 23:49:40,908 [ INFO] [Node] Executing "ds_fsnative_anat" <smriprep.interfaces.DerivativesDataSink>
2024-10-15 23:49:40,920 [ INFO] [Node] Finished "ds_fsnative_anat", elapsed time 0.009851s.
2024-10-15 23:49:40,923 [ INFO] [Job 105] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat).
2024-10-15 23:49:41,398 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask".
2024-10-15 23:49:41,404 [ INFO] [Node] Executing "first_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2024-10-15 23:49:41,461 [ INFO] [Node] Finished "first_mask", elapsed time 0.055631s.
2024-10-15 23:49:41,911 [ INFO] [Job 107] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).
2024-10-15 23:49:41,915 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:49:42,375 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize".
2024-10-15 23:49:42,380 [ INFO] [Node] Executing "unifize" <nipype.interfaces.afni.utils.Unifize>
2024-10-15 23:49:43,913 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:51:39,923 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:51:39,924 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:51:40,118 [ INFO] [Node] Finished "unifize", elapsed time 117.737009s.
2024-10-15 23:51:41,937 [ INFO] [Job 110] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).
2024-10-15 23:51:41,943 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:51:42,403 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize".
2024-10-15 23:51:42,408 [ INFO] [Node] Executing "unifize" <nipype.interfaces.afni.utils.Unifize>
2024-10-15 23:51:43,940 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:13,995 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:13,995 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:14,342 [ INFO] [Node] Finished "unifize", elapsed time 91.932257s.
2024-10-15 23:53:15,956 [ INFO] [Job 111] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).
2024-10-15 23:53:15,962 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:16,379 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
2024-10-15 23:53:16,385 [ INFO] [Node] Executing "fixhdr_unifize" <niworkflows.interfaces.header.CopyXForm>
2024-10-15 23:53:16,441 [ INFO] [Node] Finished "fixhdr_unifize", elapsed time 0.054894s.
2024-10-15 23:53:17,956 [ INFO] [Job 114] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
2024-10-15 23:53:17,961 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:18,335 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize".
2024-10-15 23:53:18,340 [ INFO] [Node] Executing "fixhdr_unifize" <niworkflows.interfaces.header.CopyXForm>
2024-10-15 23:53:18,388 [ INFO] [Node] Finished "fixhdr_unifize", elapsed time 0.046504s.
2024-10-15 23:53:19,956 [ INFO] [Job 115] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
2024-10-15 23:53:19,963 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:20,331 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
2024-10-15 23:53:20,336 [ INFO] [Node] Executing "skullstrip_second_pass" <nipype.interfaces.afni.preprocess.Automask>
2024-10-15 23:53:21,110 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:21,110 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:21,363 [ INFO] [Node] Finished "skullstrip_second_pass", elapsed time 1.025038s.
2024-10-15 23:53:21,957 [ INFO] [Job 119] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
2024-10-15 23:53:21,961 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:22,338 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass".
2024-10-15 23:53:22,344 [ INFO] [Node] Executing "skullstrip_second_pass" <nipype.interfaces.afni.preprocess.Automask>
2024-10-15 23:53:22,473 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:22,473 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:22,732 [ INFO] [Node] Finished "skullstrip_second_pass", elapsed time 0.386742s.
2024-10-15 23:53:23,957 [ INFO] [Job 120] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
2024-10-15 23:53:23,965 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:24,287 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
2024-10-15 23:53:24,293 [ INFO] [Node] Executing "fixhdr_skullstrip2" <niworkflows.interfaces.header.CopyXForm>
2024-10-15 23:53:24,317 [ INFO] [Node] Finished "fixhdr_skullstrip2", elapsed time 0.023341s.
2024-10-15 23:53:25,957 [ INFO] [Job 122] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
2024-10-15 23:53:25,962 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:26,444 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2".
2024-10-15 23:53:26,449 [ INFO] [Node] Executing "fixhdr_skullstrip2" <niworkflows.interfaces.header.CopyXForm>
2024-10-15 23:53:26,472 [ INFO] [Node] Finished "fixhdr_skullstrip2", elapsed time 0.021532s.
2024-10-15 23:53:27,958 [ INFO] [Job 123] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
2024-10-15 23:53:27,962 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:28,335 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks".
2024-10-15 23:53:28,341 [ INFO] [Node] Executing "combine_masks" <nipype.interfaces.fsl.maths.BinaryMaths>
2024-10-15 23:53:28,448 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:28,448 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:28,738 [ INFO] [Node] Finished "combine_masks", elapsed time 0.395673s.
2024-10-15 23:53:29,959 [ INFO] [Job 125] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).
2024-10-15 23:53:29,963 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:30,347 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks".
2024-10-15 23:53:30,354 [ INFO] [Node] Executing "combine_masks" <nipype.interfaces.fsl.maths.BinaryMaths>
2024-10-15 23:53:30,408 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:30,408 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-15 23:53:30,673 [ INFO] [Node] Finished "combine_masks", elapsed time 0.317749s.
2024-10-15 23:53:31,959 [ INFO] [Job 126] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).
2024-10-15 23:53:31,962 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:32,339 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask".
2024-10-15 23:53:32,344 [ INFO] [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2024-10-15 23:53:32,398 [ INFO] [Node] Finished "apply_mask", elapsed time 0.052575s.
2024-10-15 23:53:33,959 [ INFO] [Job 129] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).
2024-10-15 23:53:33,964 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:34,313 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask".
2024-10-15 23:53:34,321 [ INFO] [Node] Executing "ds_boldmask" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:53:34,351 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-brain_mask.nii.gz dtype from float32 to uint8
2024-10-15 23:53:34,417 [ INFO] [Node] Finished "ds_boldmask", elapsed time 0.094115s.
2024-10-15 23:53:34,420 [ INFO] [Job 130] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).
2024-10-15 23:53:34,759 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask".
2024-10-15 23:53:34,764 [ INFO] [Node] Executing "apply_mask" <niworkflows.interfaces.nibabel.ApplyMask>
2024-10-15 23:53:34,812 [ INFO] [Node] Finished "apply_mask", elapsed time 0.047292s.
2024-10-15 23:53:35,959 [ INFO] [Job 131] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).
2024-10-15 23:53:35,964 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:36,323 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask".
2024-10-15 23:53:36,330 [ INFO] [Node] Executing "ds_boldmask" <fmriprep.interfaces.DerivativesDataSink>
2024-10-15 23:53:36,352 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-brain_mask.nii.gz dtype from float32 to uint8
2024-10-15 23:53:36,396 [ INFO] [Node] Finished "ds_boldmask", elapsed time 0.064103s.
2024-10-15 23:53:36,399 [ INFO] [Job 132] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).
2024-10-15 23:53:36,769 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/dvars".
2024-10-15 23:53:36,943 [ INFO] [Node] Executing "dvars" <nipype.algorithms.confounds.ComputeDVARS>
2024-10-15 23:53:37,962 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:47,291 [ INFO] [Node] Finished "dvars", elapsed time 10.346177s.
2024-10-15 23:53:47,962 [ INFO] [Job 135] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars).
2024-10-15 23:53:47,967 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:48,330 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcompcor".
2024-10-15 23:53:48,338 [ INFO] [Node] Executing "tcompcor" <niworkflows.interfaces.patches.RobustTCompCor>
2024-10-15 23:53:49,965 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:50,313 [ WARNING] WARNING: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
2024-10-15 23:53:50,345 [ INFO] [Node] Finished "tcompcor", elapsed time 2.006826s.
2024-10-15 23:53:51,963 [ INFO] [Job 136] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor).
2024-10-15 23:53:51,970 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:53:52,330 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/dvars".
2024-10-15 23:53:52,337 [ INFO] [Node] Executing "dvars" <nipype.algorithms.confounds.ComputeDVARS>
2024-10-15 23:53:53,966 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:04,312 [ INFO] [Node] Finished "dvars", elapsed time 11.973813s.
2024-10-15 23:54:05,966 [ INFO] [Job 137] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars).
2024-10-15 23:54:05,971 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:06,358 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcompcor".
2024-10-15 23:54:06,367 [ INFO] [Node] Executing "tcompcor" <niworkflows.interfaces.patches.RobustTCompCor>
2024-10-15 23:54:07,969 [ INFO] [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:08,537 [ WARNING] WARNING: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.
To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.
2024-10-15 23:54:08,568 [ INFO] [Node] Finished "tcompcor", elapsed time 2.200094s.
2024-10-15 23:54:09,967 [ INFO] [Job 138] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor).
2024-10-15 23:54:09,972 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:10,321 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_dvars_header".
2024-10-15 23:54:10,325 [ INFO] [Node] Executing "add_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:54:10,328 [ INFO] [Node] Finished "add_dvars_header", elapsed time 0.001837s.
2024-10-15 23:54:10,330 [ INFO] [Job 144] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header).
2024-10-15 23:54:10,659 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_std_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_std_dvars_header".
2024-10-15 23:54:10,663 [ INFO] [Node] Executing "add_std_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:54:10,666 [ INFO] [Node] Finished "add_std_dvars_header", elapsed time 0.001776s.
2024-10-15 23:54:10,669 [ INFO] [Job 145] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_std_dvars_header).
2024-10-15 23:54:11,315 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_filter" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcc_metadata_filter".
2024-10-15 23:54:11,319 [ INFO] [Node] Executing "tcc_metadata_filter" <fmriprep.interfaces.confounds.FilterDropped>
2024-10-15 23:54:11,342 [ INFO] [Node] Finished "tcc_metadata_filter", elapsed time 0.022247s.
2024-10-15 23:54:11,968 [ INFO] [Job 146] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_filter).
2024-10-15 23:54:11,973 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:12,259 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_dvars_header".
2024-10-15 23:54:12,263 [ INFO] [Node] Executing "add_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:54:12,265 [ INFO] [Node] Finished "add_dvars_header", elapsed time 0.001593s.
2024-10-15 23:54:12,267 [ INFO] [Job 147] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_dvars_header).
2024-10-15 23:54:12,549 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_std_dvars_header" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_std_dvars_header".
2024-10-15 23:54:12,553 [ INFO] [Node] Executing "add_std_dvars_header" <niworkflows.interfaces.utility.AddTSVHeader>
2024-10-15 23:54:12,555 [ INFO] [Node] Finished "add_std_dvars_header", elapsed time 0.001757s.
2024-10-15 23:54:12,557 [ INFO] [Job 148] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_std_dvars_header).
2024-10-15 23:54:12,837 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_filter" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcc_metadata_filter".
2024-10-15 23:54:12,841 [ INFO] [Node] Executing "tcc_metadata_filter" <fmriprep.interfaces.confounds.FilterDropped>
2024-10-15 23:54:12,850 [ INFO] [Node] Finished "tcc_metadata_filter", elapsed time 0.006373s.
2024-10-15 23:54:13,968 [ INFO] [Job 149] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_filter).
2024-10-15 23:54:13,972 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:14,274 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_fmt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcc_metadata_fmt".
2024-10-15 23:54:14,280 [ INFO] [Node] Executing "tcc_metadata_fmt" <niworkflows.interfaces.utility.TSV2JSON>
2024-10-15 23:54:14,292 [ INFO] [Node] Finished "tcc_metadata_fmt", elapsed time 0.008016s.
2024-10-15 23:54:15,968 [ INFO] [Job 153] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_fmt).
2024-10-15 23:54:15,972 [ INFO] [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-15 23:54:16,246 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_fmt" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcc_metadata_fmt".
2024-10-15 23:54:16,254 [ INFO] [Node] Executing "tcc_metadata_fmt" <niworkflows.interfaces.utility.TSV2JSON>
2024-10-15 23:54:16,264 [ INFO] [Node] Finished "tcc_metadata_fmt", elapsed time 0.005553s.
2024-10-15 23:54:17,969 [ INFO] [Job 154] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_fmt).
2024-10-15 23:54:17,973 [ INFO] [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm
2024-10-16 00:30:55,895 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:30:55,898 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:30:58,540 [ INFO] [Node] Finished "norm", elapsed time 2948.267125s.
2024-10-16 00:30:58,798 [ INFO] [Job 103] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm).
2024-10-16 00:30:58,803 [ INFO] [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-16 00:30:59,228 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_wmmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/map_wmmask".
2024-10-16 00:30:59,233 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/map_brainmask".
2024-10-16 00:30:59,240 [ INFO] [Node] Executing "map_wmmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2024-10-16 00:30:59,252 [ INFO] [Node] Executing "map_brainmask" <niworkflows.interfaces.fixes.FixHeaderApplyTransforms>
2024-10-16 00:31:00,800 [ INFO] [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 8.00/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_wmmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask
2024-10-16 00:31:22,118 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:22,118 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:24,039 [ INFO] [Node] Finished "map_wmmask", elapsed time 24.797449s.
2024-10-16 00:31:24,804 [ INFO] [Job 109] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_wmmask).
2024-10-16 00:31:24,808 [ INFO] [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask
2024-10-16 00:31:25,162 [ INFO] [Node] Setting-up "_inu_n4_final0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/inu_n4_final/mapflow/_inu_n4_final0".
2024-10-16 00:31:25,165 [ INFO] [Node] Executing "_inu_n4_final0" <nipype.interfaces.ants.segmentation.N4BiasFieldCorrection>
2024-10-16 00:31:26,806 [ INFO] [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 8.80/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask
2024-10-16 00:31:29,768 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:29,769 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:31,663 [ INFO] [Node] Finished "map_brainmask", elapsed time 32.409782s.
2024-10-16 00:31:32,805 [ INFO] [Job 108] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.map_brainmask).
2024-10-16 00:31:32,810 [ INFO] [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:33,123 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.thr_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/thr_brainmask".
2024-10-16 00:31:33,128 [ INFO] [Node] Executing "thr_brainmask" <nipype.interfaces.ants.utils.ThresholdImage>
2024-10-16 00:31:34,435 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:34,436 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:34,807 [ INFO] [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.thr_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:35,187 [ INFO] [Node] Finished "thr_brainmask", elapsed time 2.057355s.
2024-10-16 00:31:36,806 [ INFO] [Job 112] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.thr_brainmask).
2024-10-16 00:31:36,810 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:37,098 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.dil_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/dil_brainmask".
2024-10-16 00:31:37,102 [ INFO] [Node] Executing "dil_brainmask" <nipype.interfaces.ants.utils.ImageMath>
2024-10-16 00:31:38,809 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.dil_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:38,835 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:38,835 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:39,617 [ INFO] [Node] Finished "dil_brainmask", elapsed time 2.513654s.
2024-10-16 00:31:40,806 [ INFO] [Job 116] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.dil_brainmask).
2024-10-16 00:31:40,811 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:41,107 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.03_pad_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/03_pad_mask".
2024-10-16 00:31:41,111 [ INFO] [Node] Executing "03_pad_mask" <nipype.interfaces.ants.utils.ImageMath>
2024-10-16 00:31:42,668 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:42,669 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:42,809 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.03_pad_mask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:42,956 [ INFO] [Node] Finished "03_pad_mask", elapsed time 1.842985s.
2024-10-16 00:31:44,806 [ INFO] [Job 117] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.03_pad_mask).
2024-10-16 00:31:44,810 [ INFO] [MultiProc] Running 1 tasks, and 1 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:45,091 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.get_brainmask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/get_brainmask".
2024-10-16 00:31:45,096 [ INFO] [Node] Executing "get_brainmask" <nipype.interfaces.ants.utils.ImageMath>
2024-10-16 00:31:46,810 [ INFO] [MultiProc] Running 2 tasks, and 0 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.get_brainmask
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:31:46,882 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:46,882 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:31:47,668 [ INFO] [Node] Finished "get_brainmask", elapsed time 2.570554s.
2024-10-16 00:31:48,808 [ INFO] [Job 121] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.get_brainmask).
2024-10-16 00:31:48,812 [ INFO] [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final
2024-10-16 00:32:06,806 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:32:06,806 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
2024-10-16 00:32:14,409 [ INFO] [Node] Finished "_inu_n4_final0", elapsed time 49.242739s.
2024-10-16 00:32:14,813 [ INFO] [Job 113] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4_final).
2024-10-16 00:32:14,820 [ INFO] [MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
2024-10-16 00:32:15,106 [ INFO] [Node] Setting-up "fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.01_atropos" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/atropos_wf/01_atropos".
2024-10-16 00:32:15,111 [ INFO] [Node] Setting-up "_apply_mask0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/apply_mask/mapflow/_apply_mask0".
2024-10-16 00:32:15,113 [ INFO] [Node] Executing "01_atropos" <nipype.interfaces.ants.segmentation.Atropos>
2024-10-16 00:32:15,118 [ INFO] [Node] Executing "_apply_mask0" <niworkflows.interfaces.nibabel.ApplyMask>
2024-10-16 00:32:16,580 [ INFO] [Node] Finished "_apply_mask0", elapsed time 1.460045s.
2024-10-16 00:32:16,814 [ INFO] [Job 118] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.apply_mask).
2024-10-16 00:32:16,818 [ INFO] [MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.atropos_wf.01_atropos
2024-10-16 00:33:18,645 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.
fMRIprep Results#
The full result report is in fmriprep-output/sub-08.html and you can open this webpage in Jupyterlab or in the browser. Here a few items from the report as an example and for a quick check:
T1 and brain mask#
Template T1-weighted image (if several T1w images were found), with contours delineating the detected brain mask and brain tissue segmentations.
from IPython.core.display import SVG
SVG(filename='fmriprep-output/sub-08/figures/sub-08_dseg.svg')
Surfaces#
Surfaces (white and pial) reconstructed with FreeSurfer (recon-all) overlaid on the participant’s T1w template.
from IPython.core.display import SVG
SVG(filename='fmriprep-output/sub-08/figures/sub-08_desc-reconall_T1w.svg')
EPI-space to T1-space#
from IPython.core.display import SVG
SVG(filename='fmriprep-output/sub-08/figures/sub-08_task-flanker_run-1_desc-coreg_bold.svg')
Brain mask and (anatomical/temporal) CompCor ROIs#
Brain mask calculated on the BOLD signal (red contour), along with the regions of interest (ROIs) used for the estimation of physiological and movement confounding components that can be then used as nuisance regressors in analysis. The anatomical CompCor ROI (magenta contour) is a mask combining CSF and WM (white-matter), where voxels containing a minimal partial volume of GM have been removed. The temporal CompCor ROI (blue contour) contains the top 2% most variable voxels within the brain mask. The brain edge (or crown) ROI (green contour) picks signals outside but close to the brain, which are decomposed into 24 principal components.
from IPython.core.display import SVG
SVG(filename='fmriprep-output/sub-08/figures/sub-08_task-flanker_run-1_desc-rois_bold.svg')
Bold Summary#
Summary statistics are plotted, which may reveal trends or artifacts in the BOLD data. Global signals calculated within the whole-brain (GS), within the white-matter (WM) and within cerebro-spinal fluid (CSF) show the mean BOLD signal in their corresponding masks. DVARS and FD show the standardized DVARS and framewise-displacement measures for each time point. A carpet plot shows the time series for all voxels within the brain mask, or if –cifti-output was enabled, all grayordinates. Voxels are grouped into cortical (dark/light blue), and subcortical (orange) gray matter, cerebellum (green) and white matter and CSF (red), indicated by the color map on the left-hand side.
from IPython.core.display import SVG
SVG(filename='fmriprep-output/sub-08/figures/sub-08_task-flanker_run-1_desc-carpetplot_bold.svg')
