{
"cells": [
{
"cell_type": "markdown",
"metadata": {
"colab_type": "text",
"id": "view-in-github"
},
"source": [
"![\"Open](\"https://colab.research.google.com/assets/colab-badge.svg\")
"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# fMRIprep Example\n",
"\n",
"Author: Steffen Bollmann"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "JkhI6CLRoPU_"
},
"source": [
"## Setup Neurodesk"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "Jfdj9uK8fIEP",
"outputId": "e286b923-463e-4ca8-8f2a-c03d27d8a872"
},
"outputs": [],
"source": [
"%%capture\n",
"import os\n",
"import sys\n",
"IN_COLAB = 'google.colab' in sys.modules\n",
"\n",
"if IN_COLAB:\n",
" os.environ[\"LD_PRELOAD\"] = \"\";\n",
" os.environ[\"APPTAINER_BINDPATH\"] = \"/content,/tmp,/cvmfs\"\n",
" os.environ[\"MPLCONFIGDIR\"] = \"/content/matplotlib-mpldir\"\n",
" os.environ[\"LMOD_CMD\"] = \"/usr/share/lmod/lmod/libexec/lmod\"\n",
"\n",
" !curl -J -O https://raw.githubusercontent.com/NeuroDesk/neurocommand/main/googlecolab_setup.sh\n",
" !chmod +x googlecolab_setup.sh\n",
" !./googlecolab_setup.sh\n",
"\n",
" os.environ[\"MODULEPATH\"] = ':'.join(map(str, list(map(lambda x: os.path.join(os.path.abspath('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/'), x),os.listdir('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/')))))\n"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"tags": []
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"vendor_id\t: AuthenticAMD\n",
"model name\t: AMD EPYC-Rome Processor\n"
]
}
],
"source": [
"# Output CPU information:\n",
"!cat /proc/cpuinfo | grep 'vendor' | uniq\n",
"!cat /proc/cpuinfo | grep 'model name' | uniq"
]
},
{
"cell_type": "markdown",
"metadata": {
"id": "Emcl6_v2oS8w"
},
"source": [
"## Run fMRIprep"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "KP-zWRC-fpq-",
"outputId": "5d32f567-153d-4d5a-e181-01eb08c8ac96"
},
"outputs": [
{
"data": {
"text/plain": [
"['fmriprep/24.1.0']"
]
},
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"# load fmriprep\n",
"import lmod\n",
"import os\n",
"await lmod.load('fmriprep/24.1.0')\n",
"await lmod.list()"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {
"id": "HCuMtD1jfsOh"
},
"outputs": [],
"source": [
"# Request a freesurfer license and store it in your homedirectory. This is just an exampe - please replace with your license id:\n",
"!echo \"Steffen.Bollmann@cai.uq.edu.au\" > ~/.license\n",
"!echo \"21029\" >> ~/.license\n",
"!echo \"*Cqyn12sqTCxo\" >> ~/.license\n",
"!echo \"FSxgcvGkNR59Y\" >> ~/.license"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {
"colab": {
"base_uri": "https://localhost:8080/"
},
"id": "B2b1ZHDFfu7a",
"outputId": "dc408c99-c534-4a43-b349-eb6a4e57d52c",
"scrolled": true,
"tags": []
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[0m\u001b[0m"
]
}
],
"source": [
"# download data\n",
"!datalad install https://github.com/OpenNeuroDatasets/ds000102.git\n",
"!cd ds000102 && datalad get sub-08"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {
"id": "n_3LSJARfy5K",
"scrolled": true,
"tags": []
},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:24:28,970 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies\n",
"2024-10-15 23:24:33,274 [ INFO] Telemetry system to collect crashes and errors is enabled - thanks for your feedback!. Use option ``--notrack`` to opt out.\n",
"2024-10-15 23:24:34,028 [ WARNING] WARNING: `sentry_sdk.Hub` is deprecated and will be removed in a future major release. Please consult our 1.x to 2.x migration guide for details on how to migrate `Hub` usage to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x\n",
"2024-10-15 23:24:36,548 [ WARNING] WARNING: sentry_sdk.configure_scope is deprecated and will be removed in the next major version. Please consult our migration guide to learn how to migrate to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x#scope-configuring\n",
"2024-10-15 23:25:11,162 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies\n",
"2024-10-15 23:25:13,130 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:25:13,431 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library \"nireports\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:18,323 nipype.workflow IMPORTANT:\n",
"\t Running fMRIPrep version 24.1.0\n",
"\n",
" License NOTICE ##################################################\n",
" fMRIPrep 24.1.0\n",
" Copyright The NiPreps Developers.\n",
" \n",
" This product includes software developed by\n",
" the NiPreps Community (https://nipreps.org/).\n",
" \n",
" Portions of this software were developed at the Department of\n",
" Psychology at Stanford University, Stanford, CA, US.\n",
" \n",
" This software is also distributed as a Docker container image.\n",
" The bootstrapping file for the image (\"Dockerfile\") is licensed\n",
" under the MIT License.\n",
" \n",
" This software may be distributed through an add-on package called\n",
" \"Docker Wrapper\" that is under the BSD 3-clause License.\n",
" #################################################################\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:18,323 [IMPORTANT] Running fMRIPrep version 24.1.0\n",
"\n",
" License NOTICE ##################################################\n",
" fMRIPrep 24.1.0\n",
" Copyright The NiPreps Developers.\n",
" \n",
" This product includes software developed by\n",
" the NiPreps Community (https://nipreps.org/).\n",
" \n",
" Portions of this software were developed at the Department of\n",
" Psychology at Stanford University, Stanford, CA, US.\n",
" \n",
" This software is also distributed as a Docker container image.\n",
" The bootstrapping file for the image (\"Dockerfile\") is licensed\n",
" under the MIT License.\n",
" \n",
" This software may be distributed through an add-on package called\n",
" \"Docker Wrapper\" that is under the BSD 3-clause License.\n",
" #################################################################\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:18,365 nipype.workflow IMPORTANT:\n",
"\t Building fMRIPrep's workflow:\n",
" * BIDS dataset path: /home/jovyan/example-notebooks/books/functional_imaging/ds000102.\n",
" * Participant list: ['08'].\n",
" * Run identifier: 20241015-232429_15780f30-1c17-4b2e-8c7c-502ef33980db.\n",
" * Output spaces: T1w MNI152NLin2009cAsym:res-native fsaverage:den-164k fsnative.\n",
" * Pre-run FreeSurfer's SUBJECTS_DIR: /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-freesurfer-dir.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:18,365 [IMPORTANT] Building fMRIPrep's workflow:\n",
" * BIDS dataset path: /home/jovyan/example-notebooks/books/functional_imaging/ds000102.\n",
" * Participant list: ['08'].\n",
" * Run identifier: 20241015-232429_15780f30-1c17-4b2e-8c7c-502ef33980db.\n",
" * Output spaces: T1w MNI152NLin2009cAsym:res-native fsaverage:den-164k fsnative.\n",
" * Pre-run FreeSurfer's SUBJECTS_DIR: /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-freesurfer-dir.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:20,373 nipype.workflow INFO:\n",
"\t ANAT Stage 1: Adding template workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:20,373 [ INFO] ANAT Stage 1: Adding template workflow\n",
"2024-10-15 23:25:22,541 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:25:22,542 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,18 nipype.workflow INFO:\n",
"\t ANAT Stage 2: Preparing brain extraction workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,018 [ INFO] ANAT Stage 2: Preparing brain extraction workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,262 nipype.workflow INFO:\n",
"\t ANAT Stage 3: Preparing segmentation workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,262 [ INFO] ANAT Stage 3: Preparing segmentation workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,279 nipype.workflow INFO:\n",
"\t ANAT Stage 4: Preparing normalization workflow for ['MNI152NLin2009cAsym']\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,279 [ INFO] ANAT Stage 4: Preparing normalization workflow for ['MNI152NLin2009cAsym']\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,308 nipype.workflow INFO:\n",
"\t ANAT Stage 5: Preparing surface reconstruction workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,308 [ INFO] ANAT Stage 5: Preparing surface reconstruction workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,362 nipype.workflow INFO:\n",
"\t ANAT Stage 6: Preparing mask refinement workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,362 [ INFO] ANAT Stage 6: Preparing mask refinement workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,367 nipype.workflow INFO:\n",
"\t ANAT No T2w images provided - skipping Stage 7\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,367 [ INFO] ANAT No T2w images provided - skipping Stage 7\n",
"2024-10-15 23:25:23,367 [ INFO] ANAT Stage 8: Creating GIFTI surfaces for ['white', 'pial', 'midthickness', 'sphere_reg', 'sphere']\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,367 nipype.workflow INFO:\n",
"\t ANAT Stage 8: Creating GIFTI surfaces for ['white', 'pial', 'midthickness', 'sphere_reg', 'sphere']\n",
"241015-23:25:23,408 nipype.workflow INFO:\n",
"\t ANAT Stage 8: Creating GIFTI metrics for ['thickness', 'sulc']\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,408 [ INFO] ANAT Stage 8: Creating GIFTI metrics for ['thickness', 'sulc']\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,425 nipype.workflow INFO:\n",
"\t ANAT Stage 8a: Creating cortical ribbon mask\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,425 [ INFO] ANAT Stage 8a: Creating cortical ribbon mask\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,434 nipype.workflow INFO:\n",
"\t ANAT Stage 9: Creating fsLR registration sphere\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,434 [ INFO] ANAT Stage 9: Creating fsLR registration sphere\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,450 nipype.workflow INFO:\n",
"\t ANAT Stage 10: Creating MSM-Sulc registration sphere\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,450 [ INFO] ANAT Stage 10: Creating MSM-Sulc registration sphere\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:23,947 nipype.workflow INFO:\n",
"\t No single-band-reference found for sub-08_task-flanker_run-1_bold.nii.gz.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:23,947 [ INFO] No single-band-reference found for sub-08_task-flanker_run-1_bold.nii.gz.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,223 nipype.workflow INFO:\n",
"\t Stage 1: Adding HMC boldref workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,223 [ INFO] Stage 1: Adding HMC boldref workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,250 nipype.workflow INFO:\n",
"\t Stage 2: Adding motion correction workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,250 [ INFO] Stage 2: Adding motion correction workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,288 nipype.workflow INFO:\n",
"\t Stage 3: Adding coregistration boldref workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,288 [ INFO] Stage 3: Adding coregistration boldref workflow\n",
"2024-10-15 23:25:24,290 [ WARNING] WARNING: niworkflows.interfaces.nibabel.BinaryDilation is deprecated in favor of\n",
"niworkflows.interfaces.morphology.BinaryDilation. Please validate that\n",
"interface for your use case and switch.\n",
"\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,753 nipype.workflow INFO:\n",
"\t No single-band-reference found for sub-08_task-flanker_run-2_bold.nii.gz.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,753 [ INFO] No single-band-reference found for sub-08_task-flanker_run-2_bold.nii.gz.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,858 nipype.workflow INFO:\n",
"\t Stage 1: Adding HMC boldref workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,858 [ INFO] Stage 1: Adding HMC boldref workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,871 nipype.workflow INFO:\n",
"\t Stage 2: Adding motion correction workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,871 [ INFO] Stage 2: Adding motion correction workflow\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:24,882 nipype.workflow INFO:\n",
"\t Stage 3: Adding coregistration boldref workflow\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:24,882 [ INFO] Stage 3: Adding coregistration boldref workflow\n",
"2024-10-15 23:25:24,884 [ WARNING] WARNING: niworkflows.interfaces.nibabel.BinaryDilation is deprecated in favor of\n",
"niworkflows.interfaces.morphology.BinaryDilation. Please validate that\n",
"interface for your use case and switch.\n",
"\n",
"2024-10-15 23:25:31,379 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies\n",
"2024-10-15 23:25:31,720 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:25:31,888 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library \"nireports\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:25:33,142 nipype.workflow INFO:\n",
"\t fMRIPrep workflow graph with 580 nodes built successfully.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:25:33,142 [ INFO] fMRIPrep workflow graph with 580 nodes built successfully.\n",
"2024-10-15 23:25:39,386 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:25:39,580 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:25:59,298 [ WARNING] WARNING: SOCKS support in urllib3 requires the installation of optional dependencies: specifically, PySocks. For more information, see https://urllib3.readthedocs.io/en/latest/advanced-usage.html#socks-proxies\n",
"2024-10-15 23:25:59,614 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:25:59,770 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:26:05,628 [ WARNING] WARNING: sentry_sdk.configure_scope is deprecated and will be removed in the next major version. Please consult our migration guide to learn how to migrate to the new API: https://docs.sentry.io/platforms/python/migration/1.x-to-2.x#scope-configuring\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:06,865 nipype.workflow IMPORTANT:\n",
"\t fMRIPrep started!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:06,865 [IMPORTANT] fMRIPrep started!\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:09,448 nipype.workflow INFO:\n",
"\t Workflow fmriprep_24_1_wf settings: ['check', 'execution', 'logging', 'monitoring']\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:09,448 [ INFO] Workflow fmriprep_24_1_wf settings: ['check', 'execution', 'logging', 'monitoring']\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:10,0 nipype.workflow INFO:\n",
"\t Running in parallel.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:10,000 [ INFO] Running in parallel.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:10,4 nipype.workflow WARNING:\n",
"\t Some nodes exceed the total amount of memory available (10.00GB).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:10,004 [ WARNING] Some nodes exceed the total amount of memory available (10.00GB).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:10,19 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:10,019 [ INFO] [MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:10,374 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:10,374 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:10,377 nipype.workflow INFO:\n",
"\t [Node] Executing \"fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:10,377 [ INFO] [Node] Executing \"fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,148 nipype.workflow INFO:\n",
"\t [Node] Finished \"fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\", elapsed time 2.762988s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,148 [ INFO] [Node] Finished \"fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db\", elapsed time 2.762988s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,152 nipype.workflow INFO:\n",
"\t [Job 0] Completed (fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,152 [ INFO] [Job 0] Completed (fmriprep_24_1_wf.fsdir_run_20241015_232429_15780f30_1c17_4b2e_8c7c_502ef33980db).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,471 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.about\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/about\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,471 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.about\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/about\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,477 nipype.workflow INFO:\n",
"\t [Node] Executing \"about\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,477 [ INFO] [Node] Executing \"about\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,478 nipype.workflow INFO:\n",
"\t [Node] Finished \"about\", elapsed time 0.000432s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,478 [ INFO] [Node] Finished \"about\", elapsed time 0.000432s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,481 nipype.workflow INFO:\n",
"\t [Job 2] Completed (fmriprep_24_1_wf.sub_08_wf.about).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,481 [ INFO] [Job 2] Completed (fmriprep_24_1_wf.sub_08_wf.about).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:13,838 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 17 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl\n",
" * fmriprep_24_1_wf.sub_08_wf.bidssrc\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:13,838 [ INFO] [MultiProc] Running 2 tasks, and 17 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl\n",
" * fmriprep_24_1_wf.sub_08_wf.bidssrc\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:20,232 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_tmpl\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:20,232 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_tmpl\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:20,237 nipype.workflow INFO:\n",
"\t [Node] Executing \"res_tmpl\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:20,237 [ INFO] [Node] Executing \"res_tmpl\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:21,277 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bidssrc\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bidssrc\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:21,277 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bidssrc\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bidssrc\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:21,279 nipype.workflow INFO:\n",
"\t [Node] Executing \"bidssrc\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:21,279 [ INFO] [Node] Executing \"bidssrc\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"t2w\" images found for sub-08\n",
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"flair\" images found for sub-08\n",
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"fmap\" images found for sub-08\n",
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"sbref\" images found for sub-08\n",
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"roi\" images found for sub-08\n",
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"pet\" images found for sub-08\n",
"241015-23:26:21,287 nipype.interface INFO:\n",
"\t No \"asl\" images found for sub-08\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:21,287 [ INFO] No \"t2w\" images found for sub-08\n",
"2024-10-15 23:26:21,287 [ INFO] No \"flair\" images found for sub-08\n",
"2024-10-15 23:26:21,287 [ INFO] No \"fmap\" images found for sub-08\n",
"2024-10-15 23:26:21,287 [ INFO] No \"sbref\" images found for sub-08\n",
"2024-10-15 23:26:21,287 [ INFO] No \"roi\" images found for sub-08\n",
"2024-10-15 23:26:21,287 [ INFO] No \"pet\" images found for sub-08\n",
"2024-10-15 23:26:21,287 [ INFO] No \"asl\" images found for sub-08\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:21,288 nipype.workflow INFO:\n",
"\t [Node] Finished \"bidssrc\", elapsed time 0.000749s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:21,288 [ INFO] [Node] Finished \"bidssrc\", elapsed time 0.000749s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:21,839 nipype.workflow INFO:\n",
"\t [Job 1] Completed (fmriprep_24_1_wf.sub_08_wf.bidssrc).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:21,839 [ INFO] [Job 1] Completed (fmriprep_24_1_wf.sub_08_wf.bidssrc).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:21,844 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 20 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:21,844 [ INFO] [MultiProc] Running 1 tasks, and 20 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:22,134 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/full_wm\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:22,134 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/full_wm\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:22,138 nipype.workflow INFO:\n",
"\t [Node] Executing \"full_wm\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:22,138 [ INFO] [Node] Executing \"full_wm\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:23,49 nipype.workflow INFO:\n",
"\t [Node] Finished \"res_tmpl\", elapsed time 2.804299s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:23,049 [ INFO] [Node] Finished \"res_tmpl\", elapsed time 2.804299s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:23,236 nipype.workflow INFO:\n",
"\t [Node] Finished \"full_wm\", elapsed time 1.097074s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:23,236 [ INFO] [Node] Finished \"full_wm\", elapsed time 1.097074s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:23,839 nipype.workflow INFO:\n",
"\t [Job 3] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:23,839 [ INFO] [Job 3] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_tmpl).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:23,842 nipype.workflow INFO:\n",
"\t [Job 4] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:23,842 [ INFO] [Job 4] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.full_wm).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:23,845 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:23,845 [ INFO] [MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:24,185 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/val_bold\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:24,185 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/val_bold\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:24,188 nipype.workflow INFO:\n",
"\t [Node] Executing \"val_bold\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:24,188 [ INFO] [Node] Executing \"val_bold\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:24,277 nipype.workflow INFO:\n",
"\t [Node] Finished \"val_bold\", elapsed time 0.08823s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:24,277 [ INFO] [Node] Finished \"val_bold\", elapsed time 0.08823s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:24,329 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_tmpl\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:24,329 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_tmpl\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:24,331 nipype.workflow INFO:\n",
"\t [Node] Executing \"lap_tmpl\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:24,331 [ INFO] [Node] Executing \"lap_tmpl\" \n",
"2024-10-15 23:26:24,583 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:26:24,584 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:25,841 nipype.workflow INFO:\n",
"\t [Job 6] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:25,841 [ INFO] [Job 6] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.val_bold).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:25,845 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:25,845 [ INFO] [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:26,174 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/get_dummy\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:26,174 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/get_dummy\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:26,177 nipype.workflow INFO:\n",
"\t [Node] Executing \"get_dummy\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:26,177 [ INFO] [Node] Executing \"get_dummy\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:27,283 nipype.workflow INFO:\n",
"\t [Node] Finished \"get_dummy\", elapsed time 1.104616s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:27,283 [ INFO] [Node] Finished \"get_dummy\", elapsed time 1.104616s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:27,841 nipype.workflow INFO:\n",
"\t [Job 7] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:27,841 [ INFO] [Job 7] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:27,845 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 19 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:27,845 [ INFO] [MultiProc] Running 1 tasks, and 19 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:28,139 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:28,139 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:28,142 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:28,142 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:28,143 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000407s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:28,143 [ INFO] [Node] Finished \"sources\", elapsed time 0.000407s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:29,841 nipype.workflow INFO:\n",
"\t [Job 8] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:29,841 [ INFO] [Job 8] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:29,846 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:29,846 [ INFO] [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:30,213 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:30,213 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:30,218 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:30,218 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:30,220 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000599s.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:30,220 [ INFO] [Node] Finished \"sources\", elapsed time 0.000599s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:31,842 nipype.workflow INFO:\n",
"\t [Job 9] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:31,842 [ INFO] [Job 9] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:31,847 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:31,847 [ INFO] [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:32,191 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:32,191 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:32,196 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:32,196 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:32,198 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000971s.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:32,198 [ INFO] [Node] Finished \"sources\", elapsed time 0.000971s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:33,841 nipype.workflow INFO:\n",
"\t [Job 10] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:33,841 [ INFO] [Job 10] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:33,845 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:33,845 [ INFO] [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:34,169 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/bold_source\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:34,169 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/bold_source\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:34,172 nipype.workflow INFO:\n",
"\t [Node] Executing \"bold_source\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:34,172 [ INFO] [Node] Executing \"bold_source\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:34,173 nipype.workflow INFO:\n",
"\t [Node] Finished \"bold_source\", elapsed time 0.000436s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:34,173 [ INFO] [Node] Finished \"bold_source\", elapsed time 0.000436s.\n",
"2024-10-15 23:26:34,751 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:26:34,752 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:35,843 nipype.workflow INFO:\n",
"\t [Job 11] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:35,843 [ INFO] [Job 11] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.bold_source).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:35,847 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:35,847 [ INFO] [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:36,217 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/val_bold\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:36,217 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/val_bold\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:36,220 nipype.workflow INFO:\n",
"\t [Node] Executing \"val_bold\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:36,220 [ INFO] [Node] Executing \"val_bold\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:36,310 nipype.workflow INFO:\n",
"\t [Node] Finished \"val_bold\", elapsed time 0.089257s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:36,310 [ INFO] [Node] Finished \"val_bold\", elapsed time 0.089257s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:37,529 nipype.workflow INFO:\n",
"\t [Node] Finished \"lap_tmpl\", elapsed time 12.835325s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:37,529 [ INFO] [Node] Finished \"lap_tmpl\", elapsed time 12.835325s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:37,843 nipype.workflow INFO:\n",
"\t [Job 5] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:37,843 [ INFO] [Job 5] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_tmpl).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:37,846 nipype.workflow INFO:\n",
"\t [Job 12] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:37,846 [ INFO] [Job 12] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.val_bold).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:37,849 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:37,849 [ INFO] [MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:38,215 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/get_dummy\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:38,215 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/get_dummy\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:38,219 nipype.workflow INFO:\n",
"\t [Node] Executing \"get_dummy\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:38,219 [ INFO] [Node] Executing \"get_dummy\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:39,235 nipype.workflow INFO:\n",
"\t [Node] Finished \"get_dummy\", elapsed time 1.014578s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:39,235 [ INFO] [Node] Finished \"get_dummy\", elapsed time 1.014578s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:39,843 nipype.workflow INFO:\n",
"\t [Job 13] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:39,843 [ INFO] [Job 13] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.get_dummy).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:39,847 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:39,847 [ INFO] [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:40,164 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:40,164 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:40,169 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:40,169 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:40,171 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000361s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:40,171 [ INFO] [Node] Finished \"sources\", elapsed time 0.000361s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:40,692 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:40,692 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:40,695 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:40,695 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:40,697 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000394s.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:40,697 [ INFO] [Node] Finished \"sources\", elapsed time 0.000394s.\n"
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},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:41,844 nipype.workflow INFO:\n",
"\t [Job 14] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:41,844 [ INFO] [Job 14] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:41,846 nipype.workflow INFO:\n",
"\t [Job 15] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources).\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:41,846 [ INFO] [Job 15] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:41,849 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:41,849 [ INFO] [MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:42,217 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:42,217 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:42,218 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/bold_source\".\n",
"241015-23:26:42,221 nipype.workflow INFO:\n",
"\t [Node] Executing \"bold_source\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:42,218 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/bold_source\".\n",
"2024-10-15 23:26:42,221 [ INFO] [Node] Executing \"bold_source\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:42,223 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n",
"241015-23:26:42,223 nipype.workflow INFO:\n",
"\t [Node] Finished \"bold_source\", elapsed time 0.000915s.\n",
"241015-23:26:42,225 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000537s.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:42,223 [ INFO] [Node] Executing \"sources\" \n",
"2024-10-15 23:26:42,223 [ INFO] [Node] Finished \"bold_source\", elapsed time 0.000915s.\n",
"2024-10-15 23:26:42,225 [ INFO] [Node] Finished \"sources\", elapsed time 0.000537s.\n"
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},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:43,844 nipype.workflow INFO:\n",
"\t [Job 16] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:43,844 [ INFO] [Job 16] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.sources).\n"
]
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{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:43,846 nipype.workflow INFO:\n",
"\t [Job 17] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:43,846 [ INFO] [Job 17] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.bold_source).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:43,850 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:43,850 [ INFO] [MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,199 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/split_desc\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,199 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/split_desc\".\n"
]
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{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,201 nipype.workflow INFO:\n",
"\t [Node] Executing \"split_desc\" \n",
"241015-23:26:44,203 nipype.workflow INFO:\n",
"\t [Node] Finished \"split_desc\", elapsed time 0.000223s.\n"
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{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,201 [ INFO] [Node] Executing \"split_desc\" \n",
"2024-10-15 23:26:44,203 [ INFO] [Node] Finished \"split_desc\", elapsed time 0.000223s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,205 nipype.workflow INFO:\n",
"\t [Job 18] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,205 [ INFO] [Job 18] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.split_desc).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,501 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,501 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,504 nipype.workflow INFO:\n",
"\t [Node] Executing \"spacesource\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,504 [ INFO] [Node] Executing \"spacesource\" \n"
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},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,506 nipype.workflow INFO:\n",
"\t [Node] Finished \"spacesource\", elapsed time 0.000283s.\n",
"241015-23:26:44,508 nipype.workflow INFO:\n",
"\t [Job 19] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,506 [ INFO] [Node] Finished \"spacesource\", elapsed time 0.000283s.\n",
"2024-10-15 23:26:44,508 [ INFO] [Job 19] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.spacesource).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,817 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,817 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/spacesource\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,820 nipype.workflow INFO:\n",
"\t [Node] Executing \"spacesource\" \n",
"241015-23:26:44,821 nipype.workflow INFO:\n",
"\t [Node] Finished \"spacesource\", elapsed time 0.000234s.\n"
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},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,820 [ INFO] [Node] Executing \"spacesource\" \n",
"2024-10-15 23:26:44,821 [ INFO] [Node] Finished \"spacesource\", elapsed time 0.000234s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:44,823 nipype.workflow INFO:\n",
"\t [Job 20] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:44,823 [ INFO] [Job 20] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.spacesource).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,132 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bids_info\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bids_info\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,132 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bids_info\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bids_info\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,137 nipype.workflow INFO:\n",
"\t [Node] Executing \"bids_info\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,137 [ INFO] [Node] Executing \"bids_info\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,142 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_ref_dimensions\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,142 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_ref_dimensions\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,148 nipype.workflow INFO:\n",
"\t [Node] Executing \"anat_ref_dimensions\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,148 [ INFO] [Node] Executing \"anat_ref_dimensions\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,152 nipype.workflow INFO:\n",
"\t [Node] Finished \"bids_info\", elapsed time 0.013513s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,152 [ INFO] [Node] Finished \"bids_info\", elapsed time 0.013513s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,667 nipype.workflow INFO:\n",
"\t [Node] Finished \"anat_ref_dimensions\", elapsed time 0.517631s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,667 [ INFO] [Node] Finished \"anat_ref_dimensions\", elapsed time 0.517631s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,844 nipype.workflow INFO:\n",
"\t [Job 21] Completed (fmriprep_24_1_wf.sub_08_wf.bids_info).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,844 [ INFO] [Job 21] Completed (fmriprep_24_1_wf.sub_08_wf.bids_info).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,847 nipype.workflow INFO:\n",
"\t [Job 22] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,847 [ INFO] [Job 22] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_ref_dimensions).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:45,851 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:45,851 [ INFO] [MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,226 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.ds_report_about\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_about\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,226 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.ds_report_about\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_about\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,234 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_report_about\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,234 [ INFO] [Node] Executing \"ds_report_about\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,253 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_report_about\", elapsed time 0.018033s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,253 [ INFO] [Node] Finished \"ds_report_about\", elapsed time 0.018033s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,256 nipype.workflow INFO:\n",
"\t [Job 23] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_about).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,256 [ INFO] [Job 23] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_about).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,558 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,558 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,561 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_tmpl\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,561 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_tmpl\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,566 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_report_validation\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,566 [ INFO] [Node] Executing \"ds_report_validation\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,566 nipype.workflow INFO:\n",
"\t [Node] Executing \"mrg_tmpl\" \n",
"241015-23:26:46,567 nipype.workflow INFO:\n",
"\t [Node] Finished \"mrg_tmpl\", elapsed time 0.000395s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,566 [ INFO] [Node] Executing \"mrg_tmpl\" \n",
"2024-10-15 23:26:46,567 [ INFO] [Node] Finished \"mrg_tmpl\", elapsed time 0.000395s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,580 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_report_validation\", elapsed time 0.012721s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,580 [ INFO] [Node] Finished \"ds_report_validation\", elapsed time 0.012721s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,582 nipype.workflow INFO:\n",
"\t [Job 25] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,582 [ INFO] [Job 25] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,909 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,909 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:46,918 nipype.workflow INFO:\n",
"\t [Node] Executing \"gen_avg\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:46,918 [ INFO] [Node] Executing \"gen_avg\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:47,844 nipype.workflow INFO:\n",
"\t [Job 24] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:47,844 [ INFO] [Job 24] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_tmpl).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:47,849 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:47,849 [ INFO] [MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,231 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,231 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,235 nipype.workflow INFO:\n",
"\t [Node] Executing \"calc_dummy_scans\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,235 [ INFO] [Node] Executing \"calc_dummy_scans\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,237 nipype.workflow INFO:\n",
"\t [Node] Finished \"calc_dummy_scans\", elapsed time 0.000635s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,237 [ INFO] [Node] Finished \"calc_dummy_scans\", elapsed time 0.000635s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,239 nipype.workflow INFO:\n",
"\t [Job 27] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,239 [ INFO] [Job 27] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,543 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/validate_bold\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,543 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/validate_bold\".\n",
"2024-10-15 23:26:48,544 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:26:48,545 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:26:48,546 [ INFO] [Node] Executing \"validate_bold\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,546 nipype.workflow INFO:\n",
"\t [Node] Executing \"validate_bold\" \n",
"241015-23:26:48,570 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:48.570804:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]\n",
"241015-23:26:48,571 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:48.570804:++ Authored by: RW Cox\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,570 [ INFO] stderr 2024-10-15T23:26:48.570804:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]\n",
"2024-10-15 23:26:48,571 [ INFO] stderr 2024-10-15T23:26:48.570804:++ Authored by: RW Cox\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,574 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:48.574726:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-1_bold_sliced.nii.gz to FLOAT32\n",
"241015-23:26:48,574 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:48.574726: Warnings of this type will be muted for this session.\n",
"241015-23:26:48,574 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:48.574726: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,574 [ INFO] stderr 2024-10-15T23:26:48.574726:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-1_bold_sliced.nii.gz to FLOAT32\n",
"2024-10-15 23:26:48,574 [ INFO] stderr 2024-10-15T23:26:48.574726: Warnings of this type will be muted for this session.\n",
"2024-10-15 23:26:48,574 [ INFO] stderr 2024-10-15T23:26:48.574726: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,580 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:48.580785:++ Coarse del was 10, replaced with 4\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,580 [ INFO] stderr 2024-10-15T23:26:48.580785:++ Coarse del was 10, replaced with 4\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:48,638 nipype.workflow INFO:\n",
"\t [Node] Finished \"validate_bold\", elapsed time 0.09087s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:48,638 [ INFO] [Node] Finished \"validate_bold\", elapsed time 0.09087s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:49,845 nipype.workflow INFO:\n",
"\t [Job 28] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:49,845 [ INFO] [Job 28] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.validate_bold).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:49,854 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:49,854 [ INFO] [MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:50,236 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:50,236 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/func_fit_reports_wf/ds_report_validation\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:50,243 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_report_validation\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:50,243 [ INFO] [Node] Executing \"ds_report_validation\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:50,257 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_report_validation\", elapsed time 0.012762s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:50,257 [ INFO] [Node] Finished \"ds_report_validation\", elapsed time 0.012762s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:50,260 nipype.workflow INFO:\n",
"\t [Job 29] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:50,260 [ INFO] [Job 29] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.func_fit_reports_wf.ds_report_validation).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:50,668 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:50,668 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:50,679 nipype.workflow INFO:\n",
"\t [Node] Executing \"gen_avg\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:50,679 [ INFO] [Node] Executing \"gen_avg\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:51,848 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 14 jobs ready. Free memory (GB): 8.00/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:51,848 [ INFO] [MultiProc] Running 2 tasks, and 14 jobs ready. Free memory (GB): 8.00/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n",
"2024-10-15 23:26:52,056 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:26:52,056 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:52,73 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:52.073803:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:52,073 [ INFO] stderr 2024-10-15T23:26:52.073803:++ 3dvolreg: AFNI version=AFNI_24.2.06 (Sep 11 2024) [64-bit]\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:52,74 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:52.073803:++ Authored by: RW Cox\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.073803:++ Authored by: RW Cox\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:26:52,74 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:52.074596:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-2_bold_sliced.nii.gz to FLOAT32\n",
"241015-23:26:52,74 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:52.074596: Warnings of this type will be muted for this session.\n",
"241015-23:26:52,74 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:52.074596: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.\n",
"241015-23:26:52,75 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:26:52.075093:++ Coarse del was 10, replaced with 4\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.074596:** AFNI converts NIFTI_datatype=4 (INT16) in file /home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/gen_avg/sub-08_task-flanker_run-2_bold_sliced.nii.gz to FLOAT32\n",
"2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.074596: Warnings of this type will be muted for this session.\n",
"2024-10-15 23:26:52,074 [ INFO] stderr 2024-10-15T23:26:52.074596: Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.\n",
"2024-10-15 23:26:52,075 [ INFO] stderr 2024-10-15T23:26:52.075093:++ Coarse del was 10, replaced with 4\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:05,36 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:27:05.035900:++ Max displacement in automask = 0.12 (mm) at sub-brick 18\n",
"241015-23:27:05,36 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:27:05.035900:++ Max delta displ in automask = 0.10 (mm) at sub-brick 5\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:05,036 [ INFO] stderr 2024-10-15T23:27:05.035900:++ Max displacement in automask = 0.12 (mm) at sub-brick 18\n",
"2024-10-15 23:27:05,036 [ INFO] stderr 2024-10-15T23:27:05.035900:++ Max delta displ in automask = 0.10 (mm) at sub-brick 5\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:07,21 nipype.workflow INFO:\n",
"\t [Node] Finished \"gen_avg\", elapsed time 20.101864s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:07,021 [ INFO] [Node] Finished \"gen_avg\", elapsed time 20.101864s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:07,849 nipype.workflow INFO:\n",
"\t [Job 26] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:07,849 [ INFO] [Job 26] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:07,853 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:07,853 [ INFO] [MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,205 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,205 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/hmc_boldref_wf/calc_dummy_scans\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,210 nipype.workflow INFO:\n",
"\t [Node] Executing \"calc_dummy_scans\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,210 [ INFO] [Node] Executing \"calc_dummy_scans\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,212 nipype.workflow INFO:\n",
"\t [Node] Finished \"calc_dummy_scans\", elapsed time 0.000776s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,212 [ INFO] [Node] Finished \"calc_dummy_scans\", elapsed time 0.000776s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,215 nipype.workflow INFO:\n",
"\t [Job 31] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,215 [ INFO] [Job 31] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.calc_dummy_scans).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,528 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/validate_bold\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,528 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/validate_bold\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,532 nipype.workflow INFO:\n",
"\t [Node] Executing \"validate_bold\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,532 [ INFO] [Node] Executing \"validate_bold\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:08,621 nipype.workflow INFO:\n",
"\t [Node] Finished \"validate_bold\", elapsed time 0.087389s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:08,621 [ INFO] [Node] Finished \"validate_bold\", elapsed time 0.087389s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:09,850 nipype.workflow INFO:\n",
"\t [Job 32] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:09,850 [ INFO] [Job 32] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.validate_bold).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:09,854 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:09,854 [ INFO] [MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 9.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,255 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/tf_select\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,255 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/tf_select\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,259 nipype.workflow INFO:\n",
"\t [Node] Executing \"tf_select\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,259 [ INFO] [Node] Executing \"tf_select\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,440 nipype.workflow INFO:\n",
"\t [Node] Finished \"tf_select\", elapsed time 0.179621s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,440 [ INFO] [Node] Finished \"tf_select\", elapsed time 0.179621s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,442 nipype.workflow INFO:\n",
"\t [Job 33] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,442 [ INFO] [Job 33] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.tf_select).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,788 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/fmt_cohort\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,788 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/register_template_wf/_template_MNI152NLin2009cAsym/fmt_cohort\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,792 nipype.workflow INFO:\n",
"\t [Node] Executing \"fmt_cohort\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,792 [ INFO] [Node] Executing \"fmt_cohort\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,793 nipype.workflow INFO:\n",
"\t [Node] Finished \"fmt_cohort\", elapsed time 0.000689s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,793 [ INFO] [Node] Finished \"fmt_cohort\", elapsed time 0.000689s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:10,795 nipype.workflow INFO:\n",
"\t [Job 34] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:10,795 [ INFO] [Job 34] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.register_template_wf.fmt_cohort).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,115 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,115 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,118 nipype.workflow INFO:\n",
"\t [Node] Executing \"gen_tplid\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,118 [ INFO] [Node] Executing \"gen_tplid\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,120 nipype.workflow INFO:\n",
"\t [Node] Finished \"gen_tplid\", elapsed time 0.00067s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,120 [ INFO] [Node] Finished \"gen_tplid\", elapsed time 0.00067s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,122 nipype.workflow INFO:\n",
"\t [Job 35] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,122 [ INFO] [Job 35] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.gen_tplid).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,433 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,433 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,437 nipype.workflow INFO:\n",
"\t [Node] Executing \"select_tpl\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,437 [ INFO] [Node] Executing \"select_tpl\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,618 nipype.workflow INFO:\n",
"\t [Node] Finished \"select_tpl\", elapsed time 0.179943s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,618 [ INFO] [Node] Finished \"select_tpl\", elapsed time 0.179943s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,620 nipype.workflow INFO:\n",
"\t [Job 36] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,620 [ INFO] [Job 36] Completed (fmriprep_24_1_wf.sub_08_wf.template_iterator_wf.select_tpl).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,926 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,926 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_tplid\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,929 nipype.workflow INFO:\n",
"\t [Node] Executing \"gen_tplid\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,929 [ INFO] [Node] Executing \"gen_tplid\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,931 nipype.workflow INFO:\n",
"\t [Node] Finished \"gen_tplid\", elapsed time 0.000554s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,931 [ INFO] [Node] Finished \"gen_tplid\", elapsed time 0.000554s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:11,933 nipype.workflow INFO:\n",
"\t [Job 37] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:11,933 [ INFO] [Job 37] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.gen_tplid).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,221 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,221 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/template_iterator_wf/_in_tuple_MNI152NLin2009cAsym.resnative/select_tpl\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,224 nipype.workflow INFO:\n",
"\t [Node] Executing \"select_tpl\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,224 [ INFO] [Node] Executing \"select_tpl\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,308 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:27:12.307938:++ Max displacement in automask = 1.01 (mm) at sub-brick 17\n",
"241015-23:27:12,308 nipype.interface INFO:\n",
"\t stderr 2024-10-15T23:27:12.307938:++ Max delta displ in automask = 0.39 (mm) at sub-brick 17\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,308 [ INFO] stderr 2024-10-15T23:27:12.307938:++ Max displacement in automask = 1.01 (mm) at sub-brick 17\n",
"2024-10-15 23:27:12,308 [ INFO] stderr 2024-10-15T23:27:12.307938:++ Max delta displ in automask = 0.39 (mm) at sub-brick 17\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,369 nipype.workflow INFO:\n",
"\t [Node] Finished \"select_tpl\", elapsed time 0.144077s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,369 [ INFO] [Node] Finished \"select_tpl\", elapsed time 0.144077s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,371 nipype.workflow INFO:\n",
"\t [Job 38] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,371 [ INFO] [Job 38] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.template_iterator_wf.select_tpl).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,658 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.summary\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/summary\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,658 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.summary\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/summary\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,664 nipype.workflow INFO:\n",
"\t [Node] Executing \"summary\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,664 [ INFO] [Node] Executing \"summary\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,668 nipype.workflow INFO:\n",
"\t [Node] Finished \"summary\", elapsed time 0.002818s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,668 [ INFO] [Node] Finished \"summary\", elapsed time 0.002818s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,669 nipype.workflow INFO:\n",
"\t [Job 39] Completed (fmriprep_24_1_wf.sub_08_wf.summary).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,669 [ INFO] [Job 39] Completed (fmriprep_24_1_wf.sub_08_wf.summary).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,931 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/fs_isrunning\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,931 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/fs_isrunning\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,932 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 8.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,932 [ INFO] [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 8.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:12,937 nipype.workflow INFO:\n",
"\t [Node] Executing \"fs_isrunning\" \n",
"241015-23:27:12,940 nipype.workflow INFO:\n",
"\t [Node] Finished \"fs_isrunning\", elapsed time 0.001409s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:12,937 [ INFO] [Node] Executing \"fs_isrunning\" \n",
"2024-10-15 23:27:12,940 [ INFO] [Node] Finished \"fs_isrunning\", elapsed time 0.001409s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:14,0 nipype.workflow INFO:\n",
"\t [Node] Finished \"gen_avg\", elapsed time 23.320179s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:14,000 [ INFO] [Node] Finished \"gen_avg\", elapsed time 23.320179s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:14,933 nipype.workflow INFO:\n",
"\t [Job 30] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:14,933 [ INFO] [Job 30] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.hmc_boldref_wf.gen_avg).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:14,935 nipype.workflow INFO:\n",
"\t [Job 40] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:14,935 [ INFO] [Job 40] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.fs_isrunning).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:14,938 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:14,938 [ INFO] [MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:15,329 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_t1w_mask_wf/raw_sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:15,329 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_t1w_mask_wf/raw_sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:15,335 nipype.workflow INFO:\n",
"\t [Node] Executing \"raw_sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:15,335 [ INFO] [Node] Executing \"raw_sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:15,337 nipype.workflow INFO:\n",
"\t [Node] Finished \"raw_sources\", elapsed time 0.000895s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:15,337 [ INFO] [Node] Finished \"raw_sources\", elapsed time 0.000895s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:15,388 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"_denoise0\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/denoise/mapflow/_denoise0\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:15,388 [ INFO] [Node] Setting-up \"_denoise0\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/denoise/mapflow/_denoise0\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:15,390 nipype.workflow INFO:\n",
"\t [Node] Executing \"_denoise0\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:15,390 [ INFO] [Node] Executing \"_denoise0\" \n",
"2024-10-15 23:27:15,626 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:27:15,626 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:16,934 nipype.workflow INFO:\n",
"\t [Job 42] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:16,934 [ INFO] [Job 42] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_t1w_mask_wf.raw_sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:16,939 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:16,939 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:17,252 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_ribbon_mask_wf/raw_sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:17,252 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_ribbon_mask_wf/raw_sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:17,256 nipype.workflow INFO:\n",
"\t [Node] Executing \"raw_sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:17,256 [ INFO] [Node] Executing \"raw_sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:17,259 nipype.workflow INFO:\n",
"\t [Node] Finished \"raw_sources\", elapsed time 0.000847s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:17,259 [ INFO] [Node] Finished \"raw_sources\", elapsed time 0.000847s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:18,934 nipype.workflow INFO:\n",
"\t [Job 43] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:18,934 [ INFO] [Job 43] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_ribbon_mask_wf.raw_sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:18,938 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:18,938 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,250 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/t1w_conform_check\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,250 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/t1w_conform_check\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,254 nipype.workflow INFO:\n",
"\t [Node] Executing \"t1w_conform_check\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,254 [ INFO] [Node] Executing \"t1w_conform_check\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,255 nipype.workflow INFO:\n",
"\t [Node] Finished \"t1w_conform_check\", elapsed time 0.00059s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,255 [ INFO] [Node] Finished \"t1w_conform_check\", elapsed time 0.00059s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,257 nipype.workflow INFO:\n",
"\t [Job 44] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,257 [ INFO] [Job 44] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.t1w_conform_check).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,536 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/fmapref_buffer\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,536 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/fmapref_buffer\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,541 nipype.workflow INFO:\n",
"\t [Node] Executing \"fmapref_buffer\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,541 [ INFO] [Node] Executing \"fmapref_buffer\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:19,546 nipype.workflow INFO:\n",
"\t [Node] Finished \"fmapref_buffer\", elapsed time 0.00407s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:19,546 [ INFO] [Node] Finished \"fmapref_buffer\", elapsed time 0.00407s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:20,935 nipype.workflow INFO:\n",
"\t [Job 45] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:20,935 [ INFO] [Job 45] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.fmapref_buffer).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:20,939 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:20,939 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,75 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,075 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,82 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,082 [ INFO] [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,111 nipype.interface WARNING:\n",
"\t Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-hmc_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,111 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-hmc_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,242 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_boldref\", elapsed time 0.157856s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,242 [ INFO] [Node] Finished \"ds_boldref\", elapsed time 0.157856s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,245 nipype.workflow INFO:\n",
"\t [Job 46] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,245 [ INFO] [Job 46] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,662 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/mcflirt\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,662 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/mcflirt\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,668 nipype.workflow INFO:\n",
"\t [Node] Executing \"mcflirt\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,668 [ INFO] [Node] Executing \"mcflirt\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:22,937 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:22,937 [ INFO] [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:27:52,492 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:27:52,493 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:52,827 nipype.workflow INFO:\n",
"\t [Node] Finished \"mcflirt\", elapsed time 30.157369s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:52,827 [ INFO] [Node] Finished \"mcflirt\", elapsed time 30.157369s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:52,942 nipype.workflow INFO:\n",
"\t [Job 47] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:52,942 [ INFO] [Job 47] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.mcflirt).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:52,946 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:52,946 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:53,312 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/fmapref_buffer\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:53,312 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/fmapref_buffer\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:53,317 nipype.workflow INFO:\n",
"\t [Node] Executing \"fmapref_buffer\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:53,317 [ INFO] [Node] Executing \"fmapref_buffer\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:53,318 nipype.workflow INFO:\n",
"\t [Node] Finished \"fmapref_buffer\", elapsed time 0.000777s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:53,318 [ INFO] [Node] Finished \"fmapref_buffer\", elapsed time 0.000777s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:54,942 nipype.workflow INFO:\n",
"\t [Job 48] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:54,942 [ INFO] [Job 48] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.fmapref_buffer).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:54,946 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:54,946 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,294 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,294 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,302 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,302 [ INFO] [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,331 nipype.interface WARNING:\n",
"\t Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-hmc_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,331 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-hmc_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,422 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_boldref\", elapsed time 0.118382s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,422 [ INFO] [Node] Finished \"ds_boldref\", elapsed time 0.118382s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,425 nipype.workflow INFO:\n",
"\t [Job 49] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,425 [ INFO] [Job 49] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,759 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/mcflirt\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,759 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/mcflirt\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:55,766 nipype.workflow INFO:\n",
"\t [Node] Executing \"mcflirt\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:55,766 [ INFO] [Node] Executing \"mcflirt\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:27:56,945 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:27:56,945 [ INFO] [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.27/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:28:33,970 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:28:33,971 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:34,209 nipype.workflow INFO:\n",
"\t [Node] Finished \"mcflirt\", elapsed time 38.442083s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:34,209 [ INFO] [Node] Finished \"mcflirt\", elapsed time 38.442083s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:34,952 nipype.workflow INFO:\n",
"\t [Job 50] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:34,952 [ INFO] [Job 50] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.mcflirt).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:34,958 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 12 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:34,958 [ INFO] [MultiProc] Running 1 tasks, and 12 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,391 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.ds_report_summary\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_summary\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,391 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.ds_report_summary\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/ds_report_summary\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,400 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_report_summary\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,400 [ INFO] [Node] Executing \"ds_report_summary\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,417 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_report_summary\", elapsed time 0.016065s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,417 [ INFO] [Node] Finished \"ds_report_summary\", elapsed time 0.016065s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,420 nipype.workflow INFO:\n",
"\t [Job 51] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_summary).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,420 [ INFO] [Job 51] Completed (fmriprep_24_1_wf.sub_08_wf.ds_report_summary).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,822 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/ds_t1w_conform_report\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,822 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_reports_wf/ds_t1w_conform_report\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,829 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_t1w_conform_report\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,829 [ INFO] [Node] Executing \"ds_t1w_conform_report\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,843 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_t1w_conform_report\", elapsed time 0.012284s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,843 [ INFO] [Node] Finished \"ds_t1w_conform_report\", elapsed time 0.012284s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:35,845 nipype.workflow INFO:\n",
"\t [Job 53] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:35,845 [ INFO] [Job 53] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_reports_wf.ds_t1w_conform_report).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:36,232 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:36,232 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:36,238 nipype.workflow INFO:\n",
"\t [Node] Executing \"init_aff\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:36,238 [ INFO] [Node] Executing \"init_aff\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:28:36,955 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:28:36,955 [ INFO] [MultiProc] Running 2 tasks, and 9 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:31:51,215 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:31:51,216 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:51,421 nipype.workflow INFO:\n",
"\t [Node] Finished \"init_aff\", elapsed time 195.181727s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:51,421 [ INFO] [Node] Finished \"init_aff\", elapsed time 195.181727s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:52,997 nipype.workflow INFO:\n",
"\t [Job 54] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:52,997 [ INFO] [Job 54] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:53,3 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:53,003 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:53,388 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:53,388 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:53,395 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:53,395 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:53,397 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000517s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:53,397 [ INFO] [Node] Finished \"sources\", elapsed time 0.000517s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:54,997 nipype.workflow INFO:\n",
"\t [Job 55] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:54,997 [ INFO] [Job 55] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:55,2 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:55,002 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:55,502 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/fsl2itk\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:55,502 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/fsl2itk\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:55,550 nipype.workflow INFO:\n",
"\t [Node] Executing \"fsl2itk\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:55,550 [ INFO] [Node] Executing \"fsl2itk\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:55,550 nipype.interface WARNING:\n",
"\t Multithreading is deprecated. Remove the num_threads input.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:55,550 [ WARNING] Multithreading is deprecated. Remove the num_threads input.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:55,742 nipype.workflow INFO:\n",
"\t [Node] Finished \"fsl2itk\", elapsed time 0.19153s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:55,742 [ INFO] [Node] Finished \"fsl2itk\", elapsed time 0.19153s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:56,997 nipype.workflow INFO:\n",
"\t [Job 56] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:56,997 [ INFO] [Job 56] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:57,2 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:57,002 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:57,986 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/normalize_motion\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:57,986 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/bold_hmc_wf/normalize_motion\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:58,5 nipype.workflow INFO:\n",
"\t [Node] Executing \"normalize_motion\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:58,005 [ INFO] [Node] Executing \"normalize_motion\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:58,10 nipype.workflow INFO:\n",
"\t [Node] Finished \"normalize_motion\", elapsed time 0.004342s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:58,010 [ INFO] [Node] Finished \"normalize_motion\", elapsed time 0.004342s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:58,998 nipype.workflow INFO:\n",
"\t [Job 57] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:58,998 [ INFO] [Job 57] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,2 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,002 [ INFO] [MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,317 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_rmsd_header\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,317 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_rmsd_header\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,335 nipype.workflow INFO:\n",
"\t [Node] Executing \"add_rmsd_header\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,335 [ INFO] [Node] Executing \"add_rmsd_header\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,337 nipype.workflow INFO:\n",
"\t [Node] Finished \"add_rmsd_header\", elapsed time 0.001749s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,337 [ INFO] [Node] Finished \"add_rmsd_header\", elapsed time 0.001749s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,339 nipype.workflow INFO:\n",
"\t [Job 58] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,339 [ INFO] [Job 58] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,630 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,630 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/init_aff\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:31:59,637 nipype.workflow INFO:\n",
"\t [Node] Executing \"init_aff\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:31:59,637 [ INFO] [Node] Executing \"init_aff\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:32:01,1 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:32:01,001 [ INFO] [MultiProc] Running 2 tasks, and 8 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:34:48,559 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:34:48,560 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:48,743 nipype.workflow INFO:\n",
"\t [Node] Finished \"init_aff\", elapsed time 169.104528s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:48,743 [ INFO] [Node] Finished \"init_aff\", elapsed time 169.104528s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:49,36 nipype.workflow INFO:\n",
"\t [Job 59] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:49,036 [ INFO] [Job 59] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.init_aff).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:49,41 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:49,041 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:49,543 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:49,543 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:49,549 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:49,549 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:49,550 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000395s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:49,550 [ INFO] [Node] Finished \"sources\", elapsed time 0.000395s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:51,36 nipype.workflow INFO:\n",
"\t [Job 60] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:51,036 [ INFO] [Job 60] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:51,42 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:51,042 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:51,428 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/fsl2itk\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:51,428 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/fsl2itk\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:51,464 nipype.workflow INFO:\n",
"\t [Node] Executing \"fsl2itk\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:51,464 [ INFO] [Node] Executing \"fsl2itk\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:51,465 nipype.interface WARNING:\n",
"\t Multithreading is deprecated. Remove the num_threads input.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:51,465 [ WARNING] Multithreading is deprecated. Remove the num_threads input.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:51,571 nipype.workflow INFO:\n",
"\t [Node] Finished \"fsl2itk\", elapsed time 0.105607s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:51,571 [ INFO] [Node] Finished \"fsl2itk\", elapsed time 0.105607s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:53,37 nipype.workflow INFO:\n",
"\t [Job 61] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:53,037 [ INFO] [Job 61] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.fsl2itk).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:53,41 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:53,041 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:53,433 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/normalize_motion\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:53,433 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/bold_hmc_wf/normalize_motion\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:53,451 nipype.workflow INFO:\n",
"\t [Node] Executing \"normalize_motion\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:53,451 [ INFO] [Node] Executing \"normalize_motion\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:53,456 nipype.workflow INFO:\n",
"\t [Node] Finished \"normalize_motion\", elapsed time 0.004203s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:53,456 [ INFO] [Node] Finished \"normalize_motion\", elapsed time 0.004203s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,38 nipype.workflow INFO:\n",
"\t [Job 62] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,038 [ INFO] [Job 62] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.bold_hmc_wf.normalize_motion).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,43 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,043 [ INFO] [MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,440 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_rmsd_header\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,440 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_rmsd_header\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,460 nipype.workflow INFO:\n",
"\t [Node] Executing \"add_rmsd_header\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,460 [ INFO] [Node] Executing \"add_rmsd_header\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,464 nipype.workflow INFO:\n",
"\t [Node] Finished \"add_rmsd_header\", elapsed time 0.001982s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,464 [ INFO] [Node] Finished \"add_rmsd_header\", elapsed time 0.001982s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,467 nipype.workflow INFO:\n",
"\t [Job 63] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,467 [ INFO] [Job 63] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,955 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,955 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:55,967 nipype.workflow INFO:\n",
"\t [Node] Executing \"norm\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:55,967 [ INFO] [Node] Executing \"norm\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:34:57,40 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:34:57,040 [ INFO] [MultiProc] Running 2 tasks, and 7 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:35:05,166 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:05,167 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:05,383 nipype.workflow INFO:\n",
"\t [Node] Finished \"norm\", elapsed time 9.413491s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:05,383 [ INFO] [Node] Finished \"norm\", elapsed time 9.413491s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,40 nipype.workflow INFO:\n",
"\t [Job 65] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,040 [ INFO] [Job 65] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,45 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,045 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,437 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/ds_xforms\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,437 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_hmc_wf/ds_xforms\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,445 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_xforms\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,445 [ INFO] [Node] Executing \"ds_xforms\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,462 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_xforms\", elapsed time 0.015412s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,462 [ INFO] [Node] Finished \"ds_xforms\", elapsed time 0.015412s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,465 nipype.workflow INFO:\n",
"\t [Job 66] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,465 [ INFO] [Job 66] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,933 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/fdisp\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,933 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/fdisp\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,937 nipype.workflow INFO:\n",
"\t [Node] Executing \"fdisp\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,937 [ INFO] [Node] Executing \"fdisp\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:07,942 nipype.workflow INFO:\n",
"\t [Node] Finished \"fdisp\", elapsed time 0.003249s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:07,942 [ INFO] [Node] Finished \"fdisp\", elapsed time 0.003249s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,40 nipype.workflow INFO:\n",
"\t [Job 67] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,040 [ INFO] [Job 67] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.fdisp).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,46 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,046 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,416 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_motion_headers\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,416 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_motion_headers\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,420 nipype.workflow INFO:\n",
"\t [Node] Executing \"add_motion_headers\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,420 [ INFO] [Node] Executing \"add_motion_headers\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,424 nipype.workflow INFO:\n",
"\t [Node] Finished \"add_motion_headers\", elapsed time 0.003198s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,424 [ INFO] [Node] Finished \"add_motion_headers\", elapsed time 0.003198s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,426 nipype.workflow INFO:\n",
"\t [Job 68] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,426 [ INFO] [Job 68] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,793 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,793 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/norm\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:09,803 nipype.workflow INFO:\n",
"\t [Node] Executing \"norm\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:09,803 [ INFO] [Node] Executing \"norm\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:11,43 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:11,043 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:35:13,858 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:13,858 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:14,94 nipype.workflow INFO:\n",
"\t [Node] Finished \"norm\", elapsed time 4.288883s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:14,094 [ INFO] [Node] Finished \"norm\", elapsed time 4.288883s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,41 nipype.workflow INFO:\n",
"\t [Job 69] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,041 [ INFO] [Job 69] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.norm).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,45 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,045 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,422 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/ds_xforms\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,422 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_hmc_wf/ds_xforms\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,430 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_xforms\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,430 [ INFO] [Node] Executing \"ds_xforms\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,442 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_xforms\", elapsed time 0.010779s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,442 [ INFO] [Node] Finished \"ds_xforms\", elapsed time 0.010779s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,445 nipype.workflow INFO:\n",
"\t [Job 70] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,445 [ INFO] [Job 70] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_hmc_wf.ds_xforms).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,821 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/fdisp\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,821 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/fdisp\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,826 nipype.workflow INFO:\n",
"\t [Node] Executing \"fdisp\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,826 [ INFO] [Node] Executing \"fdisp\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:15,831 nipype.workflow INFO:\n",
"\t [Node] Finished \"fdisp\", elapsed time 0.003762s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:15,831 [ INFO] [Node] Finished \"fdisp\", elapsed time 0.003762s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,42 nipype.workflow INFO:\n",
"\t [Job 71] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,042 [ INFO] [Job 71] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.fdisp).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,46 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,046 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,457 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_motion_headers\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,457 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/add_motion_headers\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,462 nipype.workflow INFO:\n",
"\t [Node] Executing \"add_motion_headers\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,462 [ INFO] [Node] Executing \"add_motion_headers\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,466 nipype.workflow INFO:\n",
"\t [Node] Finished \"add_motion_headers\", elapsed time 0.003532s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,466 [ INFO] [Node] Finished \"add_motion_headers\", elapsed time 0.003532s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,469 nipype.workflow INFO:\n",
"\t [Job 72] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,469 [ INFO] [Job 72] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,880 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,880 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:17,886 nipype.workflow INFO:\n",
"\t [Node] Executing \"map_brainmask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:17,886 [ INFO] [Node] Executing \"map_brainmask\" \n",
"2024-10-15 23:35:18,836 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:18,836 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:19,45 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:19,045 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:19,153 nipype.workflow INFO:\n",
"\t [Node] Finished \"map_brainmask\", elapsed time 1.26608s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:19,153 [ INFO] [Node] Finished \"map_brainmask\", elapsed time 1.26608s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:21,43 nipype.workflow INFO:\n",
"\t [Job 74] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:21,043 [ INFO] [Job 74] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:21,48 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:21,048 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:21,500 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:21,500 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/map_brainmask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:21,506 nipype.workflow INFO:\n",
"\t [Node] Executing \"map_brainmask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:21,506 [ INFO] [Node] Executing \"map_brainmask\" \n",
"2024-10-15 23:35:22,276 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:22,276 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:22,556 nipype.workflow INFO:\n",
"\t [Node] Finished \"map_brainmask\", elapsed time 1.048219s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:22,556 [ INFO] [Node] Finished \"map_brainmask\", elapsed time 1.048219s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,44 nipype.workflow INFO:\n",
"\t [Job 75] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,044 [ INFO] [Job 75] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.map_brainmask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,48 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,048 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,430 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,430 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,435 nipype.workflow INFO:\n",
"\t [Node] Executing \"fix_header\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,435 [ INFO] [Node] Executing \"fix_header\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,505 nipype.workflow INFO:\n",
"\t [Node] Finished \"fix_header\", elapsed time 0.06871s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,505 [ INFO] [Node] Finished \"fix_header\", elapsed time 0.06871s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,507 nipype.workflow INFO:\n",
"\t [Job 79] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,507 [ INFO] [Job 79] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,801 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,801 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fix_header\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,806 nipype.workflow INFO:\n",
"\t [Node] Executing \"fix_header\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,806 [ INFO] [Node] Executing \"fix_header\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,857 nipype.workflow INFO:\n",
"\t [Node] Finished \"fix_header\", elapsed time 0.049541s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,857 [ INFO] [Node] Finished \"fix_header\", elapsed time 0.049541s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:23,860 nipype.workflow INFO:\n",
"\t [Job 80] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:23,860 [ INFO] [Job 80] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fix_header).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:25,46 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:25,046 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:25,385 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:25,385 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:25,392 nipype.workflow INFO:\n",
"\t [Node] Executing \"n4_correct\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:25,392 [ INFO] [Node] Executing \"n4_correct\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:27,47 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:27,047 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:35:27,068 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:27,069 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:27,433 nipype.workflow INFO:\n",
"\t [Node] Finished \"n4_correct\", elapsed time 2.039906s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:27,433 [ INFO] [Node] Finished \"n4_correct\", elapsed time 2.039906s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:29,44 nipype.workflow INFO:\n",
"\t [Job 83] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:29,044 [ INFO] [Job 83] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:29,48 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:29,048 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:29,337 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:29,337 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/n4_correct\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:29,343 nipype.workflow INFO:\n",
"\t [Node] Executing \"n4_correct\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:29,343 [ INFO] [Node] Executing \"n4_correct\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:31,48 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:31,048 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:35:31,149 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:31,150 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:31,466 nipype.workflow INFO:\n",
"\t [Node] Finished \"n4_correct\", elapsed time 2.121278s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:31,466 [ INFO] [Node] Finished \"n4_correct\", elapsed time 2.121278s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:33,46 nipype.workflow INFO:\n",
"\t [Job 84] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:33,046 [ INFO] [Job 84] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.n4_correct).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:33,51 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:33,051 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:33,431 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:33,431 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:33,437 nipype.workflow INFO:\n",
"\t [Node] Executing \"skullstrip_first_pass\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:33,437 [ INFO] [Node] Executing \"skullstrip_first_pass\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:35,48 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:35,048 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:35:35,534 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:35,535 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:35,774 nipype.workflow INFO:\n",
"\t [Node] Finished \"skullstrip_first_pass\", elapsed time 2.331352s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:35,774 [ INFO] [Node] Finished \"skullstrip_first_pass\", elapsed time 2.331352s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,45 nipype.workflow INFO:\n",
"\t [Job 88] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,045 [ INFO] [Job 88] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,49 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,049 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,389 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,389 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,398 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,398 [ INFO] [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,425 nipype.interface WARNING:\n",
"\t Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-coreg_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,425 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-coreg_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,524 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_boldref\", elapsed time 0.123477s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,524 [ INFO] [Node] Finished \"ds_boldref\", elapsed time 0.123477s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,527 nipype.workflow INFO:\n",
"\t [Job 89] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,527 [ INFO] [Job 89] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,861 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,861 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_first_pass\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:37,866 nipype.workflow INFO:\n",
"\t [Node] Executing \"skullstrip_first_pass\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:37,866 [ INFO] [Node] Executing \"skullstrip_first_pass\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:39,49 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:39,049 [ INFO] [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.60/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:35:39,993 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:35:39,994 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:40,214 nipype.workflow INFO:\n",
"\t [Node] Finished \"skullstrip_first_pass\", elapsed time 2.346436s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:40,214 [ INFO] [Node] Finished \"skullstrip_first_pass\", elapsed time 2.346436s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,47 nipype.workflow INFO:\n",
"\t [Job 90] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,047 [ INFO] [Job 90] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,51 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,051 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,433 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,433 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_coreg_boldref_wf/ds_boldref\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,445 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,445 [ INFO] [Node] Executing \"ds_boldref\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,474 nipype.interface WARNING:\n",
"\t Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-coreg_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,474 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-coreg_boldref.nii.gz dtype from int16 to float32\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,577 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_boldref\", elapsed time 0.12996s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,577 [ INFO] [Node] Finished \"ds_boldref\", elapsed time 0.12996s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,580 nipype.workflow INFO:\n",
"\t [Job 91] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,580 [ INFO] [Job 91] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_coreg_boldref_wf.ds_boldref).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,901 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,901 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:41,905 nipype.workflow INFO:\n",
"\t [Node] Executing \"first_dilate\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:41,905 [ INFO] [Node] Executing \"first_dilate\" \n",
"2024-10-15 23:35:41,957 [ WARNING] WARNING: `np.bool8` is a deprecated alias for `np.bool_`. (Deprecated NumPy 1.24)\n",
"2024-10-15 23:35:41,958 [ WARNING] WARNING: `np.bool8` is a deprecated alias for `np.bool_`. (Deprecated NumPy 1.24)\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:42,731 nipype.workflow INFO:\n",
"\t [Node] Finished \"first_dilate\", elapsed time 0.824911s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:42,731 [ INFO] [Node] Finished \"first_dilate\", elapsed time 0.824911s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:43,48 nipype.workflow INFO:\n",
"\t [Job 95] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:43,048 [ INFO] [Job 95] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:43,52 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:43,052 [ INFO] [MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:43,366 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldreg_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:43,366 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldreg_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:43,371 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:43,371 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:43,372 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.00044s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:43,372 [ INFO] [Node] Finished \"sources\", elapsed time 0.00044s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:45,47 nipype.workflow INFO:\n",
"\t [Job 96] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:45,047 [ INFO] [Job 96] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldreg_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:45,51 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:45,051 [ INFO] [MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:45,526 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/boldref_bold\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:45,526 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_native_wf/boldref_bold\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:45,531 nipype.workflow INFO:\n",
"\t [Node] Executing \"boldref_bold\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:45,531 [ INFO] [Node] Executing \"boldref_bold\" \n",
"2024-10-15 23:35:45,679 [ WARNING] WARNING: Reference space not set\n",
"2024-10-15 23:35:45,696 [ WARNING] WARNING: Reference space not set\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:35:47,51 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:35:47,051 [ INFO] [MultiProc] Running 2 tasks, and 6 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:06,942 nipype.workflow INFO:\n",
"\t [Node] Finished \"boldref_bold\", elapsed time 21.410239s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:06,942 [ INFO] [Node] Finished \"boldref_bold\", elapsed time 21.410239s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:07,51 nipype.workflow INFO:\n",
"\t [Job 97] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:07,051 [ INFO] [Job 97] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_native_wf.boldref_bold).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:07,55 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:07,055 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:07,430 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:07,430 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:07,453 nipype.workflow INFO:\n",
"\t [Node] Executing \"gen_ref\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:07,453 [ INFO] [Node] Executing \"gen_ref\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:09,54 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:09,054 [ INFO] [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:36:09,501 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.\n",
"2024-10-15 23:36:09,871 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.\n",
"2024-10-15 23:36:10,892 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:10,930 nipype.workflow INFO:\n",
"\t [Node] Finished \"gen_ref\", elapsed time 3.47584s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:10,930 [ INFO] [Node] Finished \"gen_ref\", elapsed time 3.47584s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:11,52 nipype.workflow INFO:\n",
"\t [Job 98] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:11,052 [ INFO] [Job 98] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_std_wf.gen_ref).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:11,56 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:11,056 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:11,452 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:11,452 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_dilate\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:11,457 nipype.workflow INFO:\n",
"\t [Node] Executing \"first_dilate\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:11,457 [ INFO] [Node] Executing \"first_dilate\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:11,755 nipype.workflow INFO:\n",
"\t [Node] Finished \"first_dilate\", elapsed time 0.296964s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:11,755 [ INFO] [Node] Finished \"first_dilate\", elapsed time 0.296964s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:13,53 nipype.workflow INFO:\n",
"\t [Job 99] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:13,053 [ INFO] [Job 99] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_dilate).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:13,58 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:13,058 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:13,372 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldreg_wf/sources\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:13,372 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldreg_wf/sources\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:13,380 nipype.workflow INFO:\n",
"\t [Node] Executing \"sources\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:13,380 [ INFO] [Node] Executing \"sources\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:13,381 nipype.workflow INFO:\n",
"\t [Node] Finished \"sources\", elapsed time 0.000385s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:13,381 [ INFO] [Node] Finished \"sources\", elapsed time 0.000385s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:15,54 nipype.workflow INFO:\n",
"\t [Job 100] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:15,054 [ INFO] [Job 100] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldreg_wf.sources).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:15,58 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:15,058 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:15,391 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/boldref_bold\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:15,391 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_native_wf/boldref_bold\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:15,399 nipype.workflow INFO:\n",
"\t [Node] Executing \"boldref_bold\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:15,399 [ INFO] [Node] Executing \"boldref_bold\" \n",
"2024-10-15 23:36:15,597 [ WARNING] WARNING: Reference space not set\n",
"2024-10-15 23:36:15,620 [ WARNING] WARNING: Reference space not set\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:17,57 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:17,057 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise\n",
"2024-10-15 23:36:21,860 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:36:21,860 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:22,4 nipype.workflow INFO:\n",
"\t [Node] Finished \"_denoise0\", elapsed time 546.131542s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:22,004 [ INFO] [Node] Finished \"_denoise0\", elapsed time 546.131542s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:23,55 nipype.workflow INFO:\n",
"\t [Job 41] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:23,055 [ INFO] [Job 41] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.denoise).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:23,60 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:23,060 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:23,516 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"_anat_conform0\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_conform/mapflow/_anat_conform0\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:23,516 [ INFO] [Node] Setting-up \"_anat_conform0\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/anat_conform/mapflow/_anat_conform0\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:23,518 nipype.workflow INFO:\n",
"\t [Node] Executing \"_anat_conform0\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:23,518 [ INFO] [Node] Executing \"_anat_conform0\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:25,58 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:25,058 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 9.09/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:26,637 nipype.workflow INFO:\n",
"\t [Node] Finished \"_anat_conform0\", elapsed time 3.11882s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:26,637 [ INFO] [Node] Finished \"_anat_conform0\", elapsed time 3.11882s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:27,56 nipype.workflow INFO:\n",
"\t [Job 52] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:27,056 [ INFO] [Job 52] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.anat_conform).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:27,60 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:27,060 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:27,417 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/get1st\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:27,417 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_template_wf/get1st\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:27,422 nipype.workflow INFO:\n",
"\t [Node] Executing \"get1st\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:27,422 [ INFO] [Node] Executing \"get1st\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:27,424 nipype.workflow INFO:\n",
"\t [Node] Finished \"get1st\", elapsed time 0.000568s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:27,424 [ INFO] [Node] Finished \"get1st\", elapsed time 0.000568s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:29,56 nipype.workflow INFO:\n",
"\t [Job 64] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:29,056 [ INFO] [Job 64] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_template_wf.get1st).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:29,61 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:29,061 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.29/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:29,459 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_validate\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:29,459 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/anat_validate\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:29,462 nipype.workflow INFO:\n",
"\t [Node] Executing \"anat_validate\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:29,462 [ INFO] [Node] Executing \"anat_validate\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:32,735 nipype.workflow INFO:\n",
"\t [Node] Finished \"boldref_bold\", elapsed time 17.33471s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:32,735 [ INFO] [Node] Finished \"boldref_bold\", elapsed time 17.33471s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:33,333 nipype.workflow INFO:\n",
"\t [Node] Finished \"anat_validate\", elapsed time 3.869044s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:33,333 [ INFO] [Node] Finished \"anat_validate\", elapsed time 3.869044s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:33,336 nipype.workflow INFO:\n",
"\t [Job 73] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:33,336 [ INFO] [Job 73] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.anat_validate).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:33,724 nipype.workflow INFO:\n",
"\t [Job 101] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:33,724 [ INFO] [Job 101] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_native_wf.boldref_bold).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:33,729 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.70/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:33,729 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 9.70/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:33,735 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:33,735 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_std_wf/_in_tuple_MNI152NLin2009cAsym.resnative/gen_ref\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:33,756 nipype.workflow INFO:\n",
"\t [Node] Executing \"gen_ref\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:33,756 [ INFO] [Node] Executing \"gen_ref\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:34,160 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"_truncate_images0\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:34,160 [ INFO] [Node] Setting-up \"_truncate_images0\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/truncate_images/mapflow/_truncate_images0\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:34,163 nipype.workflow INFO:\n",
"\t [Node] Executing \"_truncate_images0\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:34,163 [ INFO] [Node] Executing \"_truncate_images0\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:35,728 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:35,728 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 9.50/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref\n",
"2024-10-15 23:36:37,024 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.\n",
"2024-10-15 23:36:37,420 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.\n",
"2024-10-15 23:36:38,506 [ WARNING] WARNING: The behavior of affine_transform with a 1-D array supplied for the matrix parameter has changed in SciPy 0.18.0.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:38,544 nipype.workflow INFO:\n",
"\t [Node] Finished \"gen_ref\", elapsed time 4.787199s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:38,544 [ INFO] [Node] Finished \"gen_ref\", elapsed time 4.787199s.\n",
"2024-10-15 23:36:38,643 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:36:38,644 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:39,726 nipype.workflow INFO:\n",
"\t [Job 102] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:39,726 [ INFO] [Job 102] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_std_wf.gen_ref).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:39,730 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:39,730 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images\n",
"2024-10-15 23:36:40,214 [ WARNING] WARNING: Niworkflows will be deprecating reporting in favor of a standalone library \"nireports\".\n",
"2024-10-15 23:36:41,169 [ WARNING] WARNING: Niworkflows will be deprecating visualizations in favor of a standalone library \"nireports\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:41,188 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/recon_config\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:41,188 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/recon_config\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:41,197 nipype.workflow INFO:\n",
"\t [Node] Executing \"recon_config\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:41,197 [ INFO] [Node] Executing \"recon_config\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:41,287 nipype.workflow INFO:\n",
"\t [Node] Finished \"recon_config\", elapsed time 0.088071s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:41,287 [ INFO] [Node] Finished \"recon_config\", elapsed time 0.088071s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:41,726 nipype.workflow INFO:\n",
"\t [Job 77] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:41,726 [ INFO] [Job 77] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.recon_config).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:41,731 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:41,731 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:41,790 nipype.workflow INFO:\n",
"\t [Node] Finished \"_truncate_images0\", elapsed time 7.625552s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:41,790 [ INFO] [Node] Finished \"_truncate_images0\", elapsed time 7.625552s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:42,151 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fov_check\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:42,151 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fov_check\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:42,155 nipype.workflow INFO:\n",
"\t [Node] Executing \"fov_check\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:42,155 [ INFO] [Node] Executing \"fov_check\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:42,931 nipype.workflow INFO:\n",
"\t [Node] Finished \"fov_check\", elapsed time 0.774629s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:42,931 [ INFO] [Node] Finished \"fov_check\", elapsed time 0.774629s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:43,726 nipype.workflow INFO:\n",
"\t [Job 76] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:43,726 [ INFO] [Job 76] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.truncate_images).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:43,729 nipype.workflow INFO:\n",
"\t [Job 78] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:43,729 [ INFO] [Job 78] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fov_check).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:43,732 nipype.workflow INFO:\n",
"\t [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:43,732 [ INFO] [MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:44,125 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/autorecon1\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:44,125 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/autorecon1\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:44,127 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"_inu_n40\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:44,127 [ INFO] [Node] Setting-up \"_inu_n40\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/inu_n4/mapflow/_inu_n40\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:44,130 nipype.workflow INFO:\n",
"\t [Node] Executing \"_inu_n40\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:44,130 [ INFO] [Node] Executing \"_inu_n40\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:44,134 nipype.workflow INFO:\n",
"\t [Node] Executing \"autorecon1\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:44,134 [ INFO] [Node] Executing \"autorecon1\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:36:45,728 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:36:45,728 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4\n",
"2024-10-15 23:39:23,637 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:39:23,637 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:27,547 nipype.workflow INFO:\n",
"\t [Node] Finished \"_inu_n40\", elapsed time 163.416234s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:27,547 [ INFO] [Node] Finished \"_inu_n40\", elapsed time 163.416234s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:27,758 nipype.workflow INFO:\n",
"\t [Job 81] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:27,758 [ INFO] [Job 81] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.inu_n4).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:27,763 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:27,763 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:28,134 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_target\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:28,134 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/res_target\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:28,138 nipype.workflow INFO:\n",
"\t [Node] Executing \"res_target\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:28,138 [ INFO] [Node] Executing \"res_target\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:29,761 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:29,761 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:30,253 nipype.workflow INFO:\n",
"\t [Node] Finished \"res_target\", elapsed time 2.113633s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:30,253 [ INFO] [Node] Finished \"res_target\", elapsed time 2.113633s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:31,760 nipype.workflow INFO:\n",
"\t [Job 85] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:31,760 [ INFO] [Job 85] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.res_target).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:31,765 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:31,765 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:32,229 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_target\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:32,229 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/lap_target\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:32,233 nipype.workflow INFO:\n",
"\t [Node] Executing \"lap_target\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:32,233 [ INFO] [Node] Executing \"lap_target\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:33,764 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:33,764 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n",
"2024-10-15 23:39:44,050 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:39:44,051 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:46,201 nipype.workflow INFO:\n",
"\t [Node] Finished \"lap_target\", elapsed time 13.966291s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:46,201 [ INFO] [Node] Finished \"lap_target\", elapsed time 13.966291s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:47,763 nipype.workflow INFO:\n",
"\t [Job 86] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:47,763 [ INFO] [Job 86] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.lap_target).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:47,767 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:47,767 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:48,144 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/init_aff\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:48,144 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/init_aff\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:48,151 nipype.workflow INFO:\n",
"\t [Node] Executing \"init_aff\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:48,151 [ INFO] [Node] Executing \"init_aff\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:39:49,765 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:39:49,765 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 4.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n",
"2024-10-15 23:41:47,024 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:41:47,024 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:47,333 nipype.workflow INFO:\n",
"\t [Node] Finished \"init_aff\", elapsed time 119.179862s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:47,333 [ INFO] [Node] Finished \"init_aff\", elapsed time 119.179862s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:47,789 nipype.workflow INFO:\n",
"\t [Job 92] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:47,789 [ INFO] [Job 92] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.init_aff).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:47,794 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:47,794 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:48,213 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_target\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:48,213 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/mrg_target\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:48,218 nipype.workflow INFO:\n",
"\t [Node] Executing \"mrg_target\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:48,218 [ INFO] [Node] Executing \"mrg_target\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:48,219 nipype.workflow INFO:\n",
"\t [Node] Finished \"mrg_target\", elapsed time 0.000448s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:48,219 [ INFO] [Node] Finished \"mrg_target\", elapsed time 0.000448s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:49,789 nipype.workflow INFO:\n",
"\t [Job 93] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:49,789 [ INFO] [Job 93] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.mrg_target).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:49,794 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:49,794 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:50,255 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/norm\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:50,255 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/brain_extraction_wf/norm\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:50,270 nipype.workflow INFO:\n",
"\t [Node] Executing \"norm\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:50,270 [ INFO] [Node] Executing \"norm\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:41:51,792 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 2.00/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:41:51,792 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 2.00/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1\n",
"2024-10-15 23:48:41,343 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:48:41,344 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:48:41,832 nipype.workflow INFO:\n",
"\t [Node] Finished \"autorecon1\", elapsed time 717.696003s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:48:41,832 [ INFO] [Node] Finished \"autorecon1\", elapsed time 717.696003s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:48:41,898 nipype.workflow INFO:\n",
"\t [Job 82] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:48:41,898 [ INFO] [Job 82] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.autorecon1).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:48:41,906 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:48:41,906 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:48:42,626 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fsnative2t1w_xfm\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:48:42,626 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/surface_recon_wf/fsnative2t1w_xfm\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:48:42,633 nipype.workflow INFO:\n",
"\t [Node] Executing \"fsnative2t1w_xfm\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:48:42,633 [ INFO] [Node] Executing \"fsnative2t1w_xfm\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:48:43,900 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:48:43,900 [ INFO] [MultiProc] Running 2 tasks, and 2 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
"2024-10-15 23:49:37,106 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:49:37,107 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:37,478 nipype.workflow INFO:\n",
"\t [Node] Finished \"fsnative2t1w_xfm\", elapsed time 54.843542s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:37,478 [ INFO] [Node] Finished \"fsnative2t1w_xfm\", elapsed time 54.843542s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:37,910 nipype.workflow INFO:\n",
"\t [Job 87] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:37,910 [ INFO] [Job 87] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.surface_recon_wf.fsnative2t1w_xfm).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:37,915 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:37,915 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:38,444 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/lta2itk\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:38,444 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/lta2itk\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:38,451 nipype.workflow INFO:\n",
"\t [Node] Executing \"lta2itk\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:38,451 [ INFO] [Node] Executing \"lta2itk\" \n",
"2024-10-15 23:49:38,457 [ WARNING] WARNING: Reference space not set\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:38,459 nipype.workflow INFO:\n",
"\t [Node] Finished \"lta2itk\", elapsed time 0.006945s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:38,459 [ INFO] [Node] Finished \"lta2itk\", elapsed time 0.006945s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:38,461 nipype.workflow INFO:\n",
"\t [Job 94] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:38,461 [ INFO] [Job 94] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.lta2itk).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:38,952 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:38,952 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:38,960 nipype.workflow INFO:\n",
"\t [Node] Executing \"first_mask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:38,960 [ INFO] [Node] Executing \"first_mask\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:39,28 nipype.workflow INFO:\n",
"\t [Node] Finished \"first_mask\", elapsed time 0.066296s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:39,028 [ INFO] [Node] Finished \"first_mask\", elapsed time 0.066296s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:39,911 nipype.workflow INFO:\n",
"\t [Job 106] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:39,911 [ INFO] [Job 106] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:39,915 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:39,915 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,413 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_anat_fsnative\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,413 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_anat_fsnative\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,421 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_anat_fsnative\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,421 [ INFO] [Node] Executing \"ds_anat_fsnative\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,436 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_anat_fsnative\", elapsed time 0.012639s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,436 [ INFO] [Node] Finished \"ds_anat_fsnative\", elapsed time 0.012639s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,439 nipype.workflow INFO:\n",
"\t [Job 104] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,439 [ INFO] [Job 104] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_anat_fsnative).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,900 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_fsnative_anat\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,900 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/anat_fit_wf/ds_fs_registration_wf/ds_fsnative_anat\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,908 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_fsnative_anat\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,908 [ INFO] [Node] Executing \"ds_fsnative_anat\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,920 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_fsnative_anat\", elapsed time 0.009851s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,920 [ INFO] [Node] Finished \"ds_fsnative_anat\", elapsed time 0.009851s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:40,923 nipype.workflow INFO:\n",
"\t [Job 105] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:40,923 [ INFO] [Job 105] Completed (fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.ds_fs_registration_wf.ds_fsnative_anat).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:41,398 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:41,398 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/first_mask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:41,404 nipype.workflow INFO:\n",
"\t [Node] Executing \"first_mask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:41,404 [ INFO] [Node] Executing \"first_mask\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:41,461 nipype.workflow INFO:\n",
"\t [Node] Finished \"first_mask\", elapsed time 0.055631s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:41,461 [ INFO] [Node] Finished \"first_mask\", elapsed time 0.055631s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:41,911 nipype.workflow INFO:\n",
"\t [Job 107] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:41,911 [ INFO] [Job 107] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.first_mask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:41,915 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:41,915 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:42,375 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:42,375 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:42,380 nipype.workflow INFO:\n",
"\t [Node] Executing \"unifize\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:42,380 [ INFO] [Node] Executing \"unifize\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:49:43,913 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:49:43,913 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
"2024-10-15 23:51:39,923 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:51:39,924 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:51:40,118 nipype.workflow INFO:\n",
"\t [Node] Finished \"unifize\", elapsed time 117.737009s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:51:40,118 [ INFO] [Node] Finished \"unifize\", elapsed time 117.737009s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:51:41,937 nipype.workflow INFO:\n",
"\t [Job 110] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:51:41,937 [ INFO] [Job 110] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:51:41,943 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:51:41,943 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:51:42,403 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:51:42,403 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/unifize\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:51:42,408 nipype.workflow INFO:\n",
"\t [Node] Executing \"unifize\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:51:42,408 [ INFO] [Node] Executing \"unifize\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:51:43,940 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:51:43,940 [ INFO] [MultiProc] Running 2 tasks, and 1 jobs ready. Free memory (GB): 6.80/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
"2024-10-15 23:53:13,995 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:53:13,995 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:14,342 nipype.workflow INFO:\n",
"\t [Node] Finished \"unifize\", elapsed time 91.932257s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:14,342 [ INFO] [Node] Finished \"unifize\", elapsed time 91.932257s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:15,956 nipype.workflow INFO:\n",
"\t [Job 111] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:15,956 [ INFO] [Job 111] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.unifize).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:15,962 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:15,962 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:16,379 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:16,379 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:16,385 nipype.workflow INFO:\n",
"\t [Node] Executing \"fixhdr_unifize\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:16,385 [ INFO] [Node] Executing \"fixhdr_unifize\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:16,441 nipype.workflow INFO:\n",
"\t [Node] Finished \"fixhdr_unifize\", elapsed time 0.054894s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:16,441 [ INFO] [Node] Finished \"fixhdr_unifize\", elapsed time 0.054894s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:17,956 nipype.workflow INFO:\n",
"\t [Job 114] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:17,956 [ INFO] [Job 114] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:17,961 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:17,961 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:18,335 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:18,335 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_unifize\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:18,340 nipype.workflow INFO:\n",
"\t [Node] Executing \"fixhdr_unifize\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:18,340 [ INFO] [Node] Executing \"fixhdr_unifize\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:18,388 nipype.workflow INFO:\n",
"\t [Node] Finished \"fixhdr_unifize\", elapsed time 0.046504s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:18,388 [ INFO] [Node] Finished \"fixhdr_unifize\", elapsed time 0.046504s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:19,956 nipype.workflow INFO:\n",
"\t [Job 115] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:19,956 [ INFO] [Job 115] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:19,963 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:19,963 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:20,331 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:20,331 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:20,336 nipype.workflow INFO:\n",
"\t [Node] Executing \"skullstrip_second_pass\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:20,336 [ INFO] [Node] Executing \"skullstrip_second_pass\" \n",
"2024-10-15 23:53:21,110 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:53:21,110 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:21,363 nipype.workflow INFO:\n",
"\t [Node] Finished \"skullstrip_second_pass\", elapsed time 1.025038s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:21,363 [ INFO] [Node] Finished \"skullstrip_second_pass\", elapsed time 1.025038s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:21,957 nipype.workflow INFO:\n",
"\t [Job 119] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:21,957 [ INFO] [Job 119] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:21,961 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:21,961 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:22,338 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:22,338 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/skullstrip_second_pass\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:22,344 nipype.workflow INFO:\n",
"\t [Node] Executing \"skullstrip_second_pass\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:22,344 [ INFO] [Node] Executing \"skullstrip_second_pass\" \n",
"2024-10-15 23:53:22,473 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:53:22,473 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:22,732 nipype.workflow INFO:\n",
"\t [Node] Finished \"skullstrip_second_pass\", elapsed time 0.386742s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:22,732 [ INFO] [Node] Finished \"skullstrip_second_pass\", elapsed time 0.386742s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:23,957 nipype.workflow INFO:\n",
"\t [Job 120] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:23,957 [ INFO] [Job 120] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:23,965 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:23,965 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:24,287 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:24,287 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:24,293 nipype.workflow INFO:\n",
"\t [Node] Executing \"fixhdr_skullstrip2\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:24,293 [ INFO] [Node] Executing \"fixhdr_skullstrip2\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:24,317 nipype.workflow INFO:\n",
"\t [Node] Finished \"fixhdr_skullstrip2\", elapsed time 0.023341s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:24,317 [ INFO] [Node] Finished \"fixhdr_skullstrip2\", elapsed time 0.023341s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:25,957 nipype.workflow INFO:\n",
"\t [Job 122] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:25,957 [ INFO] [Job 122] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:25,962 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:25,962 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:26,444 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:26,444 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/fixhdr_skullstrip2\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:26,449 nipype.workflow INFO:\n",
"\t [Node] Executing \"fixhdr_skullstrip2\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:26,449 [ INFO] [Node] Executing \"fixhdr_skullstrip2\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:26,472 nipype.workflow INFO:\n",
"\t [Node] Finished \"fixhdr_skullstrip2\", elapsed time 0.021532s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:26,472 [ INFO] [Node] Finished \"fixhdr_skullstrip2\", elapsed time 0.021532s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:27,958 nipype.workflow INFO:\n",
"\t [Job 123] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:27,958 [ INFO] [Job 123] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:27,962 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:27,962 [ INFO] [MultiProc] Running 1 tasks, and 2 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:28,335 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:28,335 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:28,341 nipype.workflow INFO:\n",
"\t [Node] Executing \"combine_masks\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:28,341 [ INFO] [Node] Executing \"combine_masks\" \n",
"2024-10-15 23:53:28,448 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:53:28,448 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:28,738 nipype.workflow INFO:\n",
"\t [Node] Finished \"combine_masks\", elapsed time 0.395673s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:28,738 [ INFO] [Node] Finished \"combine_masks\", elapsed time 0.395673s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:29,959 nipype.workflow INFO:\n",
"\t [Job 125] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:29,959 [ INFO] [Job 125] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:29,963 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:29,963 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:30,347 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:30,347 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/combine_masks\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:30,354 nipype.workflow INFO:\n",
"\t [Node] Executing \"combine_masks\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:30,354 [ INFO] [Node] Executing \"combine_masks\" \n",
"2024-10-15 23:53:30,408 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n",
"2024-10-15 23:53:30,408 [ WARNING] WARNING: 'locale.getdefaultlocale' is deprecated and slated for removal in Python 3.15. Use setlocale(), getencoding() and getlocale() instead.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:30,673 nipype.workflow INFO:\n",
"\t [Node] Finished \"combine_masks\", elapsed time 0.317749s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:30,673 [ INFO] [Node] Finished \"combine_masks\", elapsed time 0.317749s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:31,959 nipype.workflow INFO:\n",
"\t [Job 126] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:31,959 [ INFO] [Job 126] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.combine_masks).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:31,962 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:31,962 [ INFO] [MultiProc] Running 1 tasks, and 4 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:32,339 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:32,339 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:32,344 nipype.workflow INFO:\n",
"\t [Node] Executing \"apply_mask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:32,344 [ INFO] [Node] Executing \"apply_mask\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:32,398 nipype.workflow INFO:\n",
"\t [Node] Finished \"apply_mask\", elapsed time 0.052575s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:32,398 [ INFO] [Node] Finished \"apply_mask\", elapsed time 0.052575s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:33,959 nipype.workflow INFO:\n",
"\t [Job 129] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:33,959 [ INFO] [Job 129] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:33,964 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:33,964 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,313 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,313 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,321 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_boldmask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,321 [ INFO] [Node] Executing \"ds_boldmask\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,351 nipype.interface WARNING:\n",
"\t Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-brain_mask.nii.gz dtype from float32 to uint8\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,351 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-1_desc-brain_mask.nii.gz dtype from float32 to uint8\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,417 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_boldmask\", elapsed time 0.094115s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,417 [ INFO] [Node] Finished \"ds_boldmask\", elapsed time 0.094115s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,420 nipype.workflow INFO:\n",
"\t [Job 130] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,420 [ INFO] [Job 130] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,759 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,759 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/enhance_and_skullstrip_bold_wf/apply_mask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,764 nipype.workflow INFO:\n",
"\t [Node] Executing \"apply_mask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,764 [ INFO] [Node] Executing \"apply_mask\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:34,812 nipype.workflow INFO:\n",
"\t [Node] Finished \"apply_mask\", elapsed time 0.047292s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:34,812 [ INFO] [Node] Finished \"apply_mask\", elapsed time 0.047292s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:35,959 nipype.workflow INFO:\n",
"\t [Job 131] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:35,959 [ INFO] [Job 131] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.enhance_and_skullstrip_bold_wf.apply_mask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:35,964 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:35,964 [ INFO] [MultiProc] Running 1 tasks, and 3 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,323 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,323 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_fit_wf/ds_boldmask_wf/ds_boldmask\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,330 nipype.workflow INFO:\n",
"\t [Node] Executing \"ds_boldmask\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,330 [ INFO] [Node] Executing \"ds_boldmask\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,352 nipype.interface WARNING:\n",
"\t Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-brain_mask.nii.gz dtype from float32 to uint8\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,352 [ WARNING] Changing /home/jovyan/example-notebooks/books/functional_imaging/fmriprep-output/sub-08/func/sub-08_task-flanker_run-2_desc-brain_mask.nii.gz dtype from float32 to uint8\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,396 nipype.workflow INFO:\n",
"\t [Node] Finished \"ds_boldmask\", elapsed time 0.064103s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,396 [ INFO] [Node] Finished \"ds_boldmask\", elapsed time 0.064103s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,399 nipype.workflow INFO:\n",
"\t [Job 132] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,399 [ INFO] [Job 132] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_fit_wf.ds_boldmask_wf.ds_boldmask).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,769 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/dvars\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,769 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/dvars\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:36,943 nipype.workflow INFO:\n",
"\t [Node] Executing \"dvars\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:36,943 [ INFO] [Node] Executing \"dvars\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:37,962 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:37,962 [ INFO] [MultiProc] Running 2 tasks, and 3 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:47,291 nipype.workflow INFO:\n",
"\t [Node] Finished \"dvars\", elapsed time 10.346177s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:47,291 [ INFO] [Node] Finished \"dvars\", elapsed time 10.346177s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:47,962 nipype.workflow INFO:\n",
"\t [Job 135] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:47,962 [ INFO] [Job 135] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.dvars).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:47,967 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:47,967 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:48,330 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcompcor\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:48,330 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/tcompcor\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:48,338 nipype.workflow INFO:\n",
"\t [Node] Executing \"tcompcor\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:48,338 [ INFO] [Node] Executing \"tcompcor\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:49,965 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:49,965 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
"2024-10-15 23:53:50,313 [ WARNING] WARNING: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.\n",
"To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:50,345 nipype.workflow INFO:\n",
"\t [Node] Finished \"tcompcor\", elapsed time 2.006826s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:50,345 [ INFO] [Node] Finished \"tcompcor\", elapsed time 2.006826s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:51,963 nipype.workflow INFO:\n",
"\t [Job 136] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:51,963 [ INFO] [Job 136] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.tcompcor).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:51,970 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:51,970 [ INFO] [MultiProc] Running 1 tasks, and 5 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:52,330 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/dvars\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:52,330 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/dvars\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:52,337 nipype.workflow INFO:\n",
"\t [Node] Executing \"dvars\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:52,337 [ INFO] [Node] Executing \"dvars\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:53:53,966 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:53:53,966 [ INFO] [MultiProc] Running 2 tasks, and 4 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:04,312 nipype.workflow INFO:\n",
"\t [Node] Finished \"dvars\", elapsed time 11.973813s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:04,312 [ INFO] [Node] Finished \"dvars\", elapsed time 11.973813s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:05,966 nipype.workflow INFO:\n",
"\t [Job 137] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:05,966 [ INFO] [Job 137] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.dvars).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:05,971 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:05,971 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:06,358 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcompcor\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:06,358 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_2_wf/bold_confounds_wf/tcompcor\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:06,367 nipype.workflow INFO:\n",
"\t [Node] Executing \"tcompcor\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:06,367 [ INFO] [Node] Executing \"tcompcor\" \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:07,969 nipype.workflow INFO:\n",
"\t [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:07,969 [ INFO] [MultiProc] Running 2 tasks, and 5 jobs ready. Free memory (GB): 6.03/10.00, Free processors: 0/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n",
"2024-10-15 23:54:08,537 [ WARNING] WARNING: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.\n",
"To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:08,568 nipype.workflow INFO:\n",
"\t [Node] Finished \"tcompcor\", elapsed time 2.200094s.\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:08,568 [ INFO] [Node] Finished \"tcompcor\", elapsed time 2.200094s.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:09,967 nipype.workflow INFO:\n",
"\t [Job 138] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor).\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:09,967 [ INFO] [Job 138] Completed (fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_2_wf.bold_confounds_wf.tcompcor).\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:09,972 nipype.workflow INFO:\n",
"\t [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:09,972 [ INFO] [MultiProc] Running 1 tasks, and 6 jobs ready. Free memory (GB): 7.00/10.00, Free processors: 1/2.\n",
" Currently running:\n",
" * fmriprep_24_1_wf.sub_08_wf.anat_fit_wf.brain_extraction_wf.norm\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:10,321 nipype.workflow INFO:\n",
"\t [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_dvars_header\".\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:10,321 [ INFO] [Node] Setting-up \"fmriprep_24_1_wf.sub_08_wf.bold_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header\" in \"/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_24_1_wf/sub_08_wf/bold_task_flanker_run_1_wf/bold_confounds_wf/add_dvars_header\".\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"241015-23:54:10,325 nipype.workflow INFO:\n",
"\t [Node] Executing \"add_dvars_header\" \n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-10-15 23:54:10,325 [ INFO] [Node] Executing \"add_dvars_header\"