This folder contains example notebooks that demonstrate diffusion MRI preprocessing and analysis using MRtrix and FSL.
- Neurodesk
- Examples
- Example Notebook Template
- Diffusion Imaging
- Electrophysiology
- Functional Imaging
- AFNI Preprocessing
- AFNI Preprocessing and GLM
- AFNI Preprocessing & Group Analysis
- Processing task-based FMRI with AFNI and afni_proc.py
- Scripted Higher-Level Analyses in FSL using FEAT derivatives
- Scripted First-Level Analyses in FSL using fMRIPrep data
- FSL Preprocessing and GLM
- Resting state with FSLnets
- NiWrap and Connectome Workbench
- DeepRetinotopy Toolbox
- Resting-State fMRI Analysis in R
- Nipype-SPM fMRI Analysis
- fMRIprep
- Nipype-FSL fMRI Analysis
- Introduction to Preprocessing
- FreeSurfer: mri_vol2surf
- tedana: TE Dependent ANAlysis
- Quantitative Imaging
- Spectroscopy
- Structural Imaging
- Workflows
- Tutorials
- Contribute