Skip to main content

Ctrl+K

Neurodesk environment

Workflows

Neurodesk Tools Demo
MRIQC
PyBIDS
RISE Slideshow
BIDS conversion
Nipype on Neurodesk
Basic Nipype
Papermill Slurm Job Submission

Structural Imaging

FSL course - BET
Brain Extraction Tools
FreeSurfer
QSMxT
SCT Toolbox

Spectroscopy

MR Spectroscopy with LCModel

Diffusion Imaging

TBSS Tutorial
MRtrix: Part 1
MRtrix: Part 2
MRtrix: Part 3
MRtrix3Tissue

Functional Imaging

AFNI Preprocessing
AFNI Preprocessing and GLM
AFNI Preprocessing & Group Analysis
FSL Preprocessing and GLM
Resting state with FSLnets
NiWrap and Connectome Workbench
ASLprep
DeepRetinotopy
Nipype-SPM fMRI Analysis
fMRIprep
Nipype-FSL fMRI Analysis
Introduction to Preprocessing
FreeSurfer: mri_vol2surf
tedana: TE Dependent ANAlysis

Electrophysiology

EEG Analysis with MNE

Repository
Open issue

Search

Ctrl+K

By Neurodesk Team

© Copyright 2023.