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Neurodesk environment

Workflows

Nipype on Neurodesk
Basic Nipype Example
RISE Slideshow of a Jupyter Notebook

Structural Imaging

SCT Toolbox
Freesurfer
Brain extraction with different software packages
QSMxT

Diffusion Imaging

MRtrix3Tissue

Functional Imaging

ASLprep Example
Introduction to Preprocessing
First and Second Level fMRI Analysis with SPM
FSL’s fMRI Data Analysis via Nipype
Freesurfer + DeepRetinotopy example
fMRIprep Example

Repository
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By Neurodesk Team

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