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Neurodesk environment
Workflows
BIDS conversion
Nipype on Neurodesk
Basic Nipype Example
RISE Slideshow of a Jupyter Notebook
Structural Imaging
SCT Toolbox
Freesurfer
Brain extraction with different software packages
QSMxT
Diffusion Imaging
MRtrix3Tissue
Functional Imaging
ASLprep Example
Introduction to Preprocessing
First and Second Level fMRI Analysis with SPM
FSL’s fMRI Data Analysis via Nipype
Freesurfer + DeepRetinotopy example
fMRIprep Example
Repository
Open issue
Index
