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Neurodesk environment
Workflows
RISE Slideshow of a Jupyter Notebook
BIDS conversion
Nipype on Neurodesk
Basic Nipype
Structural Imaging
Brain extraction with different software packages
Freesurfer
QSMxT
SCT Toolbox
Diffusion Imaging
Diffusion Analysis with MRtrix: Part 2 - Constrained Spherical Deconvolution and Tissue estimation
Diffusion Analysis with MRtrix: Part 3 - Registration and Streamline Fitting
Diffusion Analysis with MRtrix: Part 1 - Preprocessing
MRtrix3Tissue
Functional Imaging
ASLprep
DeepRetinotopy
First and Second Level fMRI Analysis with SPM
fMRIprep
Introduction to Preprocessing
FSL’s fMRI Data Analysis via Nipype
Repository
Open issue
Index
