Fmriprep Example#
Author: Steffen Bollmann
Setup Neurodesk#
%%capture
import os
import sys
IN_COLAB = 'google.colab' in sys.modules
if IN_COLAB:
os.environ["LD_PRELOAD"] = "";
os.environ["APPTAINER_BINDPATH"] = "/content,/tmp,/cvmfs"
os.environ["MPLCONFIGDIR"] = "/content/matplotlib-mpldir"
os.environ["LMOD_CMD"] = "/usr/share/lmod/lmod/libexec/lmod"
!curl -J -O https://raw.githubusercontent.com/NeuroDesk/neurocommand/main/googlecolab_setup.sh
!chmod +x googlecolab_setup.sh
!./googlecolab_setup.sh
os.environ["MODULEPATH"] = ':'.join(map(str, list(map(lambda x: os.path.join(os.path.abspath('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/'), x),os.listdir('/cvmfs/neurodesk.ardc.edu.au/neurodesk-modules/')))))
# Output CPU information:
!cat /proc/cpuinfo | grep 'vendor' | uniq
!cat /proc/cpuinfo | grep 'model name' | uniq
vendor_id : AuthenticAMD
model name : AMD EPYC 7742 64-Core Processor
Run fMRIprep#
# load fmriprep
import lmod
import os
await lmod.load('fmriprep/22.1.1')
await lmod.list()
['fmriprep/22.1.1']
# Request a freesurfer license and store it in your homedirectory. This is just an exampe - please replace with your license id:
!echo "Steffen.Bollmann@cai.uq.edu.au" > ~/.license
!echo "21029" >> ~/.license
!echo "*Cqyn12sqTCxo" >> ~/.license
!echo "FSxgcvGkNR59Y" >> ~/.license
# download data
!datalad install https://github.com/OpenNeuroDatasets/ds000102.git
!cd ds000102 && datalad get sub-08
!export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=2 && export MPLCONFIGDIR=~/matplotlib-mpldir && fmriprep ds000102/ content/ participant --fs-license-file ~/.license --output-spaces T1w MNI152NLin2009cAsym fsaverage fsnative --participant-label 08 --nprocs $ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS --mem 10000 --skip_bids_validation -v
You are using fMRIPrep-22.1.1, and a newer version of fMRIPrep is available: 23.1.4.
Please check out our documentation about how and when to upgrade:
https://fmriprep.readthedocs.io/en/latest/faq.html#upgrading
--topup-max-vols input is no longer used and the flag will be removed in a future release.
231218-22:04:02,411 cli INFO:
Telemetry system to collect crashes and errors is enabled - thanks for your feedback!. Use option ``--notrack`` to opt out.
231218-22:04:18,834 nipype.workflow IMPORTANT:
Running fMRIPrep version 22.1.1
License NOTICE ##################################################
fMRIPrep 22.1.1
Copyright 2022 The NiPreps Developers.
This product includes software developed by
the NiPreps Community (https://nipreps.org/).
Portions of this software were developed at the Department of
Psychology at Stanford University, Stanford, CA, US.
This software redistributes the versioneer Python package, which is
Public domain source code.
This software is also distributed as a Docker container image.
The bootstraping file for the image ("Dockerfile") is licensed
under the MIT License.
This software may be distributed through an add-on package called
"Docker Wrapper" that is under the BSD 3-clause License.
#################################################################
231218-22:04:18,834 nipype.workflow WARNING:
Previous output generated by version 0+unknown found.
231218-22:04:19,158 nipype.workflow IMPORTANT:
Building fMRIPrep's workflow:
* BIDS dataset path: /home/jovyan/example-notebooks/books/functional_imaging/ds000102.
* Participant list: ['08'].
* Run identifier: 20231218-220358_43aaeda8-750d-484c-8aca-f0307a4fd3ba.
* Output spaces: T1w MNI152NLin2009cAsym:res-native fsaverage:den-164k fsnative.
* Pre-run FreeSurfer's SUBJECTS_DIR: /home/jovyan/example-notebooks/books/functional_imaging/content/sourcedata/freesurfer.
231218-22:04:20,489 nipype.workflow INFO:
No single-band-reference found for sub-08_task-flanker_run-1_bold.nii.gz.
231218-22:04:20,927 nipype.workflow INFO:
No single-band-reference found for sub-08_task-flanker_run-2_bold.nii.gz.
231218-22:04:25,802 nipype.workflow INFO:
fMRIPrep workflow graph with 619 nodes built successfully.
231218-22:04:44,447 nipype.workflow IMPORTANT:
fMRIPrep started!
231218-22:04:44,813 nipype.workflow INFO:
Workflow fmriprep_22_1_wf settings: ['check', 'execution', 'logging', 'monitoring']
231218-22:04:45,389 nipype.workflow INFO:
Running in parallel.
231218-22:04:45,392 nipype.workflow WARNING:
Some nodes exceed the total amount of memory available (10.00GB).
231218-22:04:45,403 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 23 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:04:45,566 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.fsdir_run_20231218_220358_43aaeda8_750d_484c_8aca_f0307a4fd3ba" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/fsdir_run_20231218_220358_43aaeda8_750d_484c_8aca_f0307a4fd3ba".
231218-22:04:45,569 nipype.workflow INFO:
[Node] Executing "fsdir_run_20231218_220358_43aaeda8_750d_484c_8aca_f0307a4fd3ba" <niworkflows.interfaces.bids.BIDSFreeSurferDir>
231218-22:04:45,593 nipype.workflow INFO:
[Node] Finished "fsdir_run_20231218_220358_43aaeda8_750d_484c_8aca_f0307a4fd3ba", elapsed time 0.000803s.
231218-22:04:45,597 nipype.workflow INFO:
[Job 0] Completed (fmriprep_22_1_wf.fsdir_run_20231218_220358_43aaeda8_750d_484c_8aca_f0307a4fd3ba).
231218-22:04:45,736 nipype.workflow INFO:
[Job 1] Cached (fmriprep_22_1_wf.single_subject_08_wf.bidssrc).
231218-22:04:45,738 nipype.workflow INFO:
[Job 2] Cached (fmriprep_22_1_wf.single_subject_08_wf.about).
231218-22:04:47,404 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 23 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:04:47,532 nipype.workflow INFO:
[Job 3] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.res_tmpl).
231218-22:04:47,534 nipype.workflow INFO:
[Job 4] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.full_wm).
231218-22:04:49,406 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:04:49,539 nipype.workflow INFO:
[Job 5] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.lap_tmpl).
231218-22:04:49,541 nipype.workflow INFO:
[Job 6] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_source).
231218-22:04:51,408 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 20 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:04:51,556 nipype.workflow INFO:
[Job 7] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.raw_sources).
231218-22:04:51,559 nipype.workflow INFO:
[Job 8] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.val_bold).
231218-22:04:53,558 nipype.workflow INFO:
[Job 9] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.get_dummy).
231218-22:04:53,560 nipype.workflow INFO:
[Job 10] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_source).
231218-22:04:55,559 nipype.workflow INFO:
[Job 11] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.raw_sources).
231218-22:04:55,562 nipype.workflow INFO:
[Job 12] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.val_bold).
231218-22:04:57,552 nipype.workflow INFO:
[Job 13] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.get_dummy).
231218-22:04:57,553 nipype.workflow INFO:
[Job 14] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.split_desc).
231218-22:04:59,415 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:04:59,543 nipype.workflow INFO:
[Job 15] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.tf_select).
231218-22:04:59,544 nipype.workflow INFO:
[Job 16] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.split_target).
231218-22:05:01,417 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:01,546 nipype.workflow INFO:
[Job 17] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.select_tpl).
231218-22:05:01,547 nipype.workflow INFO:
[Job 18] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.spacesource).
231218-22:05:03,419 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:03,551 nipype.workflow INFO:
[Job 19] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.split_target).
231218-22:05:03,553 nipype.workflow INFO:
[Job 20] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.select_tpl).
231218-22:05:05,421 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:05,547 nipype.workflow INFO:
[Job 21] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.spacesource).
231218-22:05:05,549 nipype.workflow INFO:
[Job 22] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.spacesource).
231218-22:05:07,551 nipype.workflow INFO:
[Job 23] Cached (fmriprep_22_1_wf.single_subject_08_wf.bids_info).
231218-22:05:07,554 nipype.workflow INFO:
[Job 24] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_template_wf.t1w_ref_dimensions).
231218-22:05:09,425 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:09,555 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.ds_report_about" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/ds_report_about".
231218-22:05:09,558 nipype.workflow INFO:
[Node] Executing "ds_report_about" <fmriprep.interfaces.DerivativesDataSink>
231218-22:05:09,567 nipype.workflow INFO:
[Node] Finished "ds_report_about", elapsed time 0.007254s.
231218-22:05:09,569 nipype.workflow INFO:
[Job 25] Completed (fmriprep_22_1_wf.single_subject_08_wf.ds_report_about).
231218-22:05:09,698 nipype.workflow INFO:
[Job 26] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.mrg_tmpl).
231218-22:05:09,700 nipype.workflow INFO:
[Job 27] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.select_bold).
231218-22:05:11,427 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:11,557 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.ds_report_validation" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/ds_report_validation".
231218-22:05:11,560 nipype.workflow INFO:
[Node] Executing "ds_report_validation" <fmriprep.interfaces.DerivativesDataSink>
231218-22:05:11,566 nipype.workflow INFO:
[Node] Finished "ds_report_validation", elapsed time 0.005226s.
231218-22:05:11,568 nipype.workflow INFO:
[Job 28] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.ds_report_validation).
231218-22:05:11,698 nipype.workflow INFO:
[Job 29] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.calc_dummy_scans).
231218-22:05:11,702 nipype.workflow INFO:
[Job 30] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.gen_avg).
231218-22:05:13,428 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:13,559 nipype.workflow INFO:
[Job 31] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.select_bold).
231218-22:05:13,562 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.ds_report_validation" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/ds_report_validation".
231218-22:05:13,565 nipype.workflow INFO:
[Node] Executing "ds_report_validation" <fmriprep.interfaces.DerivativesDataSink>
231218-22:05:13,571 nipype.workflow INFO:
[Node] Finished "ds_report_validation", elapsed time 0.005116s.
231218-22:05:13,573 nipype.workflow INFO:
[Job 32] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.ds_report_validation).
231218-22:05:13,704 nipype.workflow INFO:
[Job 33] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.calc_dummy_scans).
231218-22:05:15,430 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:15,563 nipype.workflow INFO:
[Job 34] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.gen_avg).
231218-22:05:15,565 nipype.workflow INFO:
[Job 35] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.tf_select).
231218-22:05:17,562 nipype.workflow INFO:
[Job 36] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.gen_tplid).
231218-22:05:17,564 nipype.workflow INFO:
[Job 37] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.select_tpl).
231218-22:05:19,434 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:19,566 nipype.workflow INFO:
[Job 38] Cached (fmriprep_22_1_wf.single_subject_08_wf.summary).
231218-22:05:21,437 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.fs_isrunning
231218-22:05:21,569 nipype.workflow INFO:
[Job 40] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_template_wf.t1w_conform).
231218-22:05:23,234 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.fs_isrunning" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/fs_isrunning".
231218-22:05:23,236 nipype.workflow INFO:
[Node] Executing "fs_isrunning" <nipype.interfaces.utility.wrappers.Function>
231218-22:05:23,249 nipype.workflow INFO:
[Node] Finished "fs_isrunning", elapsed time 0.00275s.
231218-22:05:23,437 nipype.workflow INFO:
[Job 39] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.fs_isrunning).
231218-22:05:23,440 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:23,579 nipype.workflow INFO:
[Job 41] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.t1w_conform_check).
231218-22:05:23,581 nipype.workflow INFO:
[Job 42] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.raw_sources).
231218-22:05:25,441 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 9 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:25,572 nipype.workflow INFO:
[Job 43] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_split).
231218-22:05:25,575 nipype.workflow INFO:
[Job 44] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff).
231218-22:05:27,573 nipype.workflow INFO:
[Job 45] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_hmc_wf.mcflirt).
231218-22:05:27,576 nipype.workflow INFO:
[Job 46] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_split).
231218-22:05:29,444 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:29,573 nipype.workflow INFO:
[Job 47] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff).
231218-22:05:29,576 nipype.workflow INFO:
[Job 48] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_hmc_wf.mcflirt).
231218-22:05:31,446 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:31,576 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.ds_report_summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/ds_report_summary".
231218-22:05:31,579 nipype.workflow INFO:
[Node] Executing "ds_report_summary" <fmriprep.interfaces.DerivativesDataSink>
231218-22:05:31,586 nipype.workflow INFO:
[Node] Finished "ds_report_summary", elapsed time 0.00535s.
231218-22:05:31,588 nipype.workflow INFO:
[Job 49] Completed (fmriprep_22_1_wf.single_subject_08_wf.ds_report_summary).
231218-22:05:31,720 nipype.workflow INFO:
[Job 50] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_template_wf.get1st).
231218-22:05:31,723 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_conform_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_reports_wf/ds_t1w_conform_report".
231218-22:05:31,726 nipype.workflow INFO:
[Node] Executing "ds_t1w_conform_report" <smriprep.interfaces.DerivativesDataSink>
231218-22:05:31,732 nipype.workflow INFO:
[Node] Finished "ds_t1w_conform_report", elapsed time 0.005117s.
231218-22:05:31,734 nipype.workflow INFO:
[Job 51] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_conform_report).
231218-22:05:31,875 nipype.workflow INFO:
[Job 52] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.gen_ref).
231218-22:05:33,448 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:33,583 nipype.workflow INFO:
[Job 53] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm).
231218-22:05:33,599 nipype.workflow INFO:
[Job 54] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_hmc_wf.fsl2itk).
231218-22:05:35,450 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:35,586 nipype.workflow INFO:
[Job 55] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_hmc_wf.normalize_motion).
231218-22:05:35,595 nipype.workflow INFO:
[Job 56] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.add_rmsd_header).
231218-22:05:37,588 nipype.workflow INFO:
[Job 57] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.gen_ref).
231218-22:05:37,592 nipype.workflow INFO:
[Job 58] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.norm).
231218-22:05:39,454 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:39,596 nipype.workflow INFO:
[Job 59] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_hmc_wf.fsl2itk).
231218-22:05:39,606 nipype.workflow INFO:
[Job 60] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_hmc_wf.normalize_motion).
231218-22:05:41,456 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:41,595 nipype.workflow INFO:
[Job 61] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.add_rmsd_header).
231218-22:05:41,597 nipype.workflow INFO:
[Job 62] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_validate).
231218-22:05:43,458 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:43,588 nipype.workflow INFO:
[Job 63] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
231218-22:05:43,590 nipype.workflow INFO:
[Job 64] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_bold_trans_wf.merge_xforms).
231218-22:05:45,594 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_hmc_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_hmc_xfm".
231218-22:05:45,598 nipype.workflow INFO:
[Node] Executing "ds_bold_hmc_xfm" <fmriprep.interfaces.DerivativesDataSink>
231218-22:05:45,603 nipype.workflow INFO:
[Node] Finished "ds_bold_hmc_xfm", elapsed time 0.004236s.
231218-22:05:45,605 nipype.workflow INFO:
[Job 65] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_hmc_xfm).
231218-22:05:45,735 nipype.workflow INFO:
[Job 66] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.fdisp).
231218-22:05:45,737 nipype.workflow INFO:
[Job 67] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.add_motion_headers).
231218-22:05:47,462 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 10 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:47,591 nipype.workflow INFO:
[Job 68] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
231218-22:05:47,593 nipype.workflow INFO:
[Job 69] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_bold_trans_wf.merge_xforms).
231218-22:05:49,593 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_hmc_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_hmc_xfm".
231218-22:05:49,596 nipype.workflow INFO:
[Node] Executing "ds_bold_hmc_xfm" <fmriprep.interfaces.DerivativesDataSink>
231218-22:05:49,601 nipype.workflow INFO:
[Node] Finished "ds_bold_hmc_xfm", elapsed time 0.004095s.
231218-22:05:49,603 nipype.workflow INFO:
[Job 70] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_hmc_xfm).
231218-22:05:49,733 nipype.workflow INFO:
[Job 71] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.fdisp).
231218-22:05:49,736 nipype.workflow INFO:
[Job 72] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.add_motion_headers).
231218-22:05:51,466 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:51,594 nipype.workflow INFO:
[Job 73] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.truncate_images).
231218-22:05:51,597 nipype.workflow INFO:
[Job 74] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.recon_config).
231218-22:05:53,468 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:53,597 nipype.workflow INFO:
[Job 75] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.fov_check).
231218-22:05:53,600 nipype.workflow INFO:
[Job 76] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.check_hdr).
231218-22:05:55,623 nipype.workflow INFO:
[Job 77] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_bold_trans_wf.bold_transform).
231218-22:05:55,626 nipype.workflow INFO:
[Job 78] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.check_hdr).
231218-22:05:57,611 nipype.workflow INFO:
[Job 79] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_bold_trans_wf.bold_transform).
231218-22:05:57,615 nipype.workflow INFO:
[Job 80] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.inu_n4).
231218-22:05:59,473 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 152 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:05:59,607 nipype.workflow INFO:
[Job 82] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:06:01,453 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon1".
231218-22:06:01,456 nipype.workflow INFO:
[Node] Executing "autorecon1" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:06:01,457 nipype.interface INFO:
recon-all complete : Not running
231218-22:06:01,457 nipype.interface INFO:
recon-all complete : Not running
231218-22:06:01,476 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 296 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon1
231218-22:06:01,546 nipype.workflow INFO:
[Node] Finished "autorecon1", elapsed time 0.088632s.
231218-22:06:01,611 nipype.workflow INFO:
[Job 84] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:06:03,476 nipype.workflow INFO:
[Job 81] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon1).
231218-22:06:03,478 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 297 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:03,607 nipype.workflow INFO:
[Job 86] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.res_target).
231218-22:06:03,609 nipype.workflow INFO:
[Job 87] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.lap_target).
231218-22:06:05,633 nipype.workflow INFO:
[Job 88] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.fsnative2t1w_xfm).
231218-22:06:05,636 nipype.workflow INFO:
[Job 89] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:06:07,482 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 298 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:07,633 nipype.workflow INFO:
[Job 91] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:06:07,637 nipype.workflow INFO:
[Job 93] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.init_aff).
231218-22:06:09,484 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 297 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:09,637 nipype.workflow INFO:
[Job 94] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.mrg_target).
231218-22:06:09,640 nipype.workflow INFO:
[Job 95] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.t1w2fsnative_xfm).
231218-22:06:11,636 nipype.workflow INFO:
[Job 96] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_inv).
231218-22:06:11,639 nipype.workflow INFO:
[Job 97] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:06:13,640 nipype.workflow INFO:
[Job 100] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:06:13,646 nipype.workflow INFO:
[Job 103] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.norm).
231218-22:06:15,490 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 298 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:15,641 nipype.workflow INFO:
[Job 104] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.lta2itk_fwd).
231218-22:06:15,645 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_fsnative_t1w" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_fsnative_t1w".
231218-22:06:15,649 nipype.workflow INFO:
[Node] Executing "ds_fsnative_t1w" <smriprep.interfaces.DerivativesDataSink>
231218-22:06:15,655 nipype.workflow INFO:
[Node] Finished "ds_fsnative_t1w", elapsed time 0.004709s.
231218-22:06:15,657 nipype.workflow INFO:
[Job 105] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_fsnative_t1w).
231218-22:06:15,810 nipype.workflow INFO:
[Job 106] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:06:17,492 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 297 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:17,643 nipype.workflow INFO:
[Job 109] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:06:17,649 nipype.workflow INFO:
[Job 112] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.map_brainmask).
231218-22:06:19,651 nipype.workflow INFO:
[Job 113] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.map_wmmask).
231218-22:06:19,655 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsnative" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_fsnative".
231218-22:06:19,658 nipype.workflow INFO:
[Node] Executing "ds_t1w_fsnative" <smriprep.interfaces.DerivativesDataSink>
231218-22:06:19,664 nipype.workflow INFO:
[Node] Finished "ds_t1w_fsnative", elapsed time 0.003876s.
231218-22:06:19,666 nipype.workflow INFO:
[Job 114] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsnative).
231218-22:06:19,796 nipype.workflow INFO:
[Job 115] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:06:21,494 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 296 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:21,623 nipype.workflow INFO:
[Job 117] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:06:21,625 nipype.workflow INFO:
[Job 119] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.thr_brainmask).
231218-22:06:23,496 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 297 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:23,627 nipype.workflow INFO:
[Job 120] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.inu_n4_final).
231218-22:06:23,630 nipype.workflow INFO:
[Job 121] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:06:25,628 nipype.workflow INFO:
[Job 123] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:06:25,630 nipype.workflow INFO:
[Job 125] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.dil_brainmask).
231218-22:06:27,627 nipype.workflow INFO:
[Job 126] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.03_pad_mask).
231218-22:06:27,630 nipype.workflow INFO:
[Job 127] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.apply_mask).
231218-22:06:29,500 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 295 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:29,628 nipype.workflow INFO:
[Job 128] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:06:29,630 nipype.workflow INFO:
[Job 130] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:06:31,631 nipype.workflow INFO:
[Job 132] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.get_brainmask).
231218-22:06:31,634 nipype.workflow INFO:
[Job 133] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:06:33,633 nipype.workflow INFO:
[Job 135] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:06:33,636 nipype.workflow INFO:
[Job 137] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.01_atropos).
231218-22:06:35,506 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 296 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:35,636 nipype.workflow INFO:
[Job 138] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:06:35,639 nipype.workflow INFO:
[Job 140] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:06:37,638 nipype.workflow INFO:
[Job 142] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.02_pad_segm).
231218-22:06:37,641 nipype.workflow INFO:
[Job 143] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.match_wm).
231218-22:06:39,633 nipype.workflow INFO:
[Job 144] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:06:39,635 nipype.workflow INFO:
[Job 147] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.initial_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:06:41,512 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 294 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:41,639 nipype.workflow INFO:
[Job 150] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.04_sel_labels).
231218-22:06:41,642 nipype.workflow INFO:
[Job 151] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.overlap).
231218-22:06:43,514 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 297 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:43,643 nipype.workflow INFO:
[Job 154] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.05_get_wm).
231218-22:06:43,645 nipype.workflow INFO:
[Job 155] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.06_get_gm).
231218-22:06:45,644 nipype.workflow INFO:
[Job 156] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.10_me_csf).
231218-22:06:45,647 nipype.workflow INFO:
[Job 157] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.27_depad_csf).
231218-22:06:47,517 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 295 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:47,646 nipype.workflow INFO:
[Job 158] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.sel_wm).
231218-22:06:47,648 nipype.workflow INFO:
[Job 161] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.09_relabel_wm).
231218-22:06:49,639 nipype.workflow INFO:
[Job 162] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.07_fill_gm).
231218-22:06:49,642 nipype.workflow INFO:
[Job 163] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform_wm).
231218-22:06:51,672 nipype.workflow INFO:
[Job 166] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.26_depad_wm).
231218-22:06:51,675 nipype.workflow INFO:
[Job 167] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.08_mult_gm).
231218-22:06:53,524 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 294 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:53,679 nipype.workflow INFO:
[Job 168] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.apply_wm_prior).
231218-22:06:53,682 nipype.workflow INFO:
[Job 171] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.11_add_gm).
231218-22:06:55,681 nipype.workflow INFO:
[Job 172] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.inu_n4_final).
231218-22:06:55,683 nipype.workflow INFO:
[Job 175] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.12_relabel_gm).
231218-22:06:57,679 nipype.workflow INFO:
[Job 178] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.13_add_gm_wm).
231218-22:06:57,682 nipype.workflow INFO:
[Job 179] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.25_depad_gm).
231218-22:06:59,530 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 295 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:06:59,682 nipype.workflow INFO:
[Job 182] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.14_sel_labels2).
231218-22:06:59,685 nipype.workflow INFO:
[Job 183] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.24_depad_segm).
231218-22:07:01,532 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 294 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:01,685 nipype.workflow INFO:
[Job 184] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.merge_tpms).
231218-22:07:01,688 nipype.workflow INFO:
[Job 191] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.15_add_7).
231218-22:07:03,534 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 293 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:03,686 nipype.workflow INFO:
[Job 198] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.16_me_7).
231218-22:07:03,688 nipype.workflow INFO:
[Job 527] Cached (_threshold0).
231218-22:07:05,536 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 292 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:05,689 nipype.workflow INFO:
[Job 201] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.17_comp_7).
231218-22:07:05,691 nipype.workflow INFO:
[Job 528] Cached (_threshold1).
231218-22:07:07,537 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 291 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:07,691 nipype.workflow INFO:
[Job 202] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.18_md_7).
231218-22:07:07,693 nipype.workflow INFO:
[Job 529] Cached (_threshold2).
231218-22:07:09,539 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 290 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:09,691 nipype.workflow INFO:
[Job 203] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.19_fill_7).
231218-22:07:09,693 nipype.workflow INFO:
[Job 530] Cached (_threshold3).
231218-22:07:11,541 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 289 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:11,692 nipype.workflow INFO:
[Job 204] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.20_add_7_2).
231218-22:07:11,694 nipype.workflow INFO:
[Job 531] Cached (_threshold4).
231218-22:07:13,543 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 288 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:13,695 nipype.workflow INFO:
[Job 205] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.21_md_7_2).
231218-22:07:13,697 nipype.workflow INFO:
[Job 532] Cached (_threshold5).
231218-22:07:15,544 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 287 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:15,695 nipype.workflow INFO:
[Job 206] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.22_me_7_2).
231218-22:07:15,697 nipype.workflow INFO:
[Job 533] Cached (_threshold6).
231218-22:07:17,546 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 286 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:17,698 nipype.workflow INFO:
[Job 207] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.23_depad_mask).
231218-22:07:17,700 nipype.workflow INFO:
[Job 534] Cached (_threshold7).
231218-22:07:19,548 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 285 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:19,701 nipype.workflow INFO:
[Job 208] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.msk_conform).
231218-22:07:19,703 nipype.workflow INFO:
[Job 535] Cached (_threshold8).
231218-22:07:21,550 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 284 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:21,703 nipype.workflow INFO:
[Job 209] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.copy_xform).
231218-22:07:21,705 nipype.workflow INFO:
[Job 536] Cached (_threshold9).
231218-22:07:23,552 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 286 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:23,692 nipype.workflow INFO:
[Job 210] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.brain_extraction_wf.atropos_wf.apply_mask).
231218-22:07:23,696 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_preproc" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_preproc".
231218-22:07:23,699 nipype.workflow INFO:
[Node] Executing "ds_t1w_preproc" <smriprep.interfaces.DerivativesDataSink>
231218-22:07:25,539 nipype.workflow INFO:
[Node] Finished "ds_t1w_preproc", elapsed time 1.838519s.
231218-22:07:25,541 nipype.workflow INFO:
[Job 211] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_preproc).
231218-22:07:25,677 nipype.workflow INFO:
[Job 212] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.gen_ref).
231218-22:07:25,682 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 284 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:25,813 nipype.workflow INFO:
[Job 213] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.trunc_mov).
231218-22:07:26,814 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/skull_strip_extern".
231218-22:07:26,816 nipype.workflow INFO:
[Node] Executing "skull_strip_extern" <niworkflows.interfaces.freesurfer.FSInjectBrainExtracted>
231218-22:07:27,219 nipype.workflow INFO:
[Node] Finished "skull_strip_extern", elapsed time 0.402319s.
231218-22:07:27,682 nipype.workflow INFO:
[Job 214] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.skull_strip_extern).
231218-22:07:27,685 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 283 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:27,816 nipype.workflow INFO:
[Job 537] Cached (_threshold10).
231218-22:07:27,816 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon2_vol".
231218-22:07:27,819 nipype.workflow INFO:
[Node] Executing "autorecon2_vol" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:07:27,820 nipype.interface INFO:
recon-all complete : Not running
231218-22:07:27,821 nipype.interface INFO:
recon-all complete : Not running
231218-22:07:27,957 nipype.workflow INFO:
[Node] Finished "autorecon2_vol", elapsed time 0.137099s.
231218-22:07:29,684 nipype.workflow INFO:
[Job 215] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon2_vol).
231218-22:07:29,687 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 282 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:29,826 nipype.workflow INFO:
[Job 538] Cached (_threshold11).
231218-22:07:29,827 nipype.workflow INFO:
[Job 539] Cached (_threshold12).
231218-22:07:31,688 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 281 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:31,821 nipype.workflow INFO:
[Job 540] Cached (_threshold13).
231218-22:07:31,822 nipype.workflow INFO:
[Job 541] Cached (_threshold14).
231218-22:07:33,690 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 279 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:33,820 nipype.workflow INFO:
[Job 542] Cached (_threshold15).
231218-22:07:33,822 nipype.workflow INFO:
[Job 543] Cached (_threshold16).
231218-22:07:35,692 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 277 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:35,821 nipype.workflow INFO:
[Job 544] Cached (_threshold17).
231218-22:07:35,822 nipype.workflow INFO:
[Job 545] Cached (_threshold18).
231218-22:07:37,694 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 275 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:37,823 nipype.workflow INFO:
[Job 546] Cached (_threshold19).
231218-22:07:37,824 nipype.workflow INFO:
[Job 547] Cached (_threshold20).
231218-22:07:39,696 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 273 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:39,826 nipype.workflow INFO:
[Job 548] Cached (_threshold21).
231218-22:07:39,827 nipype.workflow INFO:
[Job 549] Cached (_threshold22).
231218-22:07:41,698 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 271 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:41,826 nipype.workflow INFO:
[Job 550] Cached (_threshold23).
231218-22:07:41,827 nipype.workflow INFO:
[Job 551] Cached (_threshold24).
231218-22:07:43,700 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 269 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:43,828 nipype.workflow INFO:
[Job 552] Cached (_threshold25).
231218-22:07:43,829 nipype.workflow INFO:
[Job 553] Cached (_threshold26).
231218-22:07:45,702 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 267 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:45,834 nipype.workflow INFO:
[Job 554] Cached (_threshold27).
231218-22:07:45,835 nipype.workflow INFO:
[Job 555] Cached (_threshold28).
231218-22:07:47,704 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 265 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:47,835 nipype.workflow INFO:
[Job 556] Cached (_threshold29).
231218-22:07:47,836 nipype.workflow INFO:
[Job 557] Cached (_threshold30).
231218-22:07:49,705 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 263 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:49,836 nipype.workflow INFO:
[Job 558] Cached (_threshold31).
231218-22:07:49,837 nipype.workflow INFO:
[Job 559] Cached (_threshold32).
231218-22:07:51,707 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 261 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:51,839 nipype.workflow INFO:
[Job 560] Cached (_threshold33).
231218-22:07:51,840 nipype.workflow INFO:
[Job 561] Cached (_threshold34).
231218-22:07:53,709 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 259 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:53,838 nipype.workflow INFO:
[Job 562] Cached (_threshold35).
231218-22:07:53,839 nipype.workflow INFO:
[Job 563] Cached (_threshold36).
231218-22:07:55,711 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 257 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:55,842 nipype.workflow INFO:
[Job 564] Cached (_threshold37).
231218-22:07:55,843 nipype.workflow INFO:
[Job 565] Cached (_threshold38).
231218-22:07:57,713 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 255 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:57,842 nipype.workflow INFO:
[Job 566] Cached (_threshold39).
231218-22:07:57,843 nipype.workflow INFO:
[Job 567] Cached (_threshold40).
231218-22:07:59,715 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 253 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:07:59,848 nipype.workflow INFO:
[Job 568] Cached (_threshold41).
231218-22:07:59,849 nipype.workflow INFO:
[Job 569] Cached (_threshold42).
231218-22:08:01,717 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 251 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:01,856 nipype.workflow INFO:
[Job 570] Cached (_threshold43).
231218-22:08:01,858 nipype.workflow INFO:
[Job 571] Cached (_threshold44).
231218-22:08:03,719 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 249 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:03,874 nipype.workflow INFO:
[Job 572] Cached (_threshold45).
231218-22:08:03,875 nipype.workflow INFO:
[Job 573] Cached (_threshold46).
231218-22:08:05,721 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 247 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:05,870 nipype.workflow INFO:
[Job 574] Cached (_threshold47).
231218-22:08:05,871 nipype.workflow INFO:
[Job 575] Cached (_threshold48).
231218-22:08:07,723 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 245 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:07,853 nipype.workflow INFO:
[Job 576] Cached (_threshold49).
231218-22:08:07,854 nipype.workflow INFO:
[Job 577] Cached (_threshold50).
231218-22:08:09,723 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 243 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:09,858 nipype.workflow INFO:
[Job 578] Cached (_threshold51).
231218-22:08:09,859 nipype.workflow INFO:
[Job 579] Cached (_threshold52).
231218-22:08:11,725 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 241 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:11,859 nipype.workflow INFO:
[Job 580] Cached (_threshold53).
231218-22:08:11,860 nipype.workflow INFO:
[Job 581] Cached (_threshold54).
231218-22:08:13,727 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 239 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:13,860 nipype.workflow INFO:
[Job 582] Cached (_threshold55).
231218-22:08:13,861 nipype.workflow INFO:
[Job 583] Cached (_threshold56).
231218-22:08:15,730 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 237 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:15,862 nipype.workflow INFO:
[Job 584] Cached (_threshold57).
231218-22:08:15,863 nipype.workflow INFO:
[Job 585] Cached (_threshold58).
231218-22:08:17,732 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 235 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:17,864 nipype.workflow INFO:
[Job 586] Cached (_threshold59).
231218-22:08:17,865 nipype.workflow INFO:
[Job 587] Cached (_threshold60).
231218-22:08:19,734 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 233 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:19,864 nipype.workflow INFO:
[Job 588] Cached (_threshold61).
231218-22:08:19,865 nipype.workflow INFO:
[Job 589] Cached (_threshold62).
231218-22:08:21,735 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 231 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:08:21,866 nipype.workflow INFO:
[Job 590] Cached (_threshold63).
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[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_native_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_native_ref".
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[Node] Executing "ds_bold_native_ref" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "ds_bold_native_ref", elapsed time 0.088905s.
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[Job 146] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_native_ref).
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[Job 176] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:10:16,2 nipype.workflow INFO:
[Job 687] Cached (_threshold14).
231218-22:10:17,847 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 134 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 180] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks).
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[Job 688] Cached (_threshold15).
231218-22:10:19,849 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 135 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 185] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:10:19,999 nipype.workflow INFO:
[Job 186] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.dvars).
231218-22:10:22,8 nipype.workflow INFO:
[Job 187] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.tcompcor).
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[Job 192] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.add_dvars_header).
231218-22:10:23,853 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 134 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 193] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.add_std_dvars_header).
231218-22:10:24,9 nipype.workflow INFO:
[Job 194] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_filter).
231218-22:10:25,855 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 133 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 199] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.tcc_metadata_fmt).
231218-22:10:26,12 nipype.workflow INFO:
[Job 689] Cached (_threshold16).
231218-22:10:27,856 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 131 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 690] Cached (_threshold17).
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[MultiProc] Running 0 tasks, and 129 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 692] Cached (_threshold19).
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[MultiProc] Running 0 tasks, and 127 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 694] Cached (_threshold21).
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[MultiProc] Running 0 tasks, and 125 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 696] Cached (_threshold23).
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[MultiProc] Running 0 tasks, and 123 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:35,991 nipype.workflow INFO:
[Job 698] Cached (_threshold25).
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[MultiProc] Running 0 tasks, and 121 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:37,991 nipype.workflow INFO:
[Job 700] Cached (_threshold27).
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[Job 701] Cached (_threshold28).
231218-22:10:39,864 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 119 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:39,994 nipype.workflow INFO:
[Job 702] Cached (_threshold29).
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[Job 703] Cached (_threshold30).
231218-22:10:41,866 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 117 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:41,996 nipype.workflow INFO:
[Job 704] Cached (_threshold31).
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[Job 705] Cached (_threshold32).
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[MultiProc] Running 0 tasks, and 115 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:43,995 nipype.workflow INFO:
[Job 706] Cached (_threshold33).
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[Job 707] Cached (_threshold34).
231218-22:10:45,870 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 113 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:45,997 nipype.workflow INFO:
[Job 708] Cached (_threshold35).
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[Job 709] Cached (_threshold36).
231218-22:10:47,872 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 111 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:48,1 nipype.workflow INFO:
[Job 710] Cached (_threshold37).
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[Job 711] Cached (_threshold38).
231218-22:10:49,874 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 109 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:50,3 nipype.workflow INFO:
[Job 712] Cached (_threshold39).
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[Job 713] Cached (_threshold40).
231218-22:10:51,876 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 107 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:52,7 nipype.workflow INFO:
[Job 714] Cached (_threshold41).
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[Job 715] Cached (_threshold42).
231218-22:10:53,878 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 105 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:53,999 nipype.workflow INFO:
[Job 716] Cached (_threshold43).
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[Job 717] Cached (_threshold44).
231218-22:10:55,880 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 103 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:10:56,8 nipype.workflow INFO:
[Job 718] Cached (_threshold45).
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[Job 719] Cached (_threshold46).
231218-22:10:57,882 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 101 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 720] Cached (_threshold47).
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[Job 721] Cached (_threshold48).
231218-22:10:59,884 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 99 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:00,35 nipype.workflow INFO:
[Job 722] Cached (_threshold49).
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[Job 723] Cached (_threshold50).
231218-22:11:01,886 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 97 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:02,43 nipype.workflow INFO:
[Job 724] Cached (_threshold51).
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[Job 725] Cached (_threshold52).
231218-22:11:03,889 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 95 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:04,41 nipype.workflow INFO:
[Job 726] Cached (_threshold53).
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[Job 727] Cached (_threshold54).
231218-22:11:05,891 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 93 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:06,43 nipype.workflow INFO:
[Job 728] Cached (_threshold55).
231218-22:11:06,44 nipype.workflow INFO:
[Job 729] Cached (_threshold56).
231218-22:11:07,893 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 91 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:08,43 nipype.workflow INFO:
[Job 730] Cached (_threshold57).
231218-22:11:08,44 nipype.workflow INFO:
[Job 731] Cached (_threshold58).
231218-22:11:09,894 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 89 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:10,46 nipype.workflow INFO:
[Job 732] Cached (_threshold59).
231218-22:11:10,47 nipype.workflow INFO:
[Job 733] Cached (_threshold60).
231218-22:11:11,897 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 87 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:12,49 nipype.workflow INFO:
[Job 734] Cached (_threshold61).
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[Job 735] Cached (_threshold62).
231218-22:11:13,899 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 85 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:14,43 nipype.workflow INFO:
[Job 736] Cached (_threshold63).
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[Job 737] Cached (_threshold64).
231218-22:11:15,900 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 83 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:16,52 nipype.workflow INFO:
[Job 738] Cached (_threshold65).
231218-22:11:16,53 nipype.workflow INFO:
[Job 739] Cached (_threshold66).
231218-22:11:17,902 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 81 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:18,55 nipype.workflow INFO:
[Job 740] Cached (_threshold67).
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[Job 741] Cached (_threshold68).
231218-22:11:19,904 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 79 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:20,56 nipype.workflow INFO:
[Job 742] Cached (_threshold69).
231218-22:11:20,58 nipype.workflow INFO:
[Job 743] Cached (_threshold70).
231218-22:11:21,906 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 77 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:22,62 nipype.workflow INFO:
[Job 744] Cached (_threshold71).
231218-22:11:22,63 nipype.workflow INFO:
[Job 745] Cached (_threshold72).
231218-22:11:23,909 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 75 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:24,62 nipype.workflow INFO:
[Job 746] Cached (_threshold73).
231218-22:11:24,63 nipype.workflow INFO:
[Job 747] Cached (_threshold74).
231218-22:11:25,910 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 73 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:26,62 nipype.workflow INFO:
[Job 748] Cached (_threshold75).
231218-22:11:26,63 nipype.workflow INFO:
[Job 749] Cached (_threshold76).
231218-22:11:27,913 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 71 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:28,70 nipype.workflow INFO:
[Job 750] Cached (_threshold77).
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[Job 751] Cached (_threshold78).
231218-22:11:29,913 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 69 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:30,54 nipype.workflow INFO:
[Job 752] Cached (_threshold79).
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[Job 753] Cached (_threshold80).
231218-22:11:31,915 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 67 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:32,44 nipype.workflow INFO:
[Job 754] Cached (_threshold81).
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[Job 755] Cached (_threshold82).
231218-22:11:33,917 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 65 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:34,46 nipype.workflow INFO:
[Job 756] Cached (_threshold83).
231218-22:11:34,47 nipype.workflow INFO:
[Job 757] Cached (_threshold84).
231218-22:11:35,919 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 63 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:36,49 nipype.workflow INFO:
[Job 758] Cached (_threshold85).
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[Job 759] Cached (_threshold86).
231218-22:11:37,921 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 61 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:38,51 nipype.workflow INFO:
[Job 760] Cached (_threshold87).
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[Job 761] Cached (_threshold88).
231218-22:11:39,923 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 59 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:40,56 nipype.workflow INFO:
[Job 762] Cached (_threshold89).
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[Job 763] Cached (_threshold90).
231218-22:11:41,924 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 57 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:42,55 nipype.workflow INFO:
[Job 764] Cached (_threshold91).
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[Job 765] Cached (_threshold92).
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[MultiProc] Running 0 tasks, and 55 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:44,58 nipype.workflow INFO:
[Job 766] Cached (_threshold93).
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[Job 767] Cached (_threshold94).
231218-22:11:45,928 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 53 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:46,57 nipype.workflow INFO:
[Job 768] Cached (_threshold95).
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[Job 769] Cached (_threshold96).
231218-22:11:47,930 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 51 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:48,59 nipype.workflow INFO:
[Job 770] Cached (_threshold97).
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[Job 771] Cached (_threshold98).
231218-22:11:49,932 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 49 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:50,68 nipype.workflow INFO:
[Job 772] Cached (_threshold99).
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[Job 773] Cached (_threshold100).
231218-22:11:51,934 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 47 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:52,64 nipype.workflow INFO:
[Job 774] Cached (_threshold101).
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[Job 775] Cached (_threshold102).
231218-22:11:53,936 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 45 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:54,65 nipype.workflow INFO:
[Job 776] Cached (_threshold103).
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[Job 777] Cached (_threshold104).
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[MultiProc] Running 0 tasks, and 43 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:56,69 nipype.workflow INFO:
[Job 778] Cached (_threshold105).
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[Job 779] Cached (_threshold106).
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[MultiProc] Running 0 tasks, and 41 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:11:58,79 nipype.workflow INFO:
[Job 780] Cached (_threshold107).
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[Job 781] Cached (_threshold108).
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[MultiProc] Running 0 tasks, and 39 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:00,70 nipype.workflow INFO:
[Job 782] Cached (_threshold109).
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[Job 783] Cached (_threshold110).
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[MultiProc] Running 0 tasks, and 37 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:02,74 nipype.workflow INFO:
[Job 784] Cached (_threshold111).
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[Job 785] Cached (_threshold112).
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[MultiProc] Running 0 tasks, and 35 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:04,74 nipype.workflow INFO:
[Job 786] Cached (_threshold113).
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[Job 787] Cached (_threshold114).
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[MultiProc] Running 0 tasks, and 33 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:06,82 nipype.workflow INFO:
[Job 788] Cached (_threshold115).
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[Job 789] Cached (_threshold116).
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[MultiProc] Running 0 tasks, and 31 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:08,78 nipype.workflow INFO:
[Job 790] Cached (_threshold117).
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[Job 791] Cached (_threshold118).
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[MultiProc] Running 0 tasks, and 29 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:10,80 nipype.workflow INFO:
[Job 792] Cached (_threshold119).
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[Job 793] Cached (_threshold120).
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[MultiProc] Running 0 tasks, and 27 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:12,82 nipype.workflow INFO:
[Job 794] Cached (_threshold121).
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[Job 795] Cached (_threshold122).
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[MultiProc] Running 0 tasks, and 25 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:14,80 nipype.workflow INFO:
[Job 796] Cached (_threshold123).
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[Job 797] Cached (_threshold124).
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[MultiProc] Running 0 tasks, and 23 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:16,91 nipype.workflow INFO:
[Job 798] Cached (_threshold125).
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[Job 799] Cached (_threshold126).
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[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:18,83 nipype.workflow INFO:
[Job 800] Cached (_threshold127).
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[Job 801] Cached (_threshold128).
231218-22:12:19,960 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:20,92 nipype.workflow INFO:
[Job 802] Cached (_threshold129).
231218-22:12:20,94 nipype.workflow INFO:
[Job 803] Cached (_threshold130).
231218-22:12:21,962 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:22,97 nipype.workflow INFO:
[Job 804] Cached (_threshold131).
231218-22:12:22,98 nipype.workflow INFO:
[Job 805] Cached (_threshold132).
231218-22:12:23,964 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:24,95 nipype.workflow INFO:
[Job 806] Cached (_threshold133).
231218-22:12:24,96 nipype.workflow INFO:
[Job 807] Cached (_threshold134).
231218-22:12:25,966 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:26,98 nipype.workflow INFO:
[Job 808] Cached (_threshold135).
231218-22:12:26,99 nipype.workflow INFO:
[Job 809] Cached (_threshold136).
231218-22:12:27,968 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:28,101 nipype.workflow INFO:
[Job 810] Cached (_threshold137).
231218-22:12:28,102 nipype.workflow INFO:
[Job 811] Cached (_threshold138).
231218-22:12:29,970 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 9 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:30,127 nipype.workflow INFO:
[Job 812] Cached (_threshold139).
231218-22:12:30,128 nipype.workflow INFO:
[Job 813] Cached (_threshold140).
231218-22:12:31,971 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:32,123 nipype.workflow INFO:
[Job 814] Cached (_threshold141).
231218-22:12:32,124 nipype.workflow INFO:
[Job 815] Cached (_threshold142).
231218-22:12:33,973 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:34,126 nipype.workflow INFO:
[Job 816] Cached (_threshold143).
231218-22:12:34,127 nipype.workflow INFO:
[Job 817] Cached (_threshold144).
231218-22:12:35,975 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:36,112 nipype.workflow INFO:
[Job 818] Cached (_threshold145).
231218-22:12:36,116 nipype.workflow INFO:
[Node] Setting-up "_autorecon_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0".
231218-22:12:36,119 nipype.workflow INFO:
[Node] Executing "_autorecon_surfs0" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:12:36,120 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:36,121 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:36,251 nipype.workflow INFO:
[Node] Finished "_autorecon_surfs0", elapsed time 0.130802s.
231218-22:12:37,975 nipype.workflow INFO:
[Job 819] Completed (_autorecon_surfs0).
231218-22:12:37,977 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:38,119 nipype.workflow INFO:
[Job 85] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_bold_trans_wf.threshold).
231218-22:12:38,123 nipype.workflow INFO:
[Node] Setting-up "_autorecon_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1".
231218-22:12:38,126 nipype.workflow INFO:
[Node] Executing "_autorecon_surfs1" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:12:38,127 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:38,128 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:38,261 nipype.workflow INFO:
[Node] Finished "_autorecon_surfs1", elapsed time 0.133369s.
231218-22:12:39,976 nipype.workflow INFO:
[Job 820] Completed (_autorecon_surfs1).
231218-22:12:39,979 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:40,130 nipype.workflow INFO:
[Job 92] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_bold_trans_wf.merge).
231218-22:12:40,145 nipype.workflow INFO:
[Node] Setting-up "_autorecon_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs0".
231218-22:12:40,147 nipype.workflow INFO:
[Node] Executing "_autorecon_surfs0" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:12:40,149 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:40,149 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:40,283 nipype.workflow INFO:
[Node] Finished "_autorecon_surfs0", elapsed time 0.134444s.
231218-22:12:40,289 nipype.workflow INFO:
[Node] Setting-up "_autorecon_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon_surfs/mapflow/_autorecon_surfs1".
231218-22:12:40,291 nipype.workflow INFO:
[Node] Executing "_autorecon_surfs1" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:12:40,293 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:40,293 nipype.interface INFO:
recon-all complete : Not running
231218-22:12:40,423 nipype.workflow INFO:
[Node] Finished "_autorecon_surfs1", elapsed time 0.130888s.
231218-22:12:41,978 nipype.workflow INFO:
[Job 216] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon_surfs).
231218-22:12:41,981 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:42,115 nipype.workflow INFO:
[Job 101] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.val_bold).
231218-22:12:42,117 nipype.workflow INFO:
[Job 102] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.get_dummy).
231218-22:12:44,112 nipype.workflow INFO:
[Job 110] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.calc_dummy_scans).
231218-22:12:44,116 nipype.workflow INFO:
[Job 111] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.gen_avg).
231218-22:12:45,983 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:46,114 nipype.workflow INFO:
[Job 118] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.init_aff).
231218-22:12:48,118 nipype.workflow INFO:
[Job 124] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.norm).
231218-22:12:50,118 nipype.workflow INFO:
[Job 131] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.map_brainmask).
231218-22:12:52,120 nipype.workflow INFO:
[Job 136] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.check_hdr).
231218-22:12:54,120 nipype.workflow INFO:
[Job 141] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:12:55,992 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:56,124 nipype.workflow INFO:
[Job 148] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:12:56,126 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_native_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_native_ref".
231218-22:12:56,129 nipype.workflow INFO:
[Node] Executing "ds_bold_native_ref" <fmriprep.interfaces.DerivativesDataSink>
231218-22:12:56,219 nipype.workflow INFO:
[Node] Finished "ds_bold_native_ref", elapsed time 0.088025s.
231218-22:12:56,221 nipype.workflow INFO:
[Job 149] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_native_ref).
231218-22:12:57,994 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:12:58,126 nipype.workflow INFO:
[Job 153] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:13:00,133 nipype.workflow INFO:
[Job 160] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:13:02,133 nipype.workflow INFO:
[Job 165] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:13:04,131 nipype.workflow INFO:
[Job 170] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:13:06,130 nipype.workflow INFO:
[Job 174] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:13:08,134 nipype.workflow INFO:
[Job 177] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:13:10,137 nipype.workflow INFO:
[Job 181] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:13:12,7 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:12,136 nipype.workflow INFO:
[Job 188] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.final_boldref_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:13:12,139 nipype.workflow INFO:
[Job 189] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.dvars).
231218-22:13:14,139 nipype.workflow INFO:
[Job 190] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.tcompcor).
231218-22:13:14,141 nipype.workflow INFO:
[Job 195] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.add_dvars_header).
231218-22:13:16,11 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:16,139 nipype.workflow INFO:
[Job 196] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.add_std_dvars_header).
231218-22:13:16,142 nipype.workflow INFO:
[Job 197] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_filter).
231218-22:13:18,13 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:18,144 nipype.workflow INFO:
[Job 200] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.tcc_metadata_fmt).
231218-22:13:20,15 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:20,154 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.cortribbon" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/cortribbon".
231218-22:13:20,156 nipype.workflow INFO:
[Node] Executing "cortribbon" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:13:20,158 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:20,158 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:20,292 nipype.workflow INFO:
[Node] Finished "cortribbon", elapsed time 0.134303s.
231218-22:13:22,16 nipype.workflow INFO:
[Job 217] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.cortribbon).
231218-22:13:22,18 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:24,19 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 2 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:24,149 nipype.workflow INFO:
[Node] Setting-up "_parcstats0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats0".
231218-22:13:24,152 nipype.workflow INFO:
[Node] Executing "_parcstats0" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:13:24,154 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:24,154 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:24,287 nipype.workflow INFO:
[Node] Finished "_parcstats0", elapsed time 0.134139s.
231218-22:13:24,292 nipype.workflow INFO:
[Node] Setting-up "_parcstats1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats1".
231218-22:13:24,294 nipype.workflow INFO:
[Node] Executing "_parcstats1" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:13:24,296 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:24,296 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:24,426 nipype.workflow INFO:
[Node] Finished "_parcstats1", elapsed time 0.130347s.
231218-22:13:26,20 nipype.workflow INFO:
[Job 821] Completed (_parcstats0).
231218-22:13:26,20 nipype.workflow INFO:
[Job 822] Completed (_parcstats1).
231218-22:13:26,22 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:26,170 nipype.workflow INFO:
[Node] Setting-up "_parcstats0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats0".
231218-22:13:26,173 nipype.workflow INFO:
[Node] Executing "_parcstats0" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:13:26,174 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:26,175 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:26,302 nipype.workflow INFO:
[Node] Finished "_parcstats0", elapsed time 0.12823s.
231218-22:13:26,308 nipype.workflow INFO:
[Node] Setting-up "_parcstats1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/parcstats/mapflow/_parcstats1".
231218-22:13:26,310 nipype.workflow INFO:
[Node] Executing "_parcstats1" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:13:26,311 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:26,312 nipype.interface INFO:
recon-all complete : Not running
231218-22:13:26,447 nipype.workflow INFO:
[Node] Finished "_parcstats1", elapsed time 0.135562s.
231218-22:13:28,22 nipype.workflow INFO:
[Job 218] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.parcstats).
231218-22:13:28,24 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:28,161 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/autorecon_resume_wf/autorecon3".
231218-22:13:28,164 nipype.workflow INFO:
[Node] Executing "autorecon3" <smriprep.interfaces.freesurfer.ReconAll>
231218-22:13:28,167 nipype.interface INFO:
resume recon-all : recon-all -autorecon3 -openmp 1 -subjid sub-08 -sd /home/jovyan/example-notebooks/books/functional_imaging/content/sourcedata/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels
231218-22:13:28,168 nipype.interface INFO:
resume recon-all : recon-all -autorecon3 -openmp 1 -subjid sub-08 -sd /home/jovyan/example-notebooks/books/functional_imaging/content/sourcedata/freesurfer -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -noparcstats -nocortparc2 -noparcstats2 -nocortparc3 -noparcstats3 -nopctsurfcon -nocortribbon -nohyporelabel -noaparc2aseg -nosegstats -nowmparc -nobalabels
231218-22:13:30,26 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 0 jobs ready. Free memory (GB): 5.00/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3
231218-22:13:35,649 nipype.workflow INFO:
[Node] Finished "autorecon3", elapsed time 7.483362s.
231218-22:13:36,30 nipype.workflow INFO:
[Job 219] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.autorecon_resume_wf.autorecon3).
231218-22:13:36,34 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:36,190 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/get_surfaces".
231218-22:13:36,192 nipype.workflow INFO:
[Node] Executing "get_surfaces" <nipype.interfaces.io.FreeSurferSource>
231218-22:13:36,193 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aseg/fs_datasource".
231218-22:13:36,195 nipype.workflow INFO:
[Node] Executing "fs_datasource" <nipype.interfaces.io.FreeSurferSource>
231218-22:13:36,204 nipype.workflow INFO:
[Node] Finished "fs_datasource", elapsed time 0.008209s.
231218-22:13:36,223 nipype.workflow INFO:
[Node] Finished "get_surfaces", elapsed time 0.017454s.
231218-22:13:38,32 nipype.workflow INFO:
[Job 220] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.get_surfaces).
231218-22:13:38,34 nipype.workflow INFO:
[Job 221] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.fs_datasource).
231218-22:13:38,37 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:13:38,191 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/segs_to_native_aparc_aseg/fs_datasource".
231218-22:13:38,194 nipype.workflow INFO:
[Node] Executing "fs_datasource" <nipype.interfaces.io.FreeSurferSource>
231218-22:13:38,203 nipype.workflow INFO:
[Node] Finished "fs_datasource", elapsed time 0.008318s.
231218-22:13:40,34 nipype.workflow INFO:
[Job 222] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.fs_datasource).
231218-22:13:40,38 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 13 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:13:40,201 nipype.workflow INFO:
[Job 224] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.mri_coreg).
231218-22:13:41,212 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_reports_wf/recon_report".
231218-22:13:41,216 nipype.workflow INFO:
[Node] Executing "recon_report" <smriprep.interfaces.reports.FSSurfaceReport>
231218-22:13:42,194 nipype.workflow INFO:
[Job 225] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.mri_coreg).
231218-22:13:44,194 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.get_fsnative" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/bold_surf_wf/get_fsnative".
231218-22:13:44,196 nipype.workflow INFO:
[Node] Executing "get_fsnative" <nipype.interfaces.io.FreeSurferSource>
231218-22:13:44,213 nipype.workflow INFO:
[Node] Finished "get_fsnative", elapsed time 0.015586s.
231218-22:13:44,216 nipype.workflow INFO:
[Job 226] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.get_fsnative).
231218-22:13:44,371 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.get_fsnative" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/bold_surf_wf/get_fsnative".
231218-22:13:44,373 nipype.workflow INFO:
[Node] Executing "get_fsnative" <nipype.interfaces.io.FreeSurferSource>
231218-22:13:44,386 nipype.workflow INFO:
[Node] Finished "get_fsnative", elapsed time 0.01166s.
231218-22:13:44,389 nipype.workflow INFO:
[Job 227] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.get_fsnative).
231218-22:13:44,546 nipype.workflow INFO:
[Job 228] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.targets).
231218-22:13:46,41 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 10 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:13:46,195 nipype.workflow INFO:
[Job 229] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.targets).
231218-22:13:48,43 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 9 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:13:48,198 nipype.workflow INFO:
[Job 230] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.targets).
231218-22:13:50,46 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 8 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:13:50,205 nipype.workflow INFO:
[Job 231] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.targets).
231218-22:13:52,47 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 7 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:13:52,204 nipype.workflow INFO:
[Job 233] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surfmorph_list).
231218-22:13:54,209 nipype.workflow INFO:
[Job 234] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aseg.resample).
231218-22:13:56,52 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 13 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:13:56,210 nipype.workflow INFO:
[Job 235] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.segs_to_native_aparc_aseg.resample).
231218-22:13:58,213 nipype.workflow INFO:
[Job 241] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.refine).
231218-22:14:00,55 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:00,217 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsaseg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_fsaseg".
231218-22:14:00,221 nipype.workflow INFO:
[Node] Executing "ds_t1w_fsaseg" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:00,254 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/anat/sub-08_desc-aseg_dseg.nii.gz dtype from float32 to int16
231218-22:14:01,548 nipype.workflow INFO:
[Node] Finished "ds_t1w_fsaseg", elapsed time 1.325729s.
231218-22:14:01,551 nipype.workflow INFO:
[Job 242] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsaseg).
231218-22:14:01,728 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsparc" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_fsparc".
231218-22:14:01,734 nipype.workflow INFO:
[Node] Executing "ds_t1w_fsparc" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:01,769 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/anat/sub-08_desc-aparcaseg_dseg.nii.gz dtype from float32 to int16
231218-22:14:02,716 nipype.workflow INFO:
[Node] Finished "ds_t1w_fsparc", elapsed time 0.980629s.
231218-22:14:02,719 nipype.workflow INFO:
[Job 243] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_fsparc).
231218-22:14:02,880 nipype.workflow INFO:
[Job 250] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.applyrefined).
231218-22:14:02,887 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:03,48 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_mask".
231218-22:14:03,52 nipype.workflow INFO:
[Node] Executing "ds_t1w_mask" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:03,515 nipype.workflow INFO:
[Node] Finished "ds_t1w_mask", elapsed time 0.461271s.
231218-22:14:03,517 nipype.workflow INFO:
[Job 251] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_mask).
231218-22:14:03,647 nipype.workflow INFO:
[Job 252] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.mask_t1w).
231218-22:14:04,887 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 14 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:05,23 nipype.workflow INFO:
[Job 253] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.t1w_brain).
231218-22:14:07,20 nipype.workflow INFO:
[Job 254] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.t1w_brain).
231218-22:14:09,29 nipype.workflow INFO:
[Job 255] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.registration).
231218-22:14:10,893 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 15 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:11,29 nipype.workflow INFO:
[Job 260] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.t1w_dseg).
231218-22:14:12,895 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 16 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:13,31 nipype.workflow INFO:
[Job 261] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.gen_ref).
231218-22:14:14,899 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:15,69 nipype.workflow INFO:
[Job 262] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.gen_ref).
231218-22:14:16,900 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 18 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:17,62 nipype.workflow INFO:
[Job 263] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.tpl_moving).
231218-22:14:18,902 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 17 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:19,62 nipype.workflow INFO:
[Job 264] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.std_mask).
231218-22:14:21,61 nipype.workflow INFO:
[Job 268] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.lut_t1w_dseg).
231218-22:14:22,906 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 19 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:23,62 nipype.workflow INFO:
[Job 269] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.fast2bids).
231218-22:14:24,907 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 22 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:25,44 nipype.workflow INFO:
[Job 270] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.aseg_t1w_tfm).
231218-22:14:26,909 nipype.workflow INFO:
[MultiProc] Running 1 tasks, and 24 jobs ready. Free memory (GB): 9.80/10.00, Free processors: 1/2.
Currently running:
* fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report
231218-22:14:27,46 nipype.workflow INFO:
[Job 271] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.aparc_t1w_tfm).
231218-22:14:28,399 nipype.workflow INFO:
[Node] Finished "recon_report", elapsed time 47.181092s.
231218-22:14:28,909 nipype.workflow INFO:
[Job 223] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.recon_report).
231218-22:14:28,912 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 25 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:29,47 nipype.workflow INFO:
[Node] Outdated cache found for "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report".
231218-22:14:29,47 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_reports_wf/ds_recon_report".
231218-22:14:29,47 nipype.workflow INFO:
[Node] Outdated cache found for "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report".
231218-22:14:29,50 nipype.workflow INFO:
[Node] Executing "ds_recon_report" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:29,57 nipype.workflow INFO:
[Node] Finished "ds_recon_report", elapsed time 0.00556s.
231218-22:14:29,59 nipype.workflow INFO:
[Job 236] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_recon_report).
231218-22:14:29,191 nipype.workflow INFO:
[Job 237] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.bbregister).
231218-22:14:30,912 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 25 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:31,45 nipype.workflow INFO:
[Job 238] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.bbregister).
231218-22:14:32,915 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 26 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:33,47 nipype.workflow INFO:
[Job 244] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.transforms).
231218-22:14:33,50 nipype.workflow INFO:
[Job 245] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.reports).
231218-22:14:34,917 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 25 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:35,48 nipype.workflow INFO:
[Job 246] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.transforms).
231218-22:14:35,51 nipype.workflow INFO:
[Job 247] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.reports).
231218-22:14:37,60 nipype.workflow INFO:
[Job 272] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.aseg_t1w_tfm).
231218-22:14:37,62 nipype.workflow INFO:
[Job 273] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.aparc_t1w_tfm).
231218-22:14:38,921 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 26 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:39,58 nipype.workflow INFO:
[Job 274] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.norm_msk).
231218-22:14:39,61 nipype.workflow INFO:
[Job 280] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.seg_rpt).
231218-22:14:41,54 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_dseg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_dseg".
231218-22:14:41,57 nipype.workflow INFO:
[Node] Executing "ds_t1w_dseg" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:42,859 nipype.workflow INFO:
[Node] Finished "ds_t1w_dseg", elapsed time 1.800469s.
231218-22:14:42,861 nipype.workflow INFO:
[Job 281] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_dseg).
231218-22:14:42,997 nipype.workflow INFO:
[Job 282] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.std_dseg).
231218-22:14:43,0 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_tpms" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w_tpms".
231218-22:14:43,3 nipype.workflow INFO:
[Node] Executing "ds_t1w_tpms" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:47,66 nipype.workflow INFO:
[Node] Finished "ds_t1w_tpms", elapsed time 4.061816s.
231218-22:14:47,69 nipype.workflow INFO:
[Job 283] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w_tpms).
231218-22:14:47,252 nipype.workflow INFO:
[Job 284] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acc_masks).
231218-22:14:47,257 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:47,437 nipype.workflow INFO:
[Job 285] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acc_masks).
231218-22:14:47,439 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aseg_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_aseg_t1".
231218-22:14:47,442 nipype.workflow INFO:
[Node] Executing "ds_bold_aseg_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:14:47,451 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-1_space-T1w_desc-aseg_dseg.nii.gz dtype from float64 to int16
231218-22:14:47,512 nipype.workflow INFO:
[Node] Finished "ds_bold_aseg_t1", elapsed time 0.068599s.
231218-22:14:47,514 nipype.workflow INFO:
[Job 287] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aseg_t1).
231218-22:14:47,647 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aparc_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_aparc_t1".
231218-22:14:47,650 nipype.workflow INFO:
[Node] Executing "ds_bold_aparc_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:14:47,659 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-1_space-T1w_desc-aparcaseg_dseg.nii.gz dtype from float64 to int16
231218-22:14:47,698 nipype.workflow INFO:
[Node] Finished "ds_bold_aparc_t1", elapsed time 0.046596s.
231218-22:14:47,700 nipype.workflow INFO:
[Job 288] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aparc_t1).
231218-22:14:47,834 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aseg_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_aseg_t1".
231218-22:14:47,837 nipype.workflow INFO:
[Node] Executing "ds_bold_aseg_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:14:47,846 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-2_space-T1w_desc-aseg_dseg.nii.gz dtype from float64 to int16
231218-22:14:47,907 nipype.workflow INFO:
[Node] Finished "ds_bold_aseg_t1", elapsed time 0.069159s.
231218-22:14:47,910 nipype.workflow INFO:
[Job 289] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aseg_t1).
231218-22:14:48,45 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aparc_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_aparc_t1".
231218-22:14:48,48 nipype.workflow INFO:
[Node] Executing "ds_bold_aparc_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:14:48,57 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-2_space-T1w_desc-aparcaseg_dseg.nii.gz dtype from float64 to int16
231218-22:14:48,96 nipype.workflow INFO:
[Node] Finished "ds_bold_aparc_t1", elapsed time 0.046763s.
231218-22:14:48,98 nipype.workflow INFO:
[Job 290] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aparc_t1).
231218-22:14:48,232 nipype.workflow INFO:
[Job 291] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.norm_rpt).
231218-22:14:49,259 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:49,390 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_dseg_mask_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_reports_wf/ds_t1w_dseg_mask_report".
231218-22:14:49,393 nipype.workflow INFO:
[Node] Executing "ds_t1w_dseg_mask_report" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:49,399 nipype.workflow INFO:
[Node] Finished "ds_t1w_dseg_mask_report", elapsed time 0.00501s.
231218-22:14:49,401 nipype.workflow INFO:
[Job 297] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_t1w_dseg_mask_report).
231218-22:14:49,532 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_std_t1w_report" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_reports_wf/_template_MNI152NLin2009cAsym/ds_std_t1w_report".
231218-22:14:49,535 nipype.workflow INFO:
[Node] Executing "ds_std_t1w_report" <smriprep.interfaces.DerivativesDataSink>
231218-22:14:49,541 nipype.workflow INFO:
[Node] Finished "ds_std_t1w_report", elapsed time 0.005016s.
231218-22:14:49,543 nipype.workflow INFO:
[Job 299] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_reports_wf.ds_std_t1w_report).
231218-22:14:49,673 nipype.workflow INFO:
[Node] Outdated cache found for "_midthickness0".
231218-22:14:49,675 nipype.workflow INFO:
[Node] Outdated cache found for "_midthickness1".
231218-22:14:49,676 nipype.workflow INFO:
[Node] Setting-up "_midthickness0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0".
231218-22:14:49,676 nipype.workflow INFO:
[Node] Outdated cache found for "_midthickness0".
231218-22:14:49,681 nipype.workflow INFO:
[Node] Executing "_midthickness0" <niworkflows.interfaces.freesurfer.MakeMidthickness>
231218-22:14:49,784 nipype.workflow INFO:
[Node] Setting-up "_midthickness1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1".
231218-22:14:49,785 nipype.workflow INFO:
[Node] Outdated cache found for "_midthickness1".
231218-22:14:49,789 nipype.workflow INFO:
[Node] Executing "_midthickness1" <niworkflows.interfaces.freesurfer.MakeMidthickness>
231218-22:14:49,828 nipype.workflow INFO:
[Node] Finished "_midthickness0", elapsed time 0.145792s.
231218-22:14:49,935 nipype.workflow INFO:
[Node] Finished "_midthickness1", elapsed time 0.145305s.
231218-22:14:51,257 nipype.workflow INFO:
[Job 823] Completed (_midthickness0).
231218-22:14:51,258 nipype.workflow INFO:
[Job 824] Completed (_midthickness1).
231218-22:14:51,260 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:51,403 nipype.workflow INFO:
[Node] Outdated cache found for "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness".
231218-22:14:51,406 nipype.workflow INFO:
[Job 825] Cached (_morphs2gii0).
231218-22:14:51,407 nipype.workflow INFO:
[Node] Outdated cache found for "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness".
231218-22:14:51,411 nipype.workflow INFO:
[Node] Setting-up "_midthickness0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness0".
231218-22:14:51,412 nipype.workflow INFO:
[Node] Cached "_midthickness0" - collecting precomputed outputs
231218-22:14:51,412 nipype.workflow INFO:
[Node] "_midthickness0" found cached.
231218-22:14:51,413 nipype.workflow INFO:
[Node] Setting-up "_midthickness1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/midthickness/mapflow/_midthickness1".
231218-22:14:51,414 nipype.workflow INFO:
[Node] Cached "_midthickness1" - collecting precomputed outputs
231218-22:14:51,414 nipype.workflow INFO:
[Node] "_midthickness1" found cached.
231218-22:14:53,259 nipype.workflow INFO:
[Job 232] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.midthickness).
231218-22:14:53,262 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 13 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:53,394 nipype.workflow INFO:
[Node] Outdated cache found for "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness".
231218-22:14:53,397 nipype.workflow INFO:
[Job 826] Cached (_morphs2gii1).
231218-22:14:53,397 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/surface_recon_wf/gifti_surface_wf/save_midthickness".
231218-22:14:53,397 nipype.workflow INFO:
[Node] Outdated cache found for "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness".
231218-22:14:53,400 nipype.workflow INFO:
[Node] Executing "save_midthickness" <nipype.interfaces.io.DataSink>
231218-22:14:53,482 nipype.workflow INFO:
[Node] Finished "save_midthickness", elapsed time 0.080757s.
231218-22:14:55,261 nipype.workflow INFO:
[Job 239] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.save_midthickness).
231218-22:14:55,264 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 12 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:55,397 nipype.workflow INFO:
[Job 248] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.surface_list).
231218-22:14:55,399 nipype.workflow INFO:
[Job 827] Cached (_morphs2gii2).
231218-22:14:57,265 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 11 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:57,408 nipype.workflow INFO:
[Job 828] Cached (_morphs2gii3).
231218-22:14:57,409 nipype.workflow INFO:
[Job 829] Cached (_morphs2gii4).
231218-22:14:59,267 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:14:59,399 nipype.workflow INFO:
[Job 830] Cached (_morphs2gii5).
231218-22:14:59,401 nipype.workflow INFO:
[Job 831] Cached (_std_tpms0).
231218-22:15:01,270 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:01,405 nipype.workflow INFO:
[Job 240] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.morphs2gii).
231218-22:15:01,408 nipype.workflow INFO:
[Job 832] Cached (_std_tpms1).
231218-22:15:03,270 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:03,406 nipype.workflow INFO:
[Job 833] Cached (_std_tpms2).
231218-22:15:03,407 nipype.workflow INFO:
[Job 834] Cached (_lta_ras2ras0).
231218-22:15:05,272 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:05,412 nipype.workflow INFO:
[Job 286] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.std_tpms).
231218-22:15:05,414 nipype.workflow INFO:
[Job 835] Cached (_lta_ras2ras1).
231218-22:15:07,408 nipype.workflow INFO:
[Job 256] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.lta_ras2ras).
231218-22:15:07,413 nipype.workflow INFO:
[Job 298] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_norm_wf.outputnode).
231218-22:15:09,276 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 24 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:09,409 nipype.workflow INFO:
[Job 265] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.compare_transforms).
231218-22:15:09,425 nipype.workflow INFO:
[Node] Setting-up "_ds_t1w2std_xfm0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_t1w2std_xfm/mapflow/_ds_t1w2std_xfm0".
231218-22:15:09,428 nipype.workflow INFO:
[Node] Executing "_ds_t1w2std_xfm0" <smriprep.interfaces.DerivativesDataSink>
231218-22:15:09,433 nipype.workflow INFO:
[Node] Finished "_ds_t1w2std_xfm0", elapsed time 0.004031s.
231218-22:15:09,436 nipype.workflow INFO:
[Job 302] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_t1w2std_xfm).
231218-22:15:09,587 nipype.workflow INFO:
[Node] Setting-up "_ds_std2t1w_xfm0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_std2t1w_xfm/mapflow/_ds_std2t1w_xfm0".
231218-22:15:09,590 nipype.workflow INFO:
[Node] Executing "_ds_std2t1w_xfm0" <smriprep.interfaces.DerivativesDataSink>
231218-22:15:09,595 nipype.workflow INFO:
[Node] Finished "_ds_std2t1w_xfm0", elapsed time 0.003588s.
231218-22:15:09,598 nipype.workflow INFO:
[Job 303] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std2t1w_xfm).
231218-22:15:09,734 nipype.workflow INFO:
[Job 304] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_select_std).
231218-22:15:11,278 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:11,411 nipype.workflow INFO:
[Job 275] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.select_transform).
231218-22:15:11,413 nipype.workflow INFO:
[Job 276] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.select_report).
231218-22:15:13,411 nipype.workflow INFO:
[Job 292] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.merge_ltas).
231218-22:15:13,414 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.ds_report_reg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/bold_reg_wf/ds_report_reg".
231218-22:15:13,418 nipype.workflow INFO:
[Node] Executing "ds_report_reg" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:13,424 nipype.workflow INFO:
[Node] Finished "ds_report_reg", elapsed time 0.005193s.
231218-22:15:13,426 nipype.workflow INFO:
[Job 293] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.ds_report_reg).
231218-22:15:13,552 nipype.workflow INFO:
[Job 305] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_select_std).
231218-22:15:15,282 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 20 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:15,415 nipype.workflow INFO:
[Job 300] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_reg_wf.bbreg_wf.concat_xfm).
231218-22:15:15,417 nipype.workflow INFO:
[Job 306] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.select_std).
231218-22:15:17,284 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 27 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:17,414 nipype.workflow INFO:
[Job 307] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.select_std).
231218-22:15:17,416 nipype.workflow INFO:
[Job 308] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.select_xfm).
231218-22:15:19,286 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 35 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:19,418 nipype.workflow INFO:
[Job 309] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.mask_t1w_tfm).
231218-22:15:19,420 nipype.workflow INFO:
[Job 310] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.merge_xforms).
231218-22:15:21,288 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 37 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:21,420 nipype.workflow INFO:
[Job 311] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.t1w_mask_tfm).
231218-22:15:21,423 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_ref_t1w_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_ref_t1w_xfm".
231218-22:15:21,426 nipype.workflow INFO:
[Node] Executing "ds_ref_t1w_xfm" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:21,432 nipype.workflow INFO:
[Node] Finished "ds_ref_t1w_xfm", elapsed time 0.00421s.
231218-22:15:21,434 nipype.workflow INFO:
[Job 313] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_ref_t1w_xfm).
231218-22:15:21,567 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_t1w_tpl_inv_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_t1w_tpl_inv_xfm".
231218-22:15:21,570 nipype.workflow INFO:
[Node] Executing "ds_t1w_tpl_inv_xfm" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:21,575 nipype.workflow INFO:
[Node] Finished "ds_t1w_tpl_inv_xfm", elapsed time 0.003905s.
231218-22:15:21,577 nipype.workflow INFO:
[Job 314] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_t1w_tpl_inv_xfm).
231218-22:15:21,709 nipype.workflow INFO:
[Job 321] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_wf.mrg_xfms).
231218-22:15:23,290 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 35 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:23,423 nipype.workflow INFO:
[Job 325] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.aseg_std_tfm).
231218-22:15:23,427 nipype.workflow INFO:
[Job 326] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.aparc_std_tfm).
231218-22:15:25,292 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 33 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:25,424 nipype.workflow INFO:
[Job 327] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.merge_xforms).
231218-22:15:25,426 nipype.workflow INFO:
[Job 328] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.mask_merge_tfms).
231218-22:15:27,424 nipype.workflow INFO:
[Job 329] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.aseg_std_tfm).
231218-22:15:27,427 nipype.workflow INFO:
[Job 330] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.aparc_std_tfm).
231218-22:15:29,296 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 31 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:29,427 nipype.workflow INFO:
[Job 331] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.anat2std_t1w).
231218-22:15:29,430 nipype.workflow INFO:
[Job 332] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.anat2std_mask).
231218-22:15:31,429 nipype.workflow INFO:
[Job 333] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.anat2std_dseg).
231218-22:15:31,432 nipype.workflow INFO:
[Job 335] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.boldmask_to_t1w).
231218-22:15:33,445 nipype.workflow INFO:
[Job 336] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_to_t1w_transform).
231218-22:15:33,448 nipype.workflow INFO:
[Job 337] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.union_mask).
231218-22:15:35,431 nipype.workflow INFO:
[Job 343] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_wf.resample_parc).
231218-22:15:35,447 nipype.workflow INFO:
[Job 347] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_to_std_transform).
231218-22:15:37,304 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 175 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:37,441 nipype.workflow INFO:
[Job 348] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.mask_std_tfm).
231218-22:15:37,444 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_t1w" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_std_t1w".
231218-22:15:37,448 nipype.workflow INFO:
[Node] Executing "ds_std_t1w" <smriprep.interfaces.DerivativesDataSink>
231218-22:15:38,460 nipype.workflow INFO:
[Node] Finished "ds_std_t1w", elapsed time 1.011387s.
231218-22:15:38,463 nipype.workflow INFO:
[Job 349] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_t1w).
231218-22:15:38,598 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_mask" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_std_mask".
231218-22:15:38,601 nipype.workflow INFO:
[Node] Executing "ds_std_mask" <smriprep.interfaces.DerivativesDataSink>
231218-22:15:38,618 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/anat/sub-08_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz dtype from float64 to uint8
231218-22:15:39,182 nipype.workflow INFO:
[Node] Finished "ds_std_mask", elapsed time 0.579196s.
231218-22:15:39,184 nipype.workflow INFO:
[Job 350] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_mask).
231218-22:15:39,316 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_dseg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_std_dseg".
231218-22:15:39,320 nipype.workflow INFO:
[Node] Executing "ds_std_dseg" <smriprep.interfaces.DerivativesDataSink>
231218-22:15:39,336 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/anat/sub-08_space-MNI152NLin2009cAsym_dseg.nii.gz dtype from float64 to int16
231218-22:15:40,899 nipype.workflow INFO:
[Node] Finished "ds_std_dseg", elapsed time 1.5780669999999999s.
231218-22:15:40,902 nipype.workflow INFO:
[Job 351] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_dseg).
231218-22:15:41,58 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_mask_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_mask_t1".
231218-22:15:41,62 nipype.workflow INFO:
[Node] Executing "ds_bold_mask_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:41,72 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-1_space-T1w_desc-brain_mask.nii.gz dtype from float64 to uint8
231218-22:15:41,93 nipype.workflow INFO:
[Node] Finished "ds_bold_mask_t1", elapsed time 0.029672s.
231218-22:15:41,96 nipype.workflow INFO:
[Job 353] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_mask_t1).
231218-22:15:41,250 nipype.workflow INFO:
[Job 355] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.dilated_mask).
231218-22:15:41,324 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 315 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:41,478 nipype.workflow INFO:
[Job 364] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.subtract_mask).
231218-22:15:41,480 nipype.workflow INFO:
[Job 836] Cached (_lta_ras2ras0).
231218-22:15:43,487 nipype.workflow INFO:
[Job 379] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.crowncompcor).
231218-22:15:43,490 nipype.workflow INFO:
[Job 381] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_wf.parcels).
231218-22:15:45,328 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 314 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:45,483 nipype.workflow INFO:
[Job 403] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.crowncc_metadata_fmt).
231218-22:15:45,485 nipype.workflow INFO:
[Job 837] Cached (_lta_ras2ras1).
231218-22:15:47,330 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 313 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:47,486 nipype.workflow INFO:
[Job 257] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.lta_ras2ras).
231218-22:15:47,488 nipype.workflow INFO:
[Job 838] Cached (_fs2gii0).
231218-22:15:49,332 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 312 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:49,485 nipype.workflow INFO:
[Job 266] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.compare_transforms).
231218-22:15:49,487 nipype.workflow INFO:
[Job 839] Cached (_fs2gii1).
231218-22:15:51,488 nipype.workflow INFO:
[Job 277] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.select_transform).
231218-22:15:51,491 nipype.workflow INFO:
[Job 278] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.select_report).
231218-22:15:53,495 nipype.workflow INFO:
[Job 294] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.merge_ltas).
231218-22:15:53,499 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.ds_report_reg" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/bold_reg_wf/ds_report_reg".
231218-22:15:53,502 nipype.workflow INFO:
[Node] Executing "ds_report_reg" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:53,511 nipype.workflow INFO:
[Node] Finished "ds_report_reg", elapsed time 0.006853s.
231218-22:15:53,513 nipype.workflow INFO:
[Job 295] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.ds_report_reg).
231218-22:15:53,669 nipype.workflow INFO:
[Job 840] Cached (_fs2gii2).
231218-22:15:55,338 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 310 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:55,493 nipype.workflow INFO:
[Job 301] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_reg_wf.bbreg_wf.concat_xfm).
231218-22:15:55,496 nipype.workflow INFO:
[Job 841] Cached (_fs2gii3).
231218-22:15:57,340 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 317 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:57,497 nipype.workflow INFO:
[Job 315] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.mask_t1w_tfm).
231218-22:15:57,500 nipype.workflow INFO:
[Job 316] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.merge_xforms).
231218-22:15:59,342 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 319 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:15:59,499 nipype.workflow INFO:
[Job 317] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.t1w_mask_tfm).
231218-22:15:59,502 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_ref_t1w_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_ref_t1w_xfm".
231218-22:15:59,506 nipype.workflow INFO:
[Node] Executing "ds_ref_t1w_xfm" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:59,513 nipype.workflow INFO:
[Node] Finished "ds_ref_t1w_xfm", elapsed time 0.004988s.
231218-22:15:59,515 nipype.workflow INFO:
[Job 319] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_ref_t1w_xfm).
231218-22:15:59,672 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_t1w_tpl_inv_xfm" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_t1w_tpl_inv_xfm".
231218-22:15:59,676 nipype.workflow INFO:
[Node] Executing "ds_t1w_tpl_inv_xfm" <fmriprep.interfaces.DerivativesDataSink>
231218-22:15:59,683 nipype.workflow INFO:
[Node] Finished "ds_t1w_tpl_inv_xfm", elapsed time 0.005097s.
231218-22:15:59,685 nipype.workflow INFO:
[Job 320] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_t1w_tpl_inv_xfm).
231218-22:15:59,841 nipype.workflow INFO:
[Job 322] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_wf.mrg_xfms).
231218-22:16:01,344 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 317 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:16:01,502 nipype.workflow INFO:
[Job 323] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.merge_xforms).
231218-22:16:01,505 nipype.workflow INFO:
[Job 324] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.mask_merge_tfms).
231218-22:16:03,504 nipype.workflow INFO:
[Job 339] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.boldmask_to_t1w).
231218-22:16:03,526 nipype.workflow INFO:
[Job 340] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_to_t1w_transform).
231218-22:16:05,506 nipype.workflow INFO:
[Job 341] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.union_mask).
231218-22:16:05,510 nipype.workflow INFO:
[Job 344] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_wf.resample_parc).
231218-22:16:07,350 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 461 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:16:07,525 nipype.workflow INFO:
[Job 345] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_to_std_transform).
231218-22:16:07,529 nipype.workflow INFO:
[Job 346] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.mask_std_tfm).
231218-22:16:09,352 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 460 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:16:09,502 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_mask_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_mask_t1".
231218-22:16:09,506 nipype.workflow INFO:
[Node] Executing "ds_bold_mask_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:16:09,516 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-2_space-T1w_desc-brain_mask.nii.gz dtype from float64 to uint8
231218-22:16:09,538 nipype.workflow INFO:
[Node] Finished "ds_bold_mask_t1", elapsed time 0.030467s.
231218-22:16:09,541 nipype.workflow INFO:
[Job 357] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_mask_t1).
231218-22:16:09,697 nipype.workflow INFO:
[Job 359] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.dilated_mask).
231218-22:16:09,769 nipype.workflow INFO:
[Job 842] Cached (_fs2gii4).
231218-22:16:11,355 nipype.workflow INFO:
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[Job 368] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.subtract_mask).
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[Job 843] Cached (_fs2gii5).
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[Job 390] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.crowncompcor).
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[Job 392] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_wf.parcels).
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[Job 412] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.crowncc_metadata_fmt).
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[Job 844] Cached (_fs2gii6).
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[Job 845] Cached (_fs2gii7).
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[Job 846] Cached (_name_morphs0).
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[Job 258] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fs2gii).
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[Job 847] Cached (_name_morphs1).
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[Job 848] Cached (_name_morphs2).
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[Job 850] Cached (_name_morphs4).
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[Job 249] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.name_morphs).
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[Job 852] Cached (_acc_msk_tfm0).
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[Job 853] Cached (_acc_msk_tfm1).
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[Job 312] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acc_msk_tfm).
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[Job 855] Cached (_anat2std_tpms0).
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[Job 856] Cached (_anat2std_tpms1).
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[Job 857] Cached (_anat2std_tpms2).
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[Job 334] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.anat2std_tpms).
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[MultiProc] Running 0 tasks, and 604 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_tpms" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_std_tpms".
231218-22:16:35,517 nipype.workflow INFO:
[Node] Executing "ds_std_tpms" <smriprep.interfaces.DerivativesDataSink>
231218-22:16:38,891 nipype.workflow INFO:
[Node] Finished "ds_std_tpms", elapsed time 3.37261s.
231218-22:16:38,894 nipype.workflow INFO:
[Job 352] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_std_tpms).
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[Job 859] Cached (_threshold1).
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[Job 879] Cached (_threshold21).
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[Job 881] Cached (_threshold23).
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[Job 883] Cached (_threshold25).
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[Job 885] Cached (_threshold27).
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[MultiProc] Running 0 tasks, and 575 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 887] Cached (_threshold29).
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[Job 888] Cached (_threshold30).
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[MultiProc] Running 0 tasks, and 573 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 889] Cached (_threshold31).
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[MultiProc] Running 0 tasks, and 571 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 891] Cached (_threshold33).
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[MultiProc] Running 0 tasks, and 569 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 893] Cached (_threshold35).
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[Job 894] Cached (_threshold36).
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[MultiProc] Running 0 tasks, and 567 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 895] Cached (_threshold37).
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[Job 896] Cached (_threshold38).
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[MultiProc] Running 0 tasks, and 565 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 897] Cached (_threshold39).
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[Job 898] Cached (_threshold40).
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[MultiProc] Running 0 tasks, and 563 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 899] Cached (_threshold41).
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[Job 900] Cached (_threshold42).
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[MultiProc] Running 0 tasks, and 561 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 901] Cached (_threshold43).
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[Job 902] Cached (_threshold44).
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[MultiProc] Running 0 tasks, and 559 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 903] Cached (_threshold45).
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[Job 904] Cached (_threshold46).
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[MultiProc] Running 0 tasks, and 557 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 905] Cached (_threshold47).
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[Job 906] Cached (_threshold48).
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[MultiProc] Running 0 tasks, and 555 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 907] Cached (_threshold49).
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[Job 908] Cached (_threshold50).
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[MultiProc] Running 0 tasks, and 553 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 909] Cached (_threshold51).
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[Job 910] Cached (_threshold52).
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[MultiProc] Running 0 tasks, and 551 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 911] Cached (_threshold53).
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[Job 912] Cached (_threshold54).
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[MultiProc] Running 0 tasks, and 549 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 913] Cached (_threshold55).
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[Job 914] Cached (_threshold56).
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[Job 915] Cached (_threshold57).
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[Job 917] Cached (_threshold59).
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[MultiProc] Running 0 tasks, and 543 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 919] Cached (_threshold61).
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[Job 921] Cached (_threshold63).
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[Job 922] Cached (_threshold64).
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[Job 923] Cached (_threshold65).
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[Job 924] Cached (_threshold66).
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[Job 925] Cached (_threshold67).
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[Job 927] Cached (_threshold69).
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[Job 949] Cached (_threshold91).
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[Job 951] Cached (_threshold93).
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[Job 953] Cached (_threshold95).
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231218-22:18:13,130 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 507 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:13,262 nipype.workflow INFO:
[Job 955] Cached (_threshold97).
231218-22:18:13,263 nipype.workflow INFO:
[Job 956] Cached (_threshold98).
231218-22:18:15,132 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 505 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:15,263 nipype.workflow INFO:
[Job 957] Cached (_threshold99).
231218-22:18:15,264 nipype.workflow INFO:
[Job 958] Cached (_threshold100).
231218-22:18:17,134 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 503 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:17,261 nipype.workflow INFO:
[Job 959] Cached (_threshold101).
231218-22:18:17,262 nipype.workflow INFO:
[Job 960] Cached (_threshold102).
231218-22:18:19,137 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 501 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:19,291 nipype.workflow INFO:
[Job 961] Cached (_threshold103).
231218-22:18:19,293 nipype.workflow INFO:
[Job 962] Cached (_threshold104).
231218-22:18:21,139 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 499 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:21,294 nipype.workflow INFO:
[Job 963] Cached (_threshold105).
231218-22:18:21,296 nipype.workflow INFO:
[Job 964] Cached (_threshold106).
231218-22:18:23,141 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 497 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:23,297 nipype.workflow INFO:
[Job 965] Cached (_threshold107).
231218-22:18:23,298 nipype.workflow INFO:
[Job 966] Cached (_threshold108).
231218-22:18:25,143 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 495 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:25,298 nipype.workflow INFO:
[Job 967] Cached (_threshold109).
231218-22:18:25,300 nipype.workflow INFO:
[Job 968] Cached (_threshold110).
231218-22:18:27,145 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 493 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:27,306 nipype.workflow INFO:
[Job 969] Cached (_threshold111).
231218-22:18:27,308 nipype.workflow INFO:
[Job 970] Cached (_threshold112).
231218-22:18:29,147 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 491 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:29,301 nipype.workflow INFO:
[Job 971] Cached (_threshold113).
231218-22:18:29,302 nipype.workflow INFO:
[Job 972] Cached (_threshold114).
231218-22:18:31,149 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 489 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:31,303 nipype.workflow INFO:
[Job 973] Cached (_threshold115).
231218-22:18:31,304 nipype.workflow INFO:
[Job 974] Cached (_threshold116).
231218-22:18:33,151 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 487 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:33,304 nipype.workflow INFO:
[Job 975] Cached (_threshold117).
231218-22:18:33,306 nipype.workflow INFO:
[Job 976] Cached (_threshold118).
231218-22:18:35,153 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 485 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:35,308 nipype.workflow INFO:
[Job 977] Cached (_threshold119).
231218-22:18:35,309 nipype.workflow INFO:
[Job 978] Cached (_threshold120).
231218-22:18:37,155 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 483 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:37,310 nipype.workflow INFO:
[Job 979] Cached (_threshold121).
231218-22:18:37,312 nipype.workflow INFO:
[Job 980] Cached (_threshold122).
231218-22:18:39,157 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 481 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:39,313 nipype.workflow INFO:
[Job 981] Cached (_threshold123).
231218-22:18:39,314 nipype.workflow INFO:
[Job 982] Cached (_threshold124).
231218-22:18:41,159 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 479 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:41,314 nipype.workflow INFO:
[Job 983] Cached (_threshold125).
231218-22:18:41,315 nipype.workflow INFO:
[Job 984] Cached (_threshold126).
231218-22:18:43,161 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 477 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:43,316 nipype.workflow INFO:
[Job 985] Cached (_threshold127).
231218-22:18:43,317 nipype.workflow INFO:
[Job 986] Cached (_threshold128).
231218-22:18:45,162 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 475 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:45,319 nipype.workflow INFO:
[Job 987] Cached (_threshold129).
231218-22:18:45,320 nipype.workflow INFO:
[Job 988] Cached (_threshold130).
231218-22:18:47,164 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 473 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:47,322 nipype.workflow INFO:
[Job 989] Cached (_threshold131).
231218-22:18:47,323 nipype.workflow INFO:
[Job 990] Cached (_threshold132).
231218-22:18:49,166 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 471 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:49,321 nipype.workflow INFO:
[Job 991] Cached (_threshold133).
231218-22:18:49,323 nipype.workflow INFO:
[Job 992] Cached (_threshold134).
231218-22:18:51,168 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 469 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:51,325 nipype.workflow INFO:
[Job 993] Cached (_threshold135).
231218-22:18:51,326 nipype.workflow INFO:
[Job 994] Cached (_threshold136).
231218-22:18:53,170 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 467 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:53,326 nipype.workflow INFO:
[Job 995] Cached (_threshold137).
231218-22:18:53,327 nipype.workflow INFO:
[Job 996] Cached (_threshold138).
231218-22:18:55,173 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 465 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:55,329 nipype.workflow INFO:
[Job 997] Cached (_threshold139).
231218-22:18:55,330 nipype.workflow INFO:
[Job 998] Cached (_threshold140).
231218-22:18:57,174 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 463 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:57,333 nipype.workflow INFO:
[Job 999] Cached (_threshold141).
231218-22:18:57,334 nipype.workflow INFO:
[Job 1000] Cached (_threshold142).
231218-22:18:59,176 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 461 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:18:59,332 nipype.workflow INFO:
[Job 1001] Cached (_threshold143).
231218-22:18:59,333 nipype.workflow INFO:
[Job 1002] Cached (_threshold144).
231218-22:19:01,178 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 459 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:01,340 nipype.workflow INFO:
[Job 1003] Cached (_threshold145).
231218-22:19:01,341 nipype.workflow INFO:
[Job 1004] Cached (_threshold0).
231218-22:19:03,180 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 458 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:03,354 nipype.workflow INFO:
[Job 354] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.threshold).
231218-22:19:03,356 nipype.workflow INFO:
[Job 1005] Cached (_threshold1).
231218-22:19:05,182 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 457 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:05,365 nipype.workflow INFO:
[Job 363] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.merge).
231218-22:19:05,367 nipype.workflow INFO:
[Job 1006] Cached (_threshold2).
231218-22:19:07,184 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 461 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:07,347 nipype.workflow INFO:
[Job 373] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.val_bold).
231218-22:19:07,350 nipype.workflow INFO:
[Job 374] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.get_dummy).
231218-22:19:09,347 nipype.workflow INFO:
[Job 375] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.itk2lta).
231218-22:19:09,350 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_t1".
231218-22:19:09,354 nipype.workflow INFO:
[Node] Executing "ds_bold_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:19:10,907 nipype.workflow INFO:
[Node] Finished "ds_bold_t1", elapsed time 1.552159s.
231218-22:19:10,910 nipype.workflow INFO:
[Job 376] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_t1).
231218-22:19:11,46 nipype.workflow INFO:
[Job 377] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.rename_src).
231218-22:19:11,184 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 459 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:11,318 nipype.workflow INFO:
[Job 378] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.rename_src).
231218-22:19:11,320 nipype.workflow INFO:
[Job 399] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans).
231218-22:19:13,318 nipype.workflow INFO:
[Job 400] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.gen_avg).
231218-22:19:13,334 nipype.workflow INFO:
[Job 1007] Cached (_threshold3).
231218-22:19:15,320 nipype.workflow INFO:
[Job 421] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:19:15,322 nipype.workflow INFO:
[Job 1008] Cached (_threshold4).
231218-22:19:17,324 nipype.workflow INFO:
[Job 439] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:19:17,326 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_t1_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_bold_t1_ref".
231218-22:19:17,329 nipype.workflow INFO:
[Node] Executing "ds_bold_t1_ref" <fmriprep.interfaces.DerivativesDataSink>
231218-22:19:17,400 nipype.workflow INFO:
[Node] Finished "ds_bold_t1_ref", elapsed time 0.069829s.
231218-22:19:17,403 nipype.workflow INFO:
[Job 440] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_t1_ref).
231218-22:19:17,540 nipype.workflow INFO:
[Job 1009] Cached (_threshold5).
231218-22:19:19,192 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 457 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:19,353 nipype.workflow INFO:
[Job 457] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:19:19,355 nipype.workflow INFO:
[Job 1010] Cached (_threshold6).
231218-22:19:21,194 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 456 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:21,353 nipype.workflow INFO:
[Job 475] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:19:21,355 nipype.workflow INFO:
[Job 1011] Cached (_threshold7).
231218-22:19:23,196 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 455 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:23,354 nipype.workflow INFO:
[Job 499] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:19:23,356 nipype.workflow INFO:
[Job 1012] Cached (_threshold8).
231218-22:19:25,198 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 454 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:25,356 nipype.workflow INFO:
[Job 507] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:19:25,358 nipype.workflow INFO:
[Job 1013] Cached (_threshold9).
231218-22:19:27,200 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 453 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:27,365 nipype.workflow INFO:
[Job 511] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:19:27,367 nipype.workflow INFO:
[Job 1014] Cached (_threshold10).
231218-22:19:29,202 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 452 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:29,361 nipype.workflow INFO:
[Job 515] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:19:29,363 nipype.workflow INFO:
[Job 1015] Cached (_threshold11).
231218-22:19:31,204 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 451 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:31,363 nipype.workflow INFO:
[Job 519] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:19:31,365 nipype.workflow INFO:
[Job 1016] Cached (_threshold12).
231218-22:19:33,206 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 450 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:33,366 nipype.workflow INFO:
[Job 523] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:19:33,368 nipype.workflow INFO:
[Job 1017] Cached (_threshold13).
231218-22:19:35,207 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 448 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:35,366 nipype.workflow INFO:
[Job 1018] Cached (_threshold14).
231218-22:19:35,367 nipype.workflow INFO:
[Job 1019] Cached (_threshold15).
231218-22:19:37,209 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 446 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:37,369 nipype.workflow INFO:
[Job 1020] Cached (_threshold16).
231218-22:19:37,370 nipype.workflow INFO:
[Job 1021] Cached (_threshold17).
231218-22:19:39,211 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 444 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:39,372 nipype.workflow INFO:
[Job 1022] Cached (_threshold18).
231218-22:19:39,374 nipype.workflow INFO:
[Job 1023] Cached (_threshold19).
231218-22:19:41,213 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 442 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:41,357 nipype.workflow INFO:
[Job 1024] Cached (_threshold20).
231218-22:19:41,358 nipype.workflow INFO:
[Job 1025] Cached (_threshold21).
231218-22:19:43,212 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 440 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:43,345 nipype.workflow INFO:
[Job 1026] Cached (_threshold22).
231218-22:19:43,346 nipype.workflow INFO:
[Job 1027] Cached (_threshold23).
231218-22:19:45,214 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 438 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:45,348 nipype.workflow INFO:
[Job 1028] Cached (_threshold24).
231218-22:19:45,349 nipype.workflow INFO:
[Job 1029] Cached (_threshold25).
231218-22:19:47,216 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 436 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:47,349 nipype.workflow INFO:
[Job 1030] Cached (_threshold26).
231218-22:19:47,350 nipype.workflow INFO:
[Job 1031] Cached (_threshold27).
231218-22:19:49,218 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 434 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:49,352 nipype.workflow INFO:
[Job 1032] Cached (_threshold28).
231218-22:19:49,353 nipype.workflow INFO:
[Job 1033] Cached (_threshold29).
231218-22:19:51,220 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 432 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:51,355 nipype.workflow INFO:
[Job 1034] Cached (_threshold30).
231218-22:19:51,356 nipype.workflow INFO:
[Job 1035] Cached (_threshold31).
231218-22:19:53,222 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 430 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:53,359 nipype.workflow INFO:
[Job 1036] Cached (_threshold32).
231218-22:19:53,360 nipype.workflow INFO:
[Job 1037] Cached (_threshold33).
231218-22:19:55,225 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 428 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:55,358 nipype.workflow INFO:
[Job 1038] Cached (_threshold34).
231218-22:19:55,359 nipype.workflow INFO:
[Job 1039] Cached (_threshold35).
231218-22:19:57,227 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 426 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:57,360 nipype.workflow INFO:
[Job 1040] Cached (_threshold36).
231218-22:19:57,361 nipype.workflow INFO:
[Job 1041] Cached (_threshold37).
231218-22:19:59,228 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 424 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:19:59,369 nipype.workflow INFO:
[Job 1042] Cached (_threshold38).
231218-22:19:59,370 nipype.workflow INFO:
[Job 1043] Cached (_threshold39).
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[MultiProc] Running 0 tasks, and 422 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1044] Cached (_threshold40).
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[Job 1045] Cached (_threshold41).
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[MultiProc] Running 0 tasks, and 420 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1046] Cached (_threshold42).
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[Job 1047] Cached (_threshold43).
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[MultiProc] Running 0 tasks, and 418 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1048] Cached (_threshold44).
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[Job 1049] Cached (_threshold45).
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[MultiProc] Running 0 tasks, and 416 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1050] Cached (_threshold46).
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[Job 1051] Cached (_threshold47).
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[MultiProc] Running 0 tasks, and 414 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1052] Cached (_threshold48).
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[Job 1053] Cached (_threshold49).
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[MultiProc] Running 0 tasks, and 412 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1054] Cached (_threshold50).
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[Job 1055] Cached (_threshold51).
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[MultiProc] Running 0 tasks, and 410 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1056] Cached (_threshold52).
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[Job 1057] Cached (_threshold53).
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[MultiProc] Running 0 tasks, and 408 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1058] Cached (_threshold54).
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[Job 1059] Cached (_threshold55).
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[MultiProc] Running 0 tasks, and 406 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1060] Cached (_threshold56).
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[Job 1061] Cached (_threshold57).
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[MultiProc] Running 0 tasks, and 404 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1062] Cached (_threshold58).
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[Job 1063] Cached (_threshold59).
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[MultiProc] Running 0 tasks, and 402 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1064] Cached (_threshold60).
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[Job 1065] Cached (_threshold61).
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[MultiProc] Running 0 tasks, and 400 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1066] Cached (_threshold62).
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[Job 1067] Cached (_threshold63).
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[MultiProc] Running 0 tasks, and 398 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1068] Cached (_threshold64).
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[Job 1069] Cached (_threshold65).
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[MultiProc] Running 0 tasks, and 396 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:27,389 nipype.workflow INFO:
[Job 1070] Cached (_threshold66).
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[Job 1071] Cached (_threshold67).
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[MultiProc] Running 0 tasks, and 394 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:29,390 nipype.workflow INFO:
[Job 1072] Cached (_threshold68).
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[Job 1073] Cached (_threshold69).
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[MultiProc] Running 0 tasks, and 392 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1074] Cached (_threshold70).
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[Job 1075] Cached (_threshold71).
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[MultiProc] Running 0 tasks, and 390 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1076] Cached (_threshold72).
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[Job 1077] Cached (_threshold73).
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[MultiProc] Running 0 tasks, and 388 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:35,397 nipype.workflow INFO:
[Job 1078] Cached (_threshold74).
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[Job 1079] Cached (_threshold75).
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[MultiProc] Running 0 tasks, and 386 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:37,401 nipype.workflow INFO:
[Job 1080] Cached (_threshold76).
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[Job 1081] Cached (_threshold77).
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[MultiProc] Running 0 tasks, and 384 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:39,402 nipype.workflow INFO:
[Job 1082] Cached (_threshold78).
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[Job 1083] Cached (_threshold79).
231218-22:20:41,269 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 382 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:41,402 nipype.workflow INFO:
[Job 1084] Cached (_threshold80).
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[Job 1085] Cached (_threshold81).
231218-22:20:43,271 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 380 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:43,406 nipype.workflow INFO:
[Job 1086] Cached (_threshold82).
231218-22:20:43,407 nipype.workflow INFO:
[Job 1087] Cached (_threshold83).
231218-22:20:45,273 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 378 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:45,407 nipype.workflow INFO:
[Job 1088] Cached (_threshold84).
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[Job 1089] Cached (_threshold85).
231218-22:20:47,275 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 376 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:47,409 nipype.workflow INFO:
[Job 1090] Cached (_threshold86).
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[Job 1091] Cached (_threshold87).
231218-22:20:49,277 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 374 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:49,410 nipype.workflow INFO:
[Job 1092] Cached (_threshold88).
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[Job 1093] Cached (_threshold89).
231218-22:20:51,279 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 372 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:51,412 nipype.workflow INFO:
[Job 1094] Cached (_threshold90).
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[Job 1095] Cached (_threshold91).
231218-22:20:53,281 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 370 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:53,415 nipype.workflow INFO:
[Job 1096] Cached (_threshold92).
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[Job 1097] Cached (_threshold93).
231218-22:20:55,283 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 368 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:55,415 nipype.workflow INFO:
[Job 1098] Cached (_threshold94).
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[Job 1099] Cached (_threshold95).
231218-22:20:57,285 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 366 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:57,420 nipype.workflow INFO:
[Job 1100] Cached (_threshold96).
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[Job 1101] Cached (_threshold97).
231218-22:20:59,287 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 364 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:20:59,421 nipype.workflow INFO:
[Job 1102] Cached (_threshold98).
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[Job 1103] Cached (_threshold99).
231218-22:21:01,288 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 362 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1104] Cached (_threshold100).
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[Job 1105] Cached (_threshold101).
231218-22:21:03,291 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 360 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:03,425 nipype.workflow INFO:
[Job 1106] Cached (_threshold102).
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[Job 1107] Cached (_threshold103).
231218-22:21:05,292 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 358 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:05,431 nipype.workflow INFO:
[Job 1108] Cached (_threshold104).
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[Job 1109] Cached (_threshold105).
231218-22:21:07,294 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 356 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:07,428 nipype.workflow INFO:
[Job 1110] Cached (_threshold106).
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[Job 1111] Cached (_threshold107).
231218-22:21:09,296 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 354 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:09,433 nipype.workflow INFO:
[Job 1112] Cached (_threshold108).
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[Job 1113] Cached (_threshold109).
231218-22:21:11,298 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 352 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1114] Cached (_threshold110).
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[Job 1115] Cached (_threshold111).
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[MultiProc] Running 0 tasks, and 350 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:13,434 nipype.workflow INFO:
[Job 1116] Cached (_threshold112).
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[Job 1117] Cached (_threshold113).
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[MultiProc] Running 0 tasks, and 348 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:15,437 nipype.workflow INFO:
[Job 1118] Cached (_threshold114).
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[Job 1119] Cached (_threshold115).
231218-22:21:17,304 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 346 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1120] Cached (_threshold116).
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[Job 1121] Cached (_threshold117).
231218-22:21:19,306 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 344 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:19,443 nipype.workflow INFO:
[Job 1122] Cached (_threshold118).
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[Job 1123] Cached (_threshold119).
231218-22:21:21,308 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 342 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:21,445 nipype.workflow INFO:
[Job 1124] Cached (_threshold120).
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[Job 1125] Cached (_threshold121).
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[MultiProc] Running 0 tasks, and 340 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1126] Cached (_threshold122).
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[Job 1127] Cached (_threshold123).
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[MultiProc] Running 0 tasks, and 338 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1128] Cached (_threshold124).
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[Job 1129] Cached (_threshold125).
231218-22:21:27,314 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 336 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1130] Cached (_threshold126).
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[Job 1131] Cached (_threshold127).
231218-22:21:29,315 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 334 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:29,453 nipype.workflow INFO:
[Job 1132] Cached (_threshold128).
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[Job 1133] Cached (_threshold129).
231218-22:21:31,316 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 332 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:31,449 nipype.workflow INFO:
[Job 1134] Cached (_threshold130).
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[Job 1135] Cached (_threshold131).
231218-22:21:33,318 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 330 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:33,454 nipype.workflow INFO:
[Job 1136] Cached (_threshold132).
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[Job 1137] Cached (_threshold133).
231218-22:21:35,320 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 328 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:35,459 nipype.workflow INFO:
[Job 1138] Cached (_threshold134).
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[Job 1139] Cached (_threshold135).
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[MultiProc] Running 0 tasks, and 326 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:37,457 nipype.workflow INFO:
[Job 1140] Cached (_threshold136).
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[Job 1141] Cached (_threshold137).
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[MultiProc] Running 0 tasks, and 324 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1142] Cached (_threshold138).
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[Job 1143] Cached (_threshold139).
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[MultiProc] Running 0 tasks, and 322 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1144] Cached (_threshold140).
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[Job 1145] Cached (_threshold141).
231218-22:21:43,328 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 320 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1146] Cached (_threshold142).
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[Job 1147] Cached (_threshold143).
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[MultiProc] Running 0 tasks, and 318 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1148] Cached (_threshold144).
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[Job 1149] Cached (_threshold145).
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[MultiProc] Running 0 tasks, and 317 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:47,486 nipype.workflow INFO:
[Job 362] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.threshold).
231218-22:21:47,488 nipype.workflow INFO:
[Job 1150] Cached (_acc_msk_tfm0).
231218-22:21:49,334 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 316 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:49,487 nipype.workflow INFO:
[Job 372] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.merge).
231218-22:21:49,489 nipype.workflow INFO:
[Job 1151] Cached (_acc_msk_tfm1).
231218-22:21:51,471 nipype.workflow INFO:
[Job 397] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.val_bold).
231218-22:21:51,473 nipype.workflow INFO:
[Job 398] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.get_dummy).
231218-22:21:53,472 nipype.workflow INFO:
[Job 419] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans).
231218-22:21:53,475 nipype.workflow INFO:
[Job 420] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.gen_avg).
231218-22:21:55,340 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 315 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:55,475 nipype.workflow INFO:
[Job 438] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:21:55,476 nipype.workflow INFO:
[Job 1152] Cached (_acc_msk_tfm2).
231218-22:21:57,342 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 316 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:21:57,477 nipype.workflow INFO:
[Job 318] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acc_msk_tfm).
231218-22:21:57,480 nipype.workflow INFO:
[Job 455] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:21:59,490 nipype.workflow INFO:
[Job 456] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.outputnode).
231218-22:21:59,493 nipype.workflow INFO:
[Job 472] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:22:01,347 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 319 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:01,491 nipype.workflow INFO:
[Job 473] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.select_fs_std).
231218-22:22:01,494 nipype.workflow INFO:
[Job 474] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.select_std).
231218-22:22:03,349 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 322 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:03,484 nipype.workflow INFO:
[Job 493] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:22:03,487 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aseg_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_aseg_std".
231218-22:22:03,491 nipype.workflow INFO:
[Node] Executing "ds_bold_aseg_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:22:03,503 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-1_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz dtype from float64 to int16
231218-22:22:03,573 nipype.workflow INFO:
[Node] Finished "ds_bold_aseg_std", elapsed time 0.080963s.
231218-22:22:03,575 nipype.workflow INFO:
[Job 494] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aseg_std).
231218-22:22:03,712 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aparc_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_aparc_std".
231218-22:22:03,717 nipype.workflow INFO:
[Node] Executing "ds_bold_aparc_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:22:03,728 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-1_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz dtype from float64 to int16
231218-22:22:03,778 nipype.workflow INFO:
[Node] Finished "ds_bold_aparc_std", elapsed time 0.059432s.
231218-22:22:03,780 nipype.workflow INFO:
[Job 495] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_aparc_std).
231218-22:22:03,918 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_std".
231218-22:22:03,921 nipype.workflow INFO:
[Node] Executing "ds_bold_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:22:07,684 nipype.workflow INFO:
[Node] Finished "ds_bold_std", elapsed time 3.76198s.
231218-22:22:07,686 nipype.workflow INFO:
[Job 496] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_std).
231218-22:22:07,825 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_std_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_std_ref".
231218-22:22:07,828 nipype.workflow INFO:
[Node] Executing "ds_bold_std_ref" <fmriprep.interfaces.DerivativesDataSink>
231218-22:22:07,967 nipype.workflow INFO:
[Node] Finished "ds_bold_std_ref", elapsed time 0.137587s.
231218-22:22:07,969 nipype.workflow INFO:
[Job 497] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_std_ref).
231218-22:22:08,108 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_mask_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_mask_std".
231218-22:22:08,111 nipype.workflow INFO:
[Node] Executing "ds_bold_mask_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:22:08,122 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-1_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz dtype from float64 to uint8
231218-22:22:08,154 nipype.workflow INFO:
[Node] Finished "ds_bold_mask_std", elapsed time 0.041809s.
231218-22:22:08,156 nipype.workflow INFO:
[Job 498] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_mask_std).
231218-22:22:08,291 nipype.workflow INFO:
[Job 1153] Cached (_threshold0).
231218-22:22:08,297 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 316 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:08,432 nipype.workflow INFO:
[Job 506] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:22:08,433 nipype.workflow INFO:
[Job 1154] Cached (_threshold1).
231218-22:22:10,300 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 315 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:10,439 nipype.workflow INFO:
[Job 510] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:22:10,441 nipype.workflow INFO:
[Job 1155] Cached (_threshold2).
231218-22:22:12,302 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 314 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:12,438 nipype.workflow INFO:
[Job 514] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:22:12,439 nipype.workflow INFO:
[Job 1156] Cached (_threshold3).
231218-22:22:14,304 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 313 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:14,450 nipype.workflow INFO:
[Job 518] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:22:14,451 nipype.workflow INFO:
[Job 1157] Cached (_threshold4).
231218-22:22:16,306 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 312 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:16,442 nipype.workflow INFO:
[Job 522] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:22:16,444 nipype.workflow INFO:
[Job 1158] Cached (_threshold5).
231218-22:22:18,308 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 311 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:18,443 nipype.workflow INFO:
[Job 526] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:22:18,444 nipype.workflow INFO:
[Job 1159] Cached (_threshold6).
231218-22:22:20,310 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 309 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:20,445 nipype.workflow INFO:
[Job 1160] Cached (_threshold7).
231218-22:22:20,446 nipype.workflow INFO:
[Job 1161] Cached (_threshold8).
231218-22:22:22,312 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 307 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:22,446 nipype.workflow INFO:
[Job 1162] Cached (_threshold9).
231218-22:22:22,447 nipype.workflow INFO:
[Job 1163] Cached (_threshold10).
231218-22:22:24,314 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 305 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:24,441 nipype.workflow INFO:
[Job 1164] Cached (_threshold11).
231218-22:22:24,442 nipype.workflow INFO:
[Job 1165] Cached (_threshold12).
231218-22:22:26,317 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 303 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:26,454 nipype.workflow INFO:
[Job 1166] Cached (_threshold13).
231218-22:22:26,455 nipype.workflow INFO:
[Job 1167] Cached (_threshold14).
231218-22:22:28,318 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 301 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:28,455 nipype.workflow INFO:
[Job 1168] Cached (_threshold15).
231218-22:22:28,456 nipype.workflow INFO:
[Job 1169] Cached (_threshold16).
231218-22:22:30,320 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 299 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:30,454 nipype.workflow INFO:
[Job 1170] Cached (_threshold17).
231218-22:22:30,455 nipype.workflow INFO:
[Job 1171] Cached (_threshold18).
231218-22:22:32,322 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 297 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:32,456 nipype.workflow INFO:
[Job 1172] Cached (_threshold19).
231218-22:22:32,458 nipype.workflow INFO:
[Job 1173] Cached (_threshold20).
231218-22:22:34,324 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 295 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:34,461 nipype.workflow INFO:
[Job 1174] Cached (_threshold21).
231218-22:22:34,462 nipype.workflow INFO:
[Job 1175] Cached (_threshold22).
231218-22:22:36,326 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 293 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:36,462 nipype.workflow INFO:
[Job 1176] Cached (_threshold23).
231218-22:22:36,463 nipype.workflow INFO:
[Job 1177] Cached (_threshold24).
231218-22:22:38,328 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 291 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:38,464 nipype.workflow INFO:
[Job 1178] Cached (_threshold25).
231218-22:22:38,465 nipype.workflow INFO:
[Job 1179] Cached (_threshold26).
231218-22:22:40,330 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 289 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:40,467 nipype.workflow INFO:
[Job 1180] Cached (_threshold27).
231218-22:22:40,468 nipype.workflow INFO:
[Job 1181] Cached (_threshold28).
231218-22:22:42,332 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 287 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:42,468 nipype.workflow INFO:
[Job 1182] Cached (_threshold29).
231218-22:22:42,469 nipype.workflow INFO:
[Job 1183] Cached (_threshold30).
231218-22:22:44,334 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 285 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:44,469 nipype.workflow INFO:
[Job 1184] Cached (_threshold31).
231218-22:22:44,470 nipype.workflow INFO:
[Job 1185] Cached (_threshold32).
231218-22:22:46,336 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 283 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:46,471 nipype.workflow INFO:
[Job 1186] Cached (_threshold33).
231218-22:22:46,472 nipype.workflow INFO:
[Job 1187] Cached (_threshold34).
231218-22:22:48,338 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 281 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:48,473 nipype.workflow INFO:
[Job 1188] Cached (_threshold35).
231218-22:22:48,474 nipype.workflow INFO:
[Job 1189] Cached (_threshold36).
231218-22:22:50,340 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 279 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:50,477 nipype.workflow INFO:
[Job 1190] Cached (_threshold37).
231218-22:22:50,478 nipype.workflow INFO:
[Job 1191] Cached (_threshold38).
231218-22:22:52,342 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 277 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:52,478 nipype.workflow INFO:
[Job 1192] Cached (_threshold39).
231218-22:22:52,480 nipype.workflow INFO:
[Job 1193] Cached (_threshold40).
231218-22:22:54,344 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 275 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:54,480 nipype.workflow INFO:
[Job 1194] Cached (_threshold41).
231218-22:22:54,481 nipype.workflow INFO:
[Job 1195] Cached (_threshold42).
231218-22:22:56,346 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 273 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:56,481 nipype.workflow INFO:
[Job 1196] Cached (_threshold43).
231218-22:22:56,482 nipype.workflow INFO:
[Job 1197] Cached (_threshold44).
231218-22:22:58,348 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 271 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:22:58,484 nipype.workflow INFO:
[Job 1198] Cached (_threshold45).
231218-22:22:58,486 nipype.workflow INFO:
[Job 1199] Cached (_threshold46).
231218-22:23:00,350 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 269 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:00,484 nipype.workflow INFO:
[Job 1200] Cached (_threshold47).
231218-22:23:00,485 nipype.workflow INFO:
[Job 1201] Cached (_threshold48).
231218-22:23:02,351 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 267 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:02,486 nipype.workflow INFO:
[Job 1202] Cached (_threshold49).
231218-22:23:02,487 nipype.workflow INFO:
[Job 1203] Cached (_threshold50).
231218-22:23:04,353 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 265 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:04,488 nipype.workflow INFO:
[Job 1204] Cached (_threshold51).
231218-22:23:04,489 nipype.workflow INFO:
[Job 1205] Cached (_threshold52).
231218-22:23:06,355 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 263 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:06,489 nipype.workflow INFO:
[Job 1206] Cached (_threshold53).
231218-22:23:06,490 nipype.workflow INFO:
[Job 1207] Cached (_threshold54).
231218-22:23:08,357 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 261 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:08,493 nipype.workflow INFO:
[Job 1208] Cached (_threshold55).
231218-22:23:08,494 nipype.workflow INFO:
[Job 1209] Cached (_threshold56).
231218-22:23:10,359 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 259 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:10,496 nipype.workflow INFO:
[Job 1210] Cached (_threshold57).
231218-22:23:10,497 nipype.workflow INFO:
[Job 1211] Cached (_threshold58).
231218-22:23:12,361 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 257 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:12,497 nipype.workflow INFO:
[Job 1212] Cached (_threshold59).
231218-22:23:12,498 nipype.workflow INFO:
[Job 1213] Cached (_threshold60).
231218-22:23:14,364 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 255 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:14,496 nipype.workflow INFO:
[Job 1214] Cached (_threshold61).
231218-22:23:14,497 nipype.workflow INFO:
[Job 1215] Cached (_threshold62).
231218-22:23:16,365 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 253 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:16,500 nipype.workflow INFO:
[Job 1216] Cached (_threshold63).
231218-22:23:16,501 nipype.workflow INFO:
[Job 1217] Cached (_threshold64).
231218-22:23:18,368 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 251 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:18,501 nipype.workflow INFO:
[Job 1218] Cached (_threshold65).
231218-22:23:18,502 nipype.workflow INFO:
[Job 1219] Cached (_threshold66).
231218-22:23:20,369 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 249 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:20,504 nipype.workflow INFO:
[Job 1220] Cached (_threshold67).
231218-22:23:20,505 nipype.workflow INFO:
[Job 1221] Cached (_threshold68).
231218-22:23:22,371 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 247 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:22,503 nipype.workflow INFO:
[Job 1222] Cached (_threshold69).
231218-22:23:22,504 nipype.workflow INFO:
[Job 1223] Cached (_threshold70).
231218-22:23:24,374 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 245 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:24,507 nipype.workflow INFO:
[Job 1224] Cached (_threshold71).
231218-22:23:24,508 nipype.workflow INFO:
[Job 1225] Cached (_threshold72).
231218-22:23:26,376 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 243 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:26,509 nipype.workflow INFO:
[Job 1226] Cached (_threshold73).
231218-22:23:26,510 nipype.workflow INFO:
[Job 1227] Cached (_threshold74).
231218-22:23:28,378 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 241 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:28,515 nipype.workflow INFO:
[Job 1228] Cached (_threshold75).
231218-22:23:28,517 nipype.workflow INFO:
[Job 1229] Cached (_threshold76).
231218-22:23:30,380 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 239 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:30,517 nipype.workflow INFO:
[Job 1230] Cached (_threshold77).
231218-22:23:30,518 nipype.workflow INFO:
[Job 1231] Cached (_threshold78).
231218-22:23:32,381 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 237 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:32,517 nipype.workflow INFO:
[Job 1232] Cached (_threshold79).
231218-22:23:32,518 nipype.workflow INFO:
[Job 1233] Cached (_threshold80).
231218-22:23:34,384 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 235 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:34,519 nipype.workflow INFO:
[Job 1234] Cached (_threshold81).
231218-22:23:34,521 nipype.workflow INFO:
[Job 1235] Cached (_threshold82).
231218-22:23:36,386 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 233 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:36,521 nipype.workflow INFO:
[Job 1236] Cached (_threshold83).
231218-22:23:36,522 nipype.workflow INFO:
[Job 1237] Cached (_threshold84).
231218-22:23:38,388 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 231 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:38,526 nipype.workflow INFO:
[Job 1238] Cached (_threshold85).
231218-22:23:38,527 nipype.workflow INFO:
[Job 1239] Cached (_threshold86).
231218-22:23:40,390 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 229 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:40,529 nipype.workflow INFO:
[Job 1240] Cached (_threshold87).
231218-22:23:40,530 nipype.workflow INFO:
[Job 1241] Cached (_threshold88).
231218-22:23:42,391 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 227 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:42,528 nipype.workflow INFO:
[Job 1242] Cached (_threshold89).
231218-22:23:42,529 nipype.workflow INFO:
[Job 1243] Cached (_threshold90).
231218-22:23:44,394 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 225 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:44,530 nipype.workflow INFO:
[Job 1244] Cached (_threshold91).
231218-22:23:44,531 nipype.workflow INFO:
[Job 1245] Cached (_threshold92).
231218-22:23:46,396 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 223 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:46,529 nipype.workflow INFO:
[Job 1246] Cached (_threshold93).
231218-22:23:46,531 nipype.workflow INFO:
[Job 1247] Cached (_threshold94).
231218-22:23:48,398 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 221 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:48,532 nipype.workflow INFO:
[Job 1248] Cached (_threshold95).
231218-22:23:48,533 nipype.workflow INFO:
[Job 1249] Cached (_threshold96).
231218-22:23:50,400 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 219 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:50,535 nipype.workflow INFO:
[Job 1250] Cached (_threshold97).
231218-22:23:50,536 nipype.workflow INFO:
[Job 1251] Cached (_threshold98).
231218-22:23:52,402 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 217 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:52,539 nipype.workflow INFO:
[Job 1252] Cached (_threshold99).
231218-22:23:52,540 nipype.workflow INFO:
[Job 1253] Cached (_threshold100).
231218-22:23:54,404 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 215 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:54,541 nipype.workflow INFO:
[Job 1254] Cached (_threshold101).
231218-22:23:54,542 nipype.workflow INFO:
[Job 1255] Cached (_threshold102).
231218-22:23:56,406 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 213 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:56,540 nipype.workflow INFO:
[Job 1256] Cached (_threshold103).
231218-22:23:56,541 nipype.workflow INFO:
[Job 1257] Cached (_threshold104).
231218-22:23:58,408 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 211 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:23:58,543 nipype.workflow INFO:
[Job 1258] Cached (_threshold105).
231218-22:23:58,545 nipype.workflow INFO:
[Job 1259] Cached (_threshold106).
231218-22:24:00,410 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 209 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:00,543 nipype.workflow INFO:
[Job 1260] Cached (_threshold107).
231218-22:24:00,544 nipype.workflow INFO:
[Job 1261] Cached (_threshold108).
231218-22:24:02,412 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 207 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:02,545 nipype.workflow INFO:
[Job 1262] Cached (_threshold109).
231218-22:24:02,546 nipype.workflow INFO:
[Job 1263] Cached (_threshold110).
231218-22:24:04,414 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 205 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:04,548 nipype.workflow INFO:
[Job 1264] Cached (_threshold111).
231218-22:24:04,549 nipype.workflow INFO:
[Job 1265] Cached (_threshold112).
231218-22:24:06,416 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 203 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:06,548 nipype.workflow INFO:
[Job 1266] Cached (_threshold113).
231218-22:24:06,549 nipype.workflow INFO:
[Job 1267] Cached (_threshold114).
231218-22:24:08,418 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 201 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:08,554 nipype.workflow INFO:
[Job 1268] Cached (_threshold115).
231218-22:24:08,555 nipype.workflow INFO:
[Job 1269] Cached (_threshold116).
231218-22:24:10,420 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 199 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:10,556 nipype.workflow INFO:
[Job 1270] Cached (_threshold117).
231218-22:24:10,557 nipype.workflow INFO:
[Job 1271] Cached (_threshold118).
231218-22:24:12,422 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 197 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:12,555 nipype.workflow INFO:
[Job 1272] Cached (_threshold119).
231218-22:24:12,556 nipype.workflow INFO:
[Job 1273] Cached (_threshold120).
231218-22:24:14,424 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 195 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:14,556 nipype.workflow INFO:
[Job 1274] Cached (_threshold121).
231218-22:24:14,558 nipype.workflow INFO:
[Job 1275] Cached (_threshold122).
231218-22:24:16,426 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 193 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:16,559 nipype.workflow INFO:
[Job 1276] Cached (_threshold123).
231218-22:24:16,560 nipype.workflow INFO:
[Job 1277] Cached (_threshold124).
231218-22:24:18,428 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 191 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:18,561 nipype.workflow INFO:
[Job 1278] Cached (_threshold125).
231218-22:24:18,563 nipype.workflow INFO:
[Job 1279] Cached (_threshold126).
231218-22:24:20,430 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 189 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:20,562 nipype.workflow INFO:
[Job 1280] Cached (_threshold127).
231218-22:24:20,563 nipype.workflow INFO:
[Job 1281] Cached (_threshold128).
231218-22:24:22,430 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 187 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:22,564 nipype.workflow INFO:
[Job 1282] Cached (_threshold129).
231218-22:24:22,565 nipype.workflow INFO:
[Job 1283] Cached (_threshold130).
231218-22:24:24,432 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 185 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:24,568 nipype.workflow INFO:
[Job 1284] Cached (_threshold131).
231218-22:24:24,569 nipype.workflow INFO:
[Job 1285] Cached (_threshold132).
231218-22:24:26,434 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 183 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:26,568 nipype.workflow INFO:
[Job 1286] Cached (_threshold133).
231218-22:24:26,569 nipype.workflow INFO:
[Job 1287] Cached (_threshold134).
231218-22:24:28,436 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 181 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:28,569 nipype.workflow INFO:
[Job 1288] Cached (_threshold135).
231218-22:24:28,570 nipype.workflow INFO:
[Job 1289] Cached (_threshold136).
231218-22:24:30,438 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 179 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:30,571 nipype.workflow INFO:
[Job 1290] Cached (_threshold137).
231218-22:24:30,572 nipype.workflow INFO:
[Job 1291] Cached (_threshold138).
231218-22:24:32,440 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 177 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:32,573 nipype.workflow INFO:
[Job 1292] Cached (_threshold139).
231218-22:24:32,574 nipype.workflow INFO:
[Job 1293] Cached (_threshold140).
231218-22:24:34,443 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 175 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:34,577 nipype.workflow INFO:
[Job 1294] Cached (_threshold141).
231218-22:24:34,578 nipype.workflow INFO:
[Job 1295] Cached (_threshold142).
231218-22:24:36,445 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 173 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:36,580 nipype.workflow INFO:
[Job 1296] Cached (_threshold143).
231218-22:24:36,581 nipype.workflow INFO:
[Job 1297] Cached (_threshold144).
231218-22:24:38,446 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 171 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:38,582 nipype.workflow INFO:
[Job 1298] Cached (_threshold145).
231218-22:24:38,583 nipype.workflow INFO:
[Job 1299] Cached (_threshold0).
231218-22:24:40,449 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 170 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:40,595 nipype.workflow INFO:
[Job 358] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.threshold).
231218-22:24:40,597 nipype.workflow INFO:
[Job 1300] Cached (_threshold1).
231218-22:24:42,450 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 169 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:42,602 nipype.workflow INFO:
[Job 367] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.merge).
231218-22:24:42,604 nipype.workflow INFO:
[Job 1301] Cached (_threshold2).
231218-22:24:44,451 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 173 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:44,587 nipype.workflow INFO:
[Job 384] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.val_bold).
231218-22:24:44,589 nipype.workflow INFO:
[Job 385] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.get_dummy).
231218-22:24:46,589 nipype.workflow INFO:
[Job 386] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.itk2lta).
231218-22:24:46,592 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_t1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_t1".
231218-22:24:46,595 nipype.workflow INFO:
[Node] Executing "ds_bold_t1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:24:48,158 nipype.workflow INFO:
[Node] Finished "ds_bold_t1", elapsed time 1.561451s.
231218-22:24:48,160 nipype.workflow INFO:
[Job 387] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_t1).
231218-22:24:48,299 nipype.workflow INFO:
[Job 388] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.rename_src).
231218-22:24:48,454 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 171 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:48,589 nipype.workflow INFO:
[Job 389] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.rename_src).
231218-22:24:48,592 nipype.workflow INFO:
[Job 408] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.calc_dummy_scans).
231218-22:24:50,592 nipype.workflow INFO:
[Job 409] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.gen_avg).
231218-22:24:50,607 nipype.workflow INFO:
[Job 1302] Cached (_threshold3).
231218-22:24:52,594 nipype.workflow INFO:
[Job 429] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:24:52,596 nipype.workflow INFO:
[Job 1303] Cached (_threshold4).
231218-22:24:54,595 nipype.workflow INFO:
[Job 446] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:24:54,598 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_t1_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_bold_t1_ref".
231218-22:24:54,601 nipype.workflow INFO:
[Node] Executing "ds_bold_t1_ref" <fmriprep.interfaces.DerivativesDataSink>
231218-22:24:54,670 nipype.workflow INFO:
[Node] Finished "ds_bold_t1_ref", elapsed time 0.06712s.
231218-22:24:54,672 nipype.workflow INFO:
[Job 447] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_t1_ref).
231218-22:24:54,808 nipype.workflow INFO:
[Job 1304] Cached (_threshold5).
231218-22:24:56,461 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 169 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:56,597 nipype.workflow INFO:
[Job 463] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:24:56,598 nipype.workflow INFO:
[Job 1305] Cached (_threshold6).
231218-22:24:58,462 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 168 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:24:58,601 nipype.workflow INFO:
[Job 481] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:24:58,602 nipype.workflow INFO:
[Job 1306] Cached (_threshold7).
231218-22:25:00,464 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 167 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:00,601 nipype.workflow INFO:
[Job 502] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:25:00,603 nipype.workflow INFO:
[Job 1307] Cached (_threshold8).
231218-22:25:02,466 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 166 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:02,607 nipype.workflow INFO:
[Job 508] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:25:02,608 nipype.workflow INFO:
[Job 1308] Cached (_threshold9).
231218-22:25:04,468 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 165 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:04,611 nipype.workflow INFO:
[Job 512] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:25:04,612 nipype.workflow INFO:
[Job 1309] Cached (_threshold10).
231218-22:25:06,470 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 164 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:06,605 nipype.workflow INFO:
[Job 516] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:25:06,606 nipype.workflow INFO:
[Job 1310] Cached (_threshold11).
231218-22:25:08,470 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 163 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:08,608 nipype.workflow INFO:
[Job 520] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:25:08,609 nipype.workflow INFO:
[Job 1311] Cached (_threshold12).
231218-22:25:10,471 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 162 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:10,609 nipype.workflow INFO:
[Job 524] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_t1_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:25:10,611 nipype.workflow INFO:
[Job 1312] Cached (_threshold13).
231218-22:25:12,473 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 160 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:12,608 nipype.workflow INFO:
[Job 1313] Cached (_threshold14).
231218-22:25:12,609 nipype.workflow INFO:
[Job 1314] Cached (_threshold15).
231218-22:25:14,475 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 158 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:14,608 nipype.workflow INFO:
[Job 1315] Cached (_threshold16).
231218-22:25:14,609 nipype.workflow INFO:
[Job 1316] Cached (_threshold17).
231218-22:25:16,475 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 156 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:16,617 nipype.workflow INFO:
[Job 1317] Cached (_threshold18).
231218-22:25:16,618 nipype.workflow INFO:
[Job 1318] Cached (_threshold19).
231218-22:25:18,477 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 154 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:18,613 nipype.workflow INFO:
[Job 1319] Cached (_threshold20).
231218-22:25:18,614 nipype.workflow INFO:
[Job 1320] Cached (_threshold21).
231218-22:25:20,479 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 152 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:20,610 nipype.workflow INFO:
[Job 1321] Cached (_threshold22).
231218-22:25:20,611 nipype.workflow INFO:
[Job 1322] Cached (_threshold23).
231218-22:25:22,481 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 150 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:22,618 nipype.workflow INFO:
[Job 1323] Cached (_threshold24).
231218-22:25:22,619 nipype.workflow INFO:
[Job 1324] Cached (_threshold25).
231218-22:25:24,483 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 148 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:24,617 nipype.workflow INFO:
[Job 1325] Cached (_threshold26).
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[Job 1326] Cached (_threshold27).
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[MultiProc] Running 0 tasks, and 146 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1327] Cached (_threshold28).
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[Job 1328] Cached (_threshold29).
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[MultiProc] Running 0 tasks, and 144 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1329] Cached (_threshold30).
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[Job 1330] Cached (_threshold31).
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[MultiProc] Running 0 tasks, and 142 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1331] Cached (_threshold32).
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[Job 1332] Cached (_threshold33).
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[MultiProc] Running 0 tasks, and 140 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1333] Cached (_threshold34).
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[Job 1334] Cached (_threshold35).
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[MultiProc] Running 0 tasks, and 138 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1335] Cached (_threshold36).
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[Job 1336] Cached (_threshold37).
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[MultiProc] Running 0 tasks, and 136 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1337] Cached (_threshold38).
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[MultiProc] Running 0 tasks, and 134 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1339] Cached (_threshold40).
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[Job 1340] Cached (_threshold41).
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[MultiProc] Running 0 tasks, and 132 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1341] Cached (_threshold42).
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[Job 1342] Cached (_threshold43).
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[MultiProc] Running 0 tasks, and 130 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1343] Cached (_threshold44).
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[Job 1344] Cached (_threshold45).
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[MultiProc] Running 0 tasks, and 128 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1345] Cached (_threshold46).
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[Job 1346] Cached (_threshold47).
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[MultiProc] Running 0 tasks, and 126 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1347] Cached (_threshold48).
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[Job 1348] Cached (_threshold49).
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[MultiProc] Running 0 tasks, and 124 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1349] Cached (_threshold50).
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[Job 1350] Cached (_threshold51).
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[MultiProc] Running 0 tasks, and 122 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1351] Cached (_threshold52).
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[Job 1352] Cached (_threshold53).
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[MultiProc] Running 0 tasks, and 120 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1353] Cached (_threshold54).
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[Job 1354] Cached (_threshold55).
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[MultiProc] Running 0 tasks, and 118 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1355] Cached (_threshold56).
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[Job 1356] Cached (_threshold57).
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[MultiProc] Running 0 tasks, and 116 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:56,647 nipype.workflow INFO:
[Job 1357] Cached (_threshold58).
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[Job 1358] Cached (_threshold59).
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[MultiProc] Running 0 tasks, and 114 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:25:58,648 nipype.workflow INFO:
[Job 1359] Cached (_threshold60).
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[Job 1360] Cached (_threshold61).
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[MultiProc] Running 0 tasks, and 112 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:00,652 nipype.workflow INFO:
[Job 1361] Cached (_threshold62).
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[Job 1362] Cached (_threshold63).
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[MultiProc] Running 0 tasks, and 110 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:02,654 nipype.workflow INFO:
[Job 1363] Cached (_threshold64).
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[Job 1364] Cached (_threshold65).
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[MultiProc] Running 0 tasks, and 108 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:04,648 nipype.workflow INFO:
[Job 1365] Cached (_threshold66).
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[Job 1366] Cached (_threshold67).
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[MultiProc] Running 0 tasks, and 106 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:06,658 nipype.workflow INFO:
[Job 1367] Cached (_threshold68).
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[Job 1368] Cached (_threshold69).
231218-22:26:08,527 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 104 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:08,669 nipype.workflow INFO:
[Job 1369] Cached (_threshold70).
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[Job 1370] Cached (_threshold71).
231218-22:26:10,527 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 102 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:10,663 nipype.workflow INFO:
[Job 1371] Cached (_threshold72).
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[Job 1372] Cached (_threshold73).
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[MultiProc] Running 0 tasks, and 100 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:12,667 nipype.workflow INFO:
[Job 1373] Cached (_threshold74).
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[Job 1374] Cached (_threshold75).
231218-22:26:14,530 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 98 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:14,665 nipype.workflow INFO:
[Job 1375] Cached (_threshold76).
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[Job 1376] Cached (_threshold77).
231218-22:26:16,532 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 96 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:16,668 nipype.workflow INFO:
[Job 1377] Cached (_threshold78).
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[Job 1378] Cached (_threshold79).
231218-22:26:18,534 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 94 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:18,663 nipype.workflow INFO:
[Job 1379] Cached (_threshold80).
231218-22:26:18,665 nipype.workflow INFO:
[Job 1380] Cached (_threshold81).
231218-22:26:20,536 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 92 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:20,672 nipype.workflow INFO:
[Job 1381] Cached (_threshold82).
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[Job 1382] Cached (_threshold83).
231218-22:26:22,539 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 90 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:22,676 nipype.workflow INFO:
[Job 1383] Cached (_threshold84).
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[Job 1384] Cached (_threshold85).
231218-22:26:24,540 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 88 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:24,672 nipype.workflow INFO:
[Job 1385] Cached (_threshold86).
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[Job 1386] Cached (_threshold87).
231218-22:26:26,542 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 86 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:26,677 nipype.workflow INFO:
[Job 1387] Cached (_threshold88).
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[Job 1388] Cached (_threshold89).
231218-22:26:28,544 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 84 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:28,679 nipype.workflow INFO:
[Job 1389] Cached (_threshold90).
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[Job 1390] Cached (_threshold91).
231218-22:26:30,546 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 82 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:30,687 nipype.workflow INFO:
[Job 1391] Cached (_threshold92).
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[Job 1392] Cached (_threshold93).
231218-22:26:32,548 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 80 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:32,686 nipype.workflow INFO:
[Job 1393] Cached (_threshold94).
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[Job 1394] Cached (_threshold95).
231218-22:26:34,551 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 78 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:34,707 nipype.workflow INFO:
[Job 1395] Cached (_threshold96).
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[Job 1396] Cached (_threshold97).
231218-22:26:36,553 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 76 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:36,710 nipype.workflow INFO:
[Job 1397] Cached (_threshold98).
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[Job 1398] Cached (_threshold99).
231218-22:26:38,552 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 74 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:38,691 nipype.workflow INFO:
[Job 1399] Cached (_threshold100).
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[Job 1400] Cached (_threshold101).
231218-22:26:40,555 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 72 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:40,694 nipype.workflow INFO:
[Job 1401] Cached (_threshold102).
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[Job 1402] Cached (_threshold103).
231218-22:26:42,557 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 70 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:42,694 nipype.workflow INFO:
[Job 1403] Cached (_threshold104).
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[Job 1404] Cached (_threshold105).
231218-22:26:44,559 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 68 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:44,692 nipype.workflow INFO:
[Job 1405] Cached (_threshold106).
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[Job 1406] Cached (_threshold107).
231218-22:26:46,561 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 66 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:46,697 nipype.workflow INFO:
[Job 1407] Cached (_threshold108).
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[Job 1408] Cached (_threshold109).
231218-22:26:48,562 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 64 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1409] Cached (_threshold110).
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[Job 1410] Cached (_threshold111).
231218-22:26:50,565 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 62 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:50,700 nipype.workflow INFO:
[Job 1411] Cached (_threshold112).
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[Job 1412] Cached (_threshold113).
231218-22:26:52,567 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 60 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:52,708 nipype.workflow INFO:
[Job 1413] Cached (_threshold114).
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[Job 1414] Cached (_threshold115).
231218-22:26:54,569 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 58 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:54,704 nipype.workflow INFO:
[Job 1415] Cached (_threshold116).
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[Job 1416] Cached (_threshold117).
231218-22:26:56,571 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 56 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:56,708 nipype.workflow INFO:
[Job 1417] Cached (_threshold118).
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[Job 1418] Cached (_threshold119).
231218-22:26:58,573 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 54 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:26:58,714 nipype.workflow INFO:
[Job 1419] Cached (_threshold120).
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[Job 1420] Cached (_threshold121).
231218-22:27:00,575 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 52 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:00,711 nipype.workflow INFO:
[Job 1421] Cached (_threshold122).
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[Job 1422] Cached (_threshold123).
231218-22:27:02,577 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 50 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:02,717 nipype.workflow INFO:
[Job 1423] Cached (_threshold124).
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[Job 1424] Cached (_threshold125).
231218-22:27:04,579 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 48 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1425] Cached (_threshold126).
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[Job 1426] Cached (_threshold127).
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[MultiProc] Running 0 tasks, and 46 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:06,716 nipype.workflow INFO:
[Job 1427] Cached (_threshold128).
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[Job 1428] Cached (_threshold129).
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[MultiProc] Running 0 tasks, and 44 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:08,718 nipype.workflow INFO:
[Job 1429] Cached (_threshold130).
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[Job 1430] Cached (_threshold131).
231218-22:27:10,585 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 42 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:10,721 nipype.workflow INFO:
[Job 1431] Cached (_threshold132).
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[Job 1432] Cached (_threshold133).
231218-22:27:12,586 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 40 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:12,729 nipype.workflow INFO:
[Job 1433] Cached (_threshold134).
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[Job 1434] Cached (_threshold135).
231218-22:27:14,588 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 38 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
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[Job 1435] Cached (_threshold136).
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[Job 1436] Cached (_threshold137).
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[MultiProc] Running 0 tasks, and 36 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:16,723 nipype.workflow INFO:
[Job 1437] Cached (_threshold138).
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[Job 1438] Cached (_threshold139).
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[MultiProc] Running 0 tasks, and 34 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:18,731 nipype.workflow INFO:
[Job 1439] Cached (_threshold140).
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[Job 1440] Cached (_threshold141).
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[MultiProc] Running 0 tasks, and 32 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:20,729 nipype.workflow INFO:
[Job 1441] Cached (_threshold142).
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[Job 1442] Cached (_threshold143).
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[MultiProc] Running 0 tasks, and 30 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:22,736 nipype.workflow INFO:
[Job 1443] Cached (_threshold144).
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[Job 1444] Cached (_threshold145).
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[MultiProc] Running 0 tasks, and 29 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:24,744 nipype.workflow INFO:
[Job 361] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.threshold).
231218-22:27:24,745 nipype.workflow INFO:
[Job 1445] Cached (_fix_surfs0).
231218-22:27:26,600 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 28 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:26,753 nipype.workflow INFO:
[Job 371] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.merge).
231218-22:27:26,755 nipype.workflow INFO:
[Job 1446] Cached (_fix_surfs1).
231218-22:27:28,741 nipype.workflow INFO:
[Job 395] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.val_bold).
231218-22:27:28,743 nipype.workflow INFO:
[Job 396] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.get_dummy).
231218-22:27:30,739 nipype.workflow INFO:
[Job 417] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.calc_dummy_scans).
231218-22:27:30,743 nipype.workflow INFO:
[Job 418] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.gen_avg).
231218-22:27:32,606 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 27 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:32,749 nipype.workflow INFO:
[Job 437] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.n4_correct).
231218-22:27:32,751 nipype.workflow INFO:
[Job 1447] Cached (_fix_surfs2).
231218-22:27:34,742 nipype.workflow INFO:
[Job 453] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_first_pass).
231218-22:27:34,747 nipype.workflow INFO:
[Job 454] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.outputnode).
231218-22:27:36,610 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 28 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:36,745 nipype.workflow INFO:
[Job 469] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_dilate).
231218-22:27:36,748 nipype.workflow INFO:
[Job 470] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.select_std).
231218-22:27:38,612 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 30 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:38,753 nipype.workflow INFO:
[Job 471] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.select_fs_std).
231218-22:27:38,756 nipype.workflow INFO:
[Job 487] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.first_mask).
231218-22:27:40,614 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 31 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:40,750 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_std".
231218-22:27:40,753 nipype.workflow INFO:
[Node] Executing "ds_bold_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:27:44,589 nipype.workflow INFO:
[Node] Finished "ds_bold_std", elapsed time 3.834693s.
231218-22:27:44,591 nipype.workflow INFO:
[Job 488] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_std).
231218-22:27:44,728 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_std_ref" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_std_ref".
231218-22:27:44,732 nipype.workflow INFO:
[Node] Executing "ds_bold_std_ref" <fmriprep.interfaces.DerivativesDataSink>
231218-22:27:44,876 nipype.workflow INFO:
[Node] Finished "ds_bold_std_ref", elapsed time 0.142144s.
231218-22:27:44,878 nipype.workflow INFO:
[Job 489] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_std_ref).
231218-22:27:45,40 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_mask_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_mask_std".
231218-22:27:45,44 nipype.workflow INFO:
[Node] Executing "ds_bold_mask_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:27:45,57 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-2_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz dtype from float64 to uint8
231218-22:27:45,88 nipype.workflow INFO:
[Node] Finished "ds_bold_mask_std", elapsed time 0.042065s.
231218-22:27:45,90 nipype.workflow INFO:
[Job 490] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_mask_std).
231218-22:27:45,252 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aseg_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_aseg_std".
231218-22:27:45,256 nipype.workflow INFO:
[Node] Executing "ds_bold_aseg_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:27:45,269 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-2_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz dtype from float64 to int16
231218-22:27:45,337 nipype.workflow INFO:
[Node] Finished "ds_bold_aseg_std", elapsed time 0.07966s.
231218-22:27:45,340 nipype.workflow INFO:
[Job 491] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aseg_std).
231218-22:27:45,500 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aparc_std" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_in_tuple_MNI152NLin2009cAsym.resnative/ds_bold_aparc_std".
231218-22:27:45,504 nipype.workflow INFO:
[Node] Executing "ds_bold_aparc_std" <fmriprep.interfaces.DerivativesDataSink>
231218-22:27:45,516 nipype.interface WARNING:
Changing /home/jovyan/example-notebooks/books/functional_imaging/content/sub-08/func/sub-08_task-flanker_run-2_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz dtype from float64 to int16
231218-22:27:45,565 nipype.workflow INFO:
[Node] Finished "ds_bold_aparc_std", elapsed time 0.059524s.
231218-22:27:45,567 nipype.workflow INFO:
[Job 492] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_aparc_std).
231218-22:27:45,725 nipype.workflow INFO:
[Job 505] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.unifize).
231218-22:27:45,726 nipype.workflow INFO:
[Job 1448] Cached (_fix_surfs3).
231218-22:27:45,734 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 25 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:45,893 nipype.workflow INFO:
[Job 509] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_unifize).
231218-22:27:45,895 nipype.workflow INFO:
[Job 1449] Cached (_fix_surfs4).
231218-22:27:47,736 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 24 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:47,895 nipype.workflow INFO:
[Job 513] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.skullstrip_second_pass).
231218-22:27:47,897 nipype.workflow INFO:
[Job 1450] Cached (_fix_surfs5).
231218-22:27:49,739 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 23 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:49,899 nipype.workflow INFO:
[Job 517] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.fixhdr_skullstrip2).
231218-22:27:49,901 nipype.workflow INFO:
[Job 1451] Cached (_fix_surfs6).
231218-22:27:51,741 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:51,900 nipype.workflow INFO:
[Job 521] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.combine_masks).
231218-22:27:51,902 nipype.workflow INFO:
[Job 1452] Cached (_fix_surfs7).
231218-22:27:53,904 nipype.workflow INFO:
[Job 267] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.surface_recon_wf.gifti_surface_wf.fix_surfs).
231218-22:27:53,907 nipype.workflow INFO:
[Job 525] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_std_trans_wf.bold_reference_wf.enhance_and_skullstrip_bold_wf.apply_mask).
231218-22:27:55,745 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:55,922 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs0".
231218-22:27:55,926 nipype.workflow INFO:
[Node] Executing "_ds_morphs0" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:55,931 nipype.workflow INFO:
[Node] Finished "_ds_morphs0", elapsed time 0.004235s.
231218-22:27:55,934 nipype.workflow INFO:
[Job 1453] Completed (_ds_morphs0).
231218-22:27:56,91 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs1".
231218-22:27:56,95 nipype.workflow INFO:
[Node] Executing "_ds_morphs1" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:56,100 nipype.workflow INFO:
[Node] Finished "_ds_morphs1", elapsed time 0.003647s.
231218-22:27:56,102 nipype.workflow INFO:
[Job 1454] Completed (_ds_morphs1).
231218-22:27:56,238 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs2".
231218-22:27:56,241 nipype.workflow INFO:
[Node] Executing "_ds_morphs2" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:56,246 nipype.workflow INFO:
[Node] Finished "_ds_morphs2", elapsed time 0.003414s.
231218-22:27:56,248 nipype.workflow INFO:
[Job 1455] Completed (_ds_morphs2).
231218-22:27:56,385 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs3" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs3".
231218-22:27:56,388 nipype.workflow INFO:
[Node] Executing "_ds_morphs3" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:56,393 nipype.workflow INFO:
[Node] Finished "_ds_morphs3", elapsed time 0.003291s.
231218-22:27:56,395 nipype.workflow INFO:
[Job 1456] Completed (_ds_morphs3).
231218-22:27:56,530 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs4" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs4".
231218-22:27:56,533 nipype.workflow INFO:
[Node] Executing "_ds_morphs4" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:56,538 nipype.workflow INFO:
[Node] Finished "_ds_morphs4", elapsed time 0.003262s.
231218-22:27:56,540 nipype.workflow INFO:
[Job 1457] Completed (_ds_morphs4).
231218-22:27:56,676 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs5" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs5".
231218-22:27:56,680 nipype.workflow INFO:
[Node] Executing "_ds_morphs5" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:56,684 nipype.workflow INFO:
[Node] Finished "_ds_morphs5", elapsed time 0.003077s.
231218-22:27:56,686 nipype.workflow INFO:
[Job 1458] Completed (_ds_morphs5).
231218-22:27:56,822 nipype.workflow INFO:
[Job 1459] Cached (_acc_msk_brain0).
231218-22:27:56,823 nipype.workflow INFO:
[Job 1460] Cached (_acc_msk_brain1).
231218-22:27:57,743 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:57,892 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs0".
231218-22:27:57,895 nipype.workflow INFO:
[Node] Executing "_ds_morphs0" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:57,900 nipype.workflow INFO:
[Node] Finished "_ds_morphs0", elapsed time 0.003414s.
231218-22:27:57,903 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs1".
231218-22:27:57,906 nipype.workflow INFO:
[Node] Executing "_ds_morphs1" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:57,910 nipype.workflow INFO:
[Node] Finished "_ds_morphs1", elapsed time 0.002995s.
231218-22:27:57,913 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs2".
231218-22:27:57,916 nipype.workflow INFO:
[Node] Executing "_ds_morphs2" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:57,920 nipype.workflow INFO:
[Node] Finished "_ds_morphs2", elapsed time 0.002912s.
231218-22:27:57,924 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs3" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs3".
231218-22:27:57,927 nipype.workflow INFO:
[Node] Executing "_ds_morphs3" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:57,931 nipype.workflow INFO:
[Node] Finished "_ds_morphs3", elapsed time 0.003134s.
231218-22:27:57,934 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs4" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs4".
231218-22:27:57,937 nipype.workflow INFO:
[Node] Executing "_ds_morphs4" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:57,941 nipype.workflow INFO:
[Node] Finished "_ds_morphs4", elapsed time 0.00312s.
231218-22:27:57,945 nipype.workflow INFO:
[Node] Setting-up "_ds_morphs5" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_morphs/mapflow/_ds_morphs5".
231218-22:27:57,948 nipype.workflow INFO:
[Node] Executing "_ds_morphs5" <smriprep.interfaces.DerivativesDataSink>
231218-22:27:57,952 nipype.workflow INFO:
[Node] Finished "_ds_morphs5", elapsed time 0.002855s.
231218-22:27:57,956 nipype.workflow INFO:
[Job 259] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_morphs).
231218-22:27:58,91 nipype.workflow INFO:
[Job 1461] Cached (_acc_msk_brain2).
231218-22:27:58,92 nipype.workflow INFO:
[Job 1462] Cached (_sampler0).
231218-22:27:59,745 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:27:59,881 nipype.workflow INFO:
[Job 338] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acc_msk_brain).
231218-22:27:59,884 nipype.workflow INFO:
[Job 1463] Cached (_sampler1).
231218-22:28:01,898 nipype.workflow INFO:
[Job 401] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.sampler).
231218-22:28:01,900 nipype.workflow INFO:
[Job 1464] Cached (_sampler0).
231218-22:28:03,749 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 20 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:03,894 nipype.workflow INFO:
[Job 1465] Cached (_sampler1).
231218-22:28:03,895 nipype.workflow INFO:
[Job 1466] Cached (_acc_msk_brain0).
231218-22:28:05,890 nipype.workflow INFO:
[Job 402] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.sampler).
231218-22:28:05,892 nipype.workflow INFO:
[Job 1467] Cached (_acc_msk_brain1).
231218-22:28:07,753 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:07,899 nipype.workflow INFO:
[Job 1468] Cached (_acc_msk_brain2).
231218-22:28:07,901 nipype.workflow INFO:
[Job 1469] Cached (_sampler0).
231218-22:28:09,892 nipype.workflow INFO:
[Job 342] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acc_msk_brain).
231218-22:28:09,894 nipype.workflow INFO:
[Job 1470] Cached (_sampler1).
231218-22:28:11,908 nipype.workflow INFO:
[Job 410] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.sampler).
231218-22:28:11,910 nipype.workflow INFO:
[Job 1471] Cached (_sampler0).
231218-22:28:13,760 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 20 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:13,911 nipype.workflow INFO:
[Job 1472] Cached (_sampler1).
231218-22:28:13,912 nipype.workflow INFO:
[Job 1473] Cached (_name_surfs0).
231218-22:28:15,902 nipype.workflow INFO:
[Job 411] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.sampler).
231218-22:28:15,904 nipype.workflow INFO:
[Job 1474] Cached (_name_surfs1).
231218-22:28:17,765 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:17,925 nipype.workflow INFO:
[Job 1475] Cached (_name_surfs2).
231218-22:28:17,926 nipype.workflow INFO:
[Job 1476] Cached (_name_surfs3).
231218-22:28:19,766 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:19,902 nipype.workflow INFO:
[Job 1477] Cached (_name_surfs4).
231218-22:28:19,903 nipype.workflow INFO:
[Job 1478] Cached (_name_surfs5).
231218-22:28:21,767 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:21,903 nipype.workflow INFO:
[Job 1479] Cached (_name_surfs6).
231218-22:28:21,904 nipype.workflow INFO:
[Job 1480] Cached (_name_surfs7).
231218-22:28:23,769 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:23,907 nipype.workflow INFO:
[Job 279] Cached (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.name_surfs).
231218-22:28:23,908 nipype.workflow INFO:
[Job 1481] Cached (_acc_msk_bin0).
231218-22:28:25,771 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:25,935 nipype.workflow INFO:
[Job 1482] Cached (_acc_msk_bin1).
231218-22:28:25,936 nipype.workflow INFO:
[Job 1483] Cached (_acc_msk_bin2).
231218-22:28:27,773 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 20 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:27,911 nipype.workflow INFO:
[Job 356] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acc_msk_bin).
231218-22:28:27,913 nipype.workflow INFO:
[Job 1484] Cached (_update_metadata0).
231218-22:28:29,775 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:29,914 nipype.workflow INFO:
[Job 365] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acompcor).
231218-22:28:29,918 nipype.workflow INFO:
[Job 366] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.merge_rois).
231218-22:28:31,777 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:31,916 nipype.workflow INFO:
[Job 380] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.mrg_compcor).
231218-22:28:31,918 nipype.workflow INFO:
[Job 382] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.rename_acompcor).
231218-22:28:33,916 nipype.workflow INFO:
[Job 383] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.signals).
231218-22:28:33,919 nipype.workflow INFO:
[Job 404] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.merge_compcor_metadata).
231218-22:28:35,919 nipype.workflow INFO:
[Job 405] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.rois_plot).
231218-22:28:35,921 nipype.workflow INFO:
[Job 406] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acc_metadata_filter).
231218-22:28:37,924 nipype.workflow INFO:
[Job 407] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.concat).
231218-22:28:37,927 nipype.workflow INFO:
[Job 424] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.compcor_plot).
231218-22:28:39,785 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 23 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:39,923 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.ds_report_bold_rois" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/bold_confounds_wf/ds_report_bold_rois".
231218-22:28:39,927 nipype.workflow INFO:
[Node] Executing "ds_report_bold_rois" <fmriprep.interfaces.DerivativesDataSink>
231218-22:28:39,933 nipype.workflow INFO:
[Node] Finished "ds_report_bold_rois", elapsed time 0.005357s.
231218-22:28:39,935 nipype.workflow INFO:
[Job 425] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.ds_report_bold_rois).
231218-22:28:40,73 nipype.workflow INFO:
[Job 426] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.acc_metadata_fmt).
231218-22:28:40,76 nipype.workflow INFO:
[Job 427] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.model_expansion).
231218-22:28:41,787 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 22 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:41,933 nipype.workflow INFO:
[Job 428] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.conf_corr_plot).
231218-22:28:41,936 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.ds_report_compcor" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/bold_confounds_wf/ds_report_compcor".
231218-22:28:41,939 nipype.workflow INFO:
[Node] Executing "ds_report_compcor" <fmriprep.interfaces.DerivativesDataSink>
231218-22:28:41,945 nipype.workflow INFO:
[Node] Finished "ds_report_compcor", elapsed time 0.00518s.
231218-22:28:41,947 nipype.workflow INFO:
[Job 442] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.ds_report_compcor).
231218-22:28:42,107 nipype.workflow INFO:
[Job 443] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.merge_confound_metadata).
231218-22:28:43,789 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:43,926 nipype.workflow INFO:
[Job 444] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.spike_regressors).
231218-22:28:43,928 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.ds_report_conf_corr" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/bold_confounds_wf/ds_report_conf_corr".
231218-22:28:43,931 nipype.workflow INFO:
[Node] Executing "ds_report_conf_corr" <fmriprep.interfaces.DerivativesDataSink>
231218-22:28:43,938 nipype.workflow INFO:
[Node] Finished "ds_report_conf_corr", elapsed time 0.005239s.
231218-22:28:43,939 nipype.workflow INFO:
[Job 445] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.ds_report_conf_corr).
231218-22:28:44,97 nipype.workflow INFO:
[Job 460] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_confounds_wf.merge_confound_metadata2).
231218-22:28:45,791 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 21 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:45,930 nipype.workflow INFO:
[Job 461] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_wf.conf_plot).
231218-22:28:45,934 nipype.workflow INFO:
[Job 462] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.summary).
231218-22:28:47,951 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_confounds" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/ds_confounds".
231218-22:28:47,980 nipype.workflow INFO:
[Node] Executing "ds_confounds" <fmriprep.interfaces.DerivativesDataSink>
231218-22:28:47,990 nipype.workflow INFO:
[Node] Finished "ds_confounds", elapsed time 0.008998s.
231218-22:28:47,998 nipype.workflow INFO:
[Job 478] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_confounds).
231218-22:28:48,138 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_wf.ds_report_bold_conf" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/carpetplot_wf/ds_report_bold_conf".
231218-22:28:48,142 nipype.workflow INFO:
[Node] Executing "ds_report_bold_conf" <fmriprep.interfaces.DerivativesDataSink>
231218-22:28:48,148 nipype.workflow INFO:
[Node] Finished "ds_report_bold_conf", elapsed time 0.004977s.
231218-22:28:48,150 nipype.workflow INFO:
[Job 479] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.carpetplot_wf.ds_report_bold_conf).
231218-22:28:48,287 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.ds_report_summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/ds_report_summary".
231218-22:28:48,290 nipype.workflow INFO:
[Node] Executing "ds_report_summary" <fmriprep.interfaces.DerivativesDataSink>
231218-22:28:48,297 nipype.workflow INFO:
[Node] Finished "ds_report_summary", elapsed time 0.005125s.
231218-22:28:48,299 nipype.workflow INFO:
[Job 480] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.ds_report_summary).
231218-22:28:48,433 nipype.workflow INFO:
[Job 1485] Cached (_update_metadata1).
231218-22:28:48,434 nipype.workflow INFO:
[Job 1486] Cached (_update_metadata0).
231218-22:28:49,795 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:49,934 nipype.workflow INFO:
[Job 422] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.update_metadata).
231218-22:28:49,936 nipype.workflow INFO:
[Job 1487] Cached (_update_metadata1).
231218-22:28:51,797 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:51,935 nipype.workflow INFO:
[Job 423] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.update_metadata).
231218-22:28:51,937 nipype.workflow INFO:
[Job 1488] Cached (_acc_msk_bin0).
231218-22:28:53,799 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 15 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:53,937 nipype.workflow INFO:
[Job 441] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.bold_surf_wf.outputnode).
231218-22:28:53,938 nipype.workflow INFO:
[Job 1489] Cached (_acc_msk_bin1).
231218-22:28:55,942 nipype.workflow INFO:
[Job 458] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.select_fs_surf).
231218-22:28:55,944 nipype.workflow INFO:
[Job 459] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.select_fs_surf).
231218-22:28:57,958 nipype.workflow INFO:
[Job 1490] Cached (_acc_msk_bin2).
231218-22:28:57,958 nipype.workflow INFO:
[Job 1491] Cached (_update_metadata0).
231218-22:28:59,805 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 16 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:28:59,943 nipype.workflow INFO:
[Job 360] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acc_msk_bin).
231218-22:28:59,944 nipype.workflow INFO:
[Job 1492] Cached (_update_metadata1).
231218-22:29:01,807 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:01,948 nipype.workflow INFO:
[Job 369] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acompcor).
231218-22:29:01,952 nipype.workflow INFO:
[Job 370] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.merge_rois).
231218-22:29:03,809 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 19 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:03,947 nipype.workflow INFO:
[Job 391] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.mrg_compcor).
231218-22:29:03,949 nipype.workflow INFO:
[Job 393] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.rename_acompcor).
231218-22:29:05,949 nipype.workflow INFO:
[Job 394] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.signals).
231218-22:29:05,952 nipype.workflow INFO:
[Job 413] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.merge_compcor_metadata).
231218-22:29:07,951 nipype.workflow INFO:
[Job 414] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.rois_plot).
231218-22:29:07,953 nipype.workflow INFO:
[Job 415] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acc_metadata_filter).
231218-22:29:09,956 nipype.workflow INFO:
[Job 416] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.concat).
231218-22:29:09,959 nipype.workflow INFO:
[Job 430] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.update_metadata).
231218-22:29:11,954 nipype.workflow INFO:
[Job 432] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.compcor_plot).
231218-22:29:11,957 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.ds_report_bold_rois" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/bold_confounds_wf/ds_report_bold_rois".
231218-22:29:11,960 nipype.workflow INFO:
[Node] Executing "ds_report_bold_rois" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:11,966 nipype.workflow INFO:
[Node] Finished "ds_report_bold_rois", elapsed time 0.005315s.
231218-22:29:11,968 nipype.workflow INFO:
[Job 433] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.ds_report_bold_rois).
231218-22:29:12,108 nipype.workflow INFO:
[Job 434] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.acc_metadata_fmt).
231218-22:29:13,818 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:13,956 nipype.workflow INFO:
[Job 435] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.model_expansion).
231218-22:29:13,966 nipype.workflow INFO:
[Job 436] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.conf_corr_plot).
231218-22:29:15,958 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.ds_report_compcor" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/bold_confounds_wf/ds_report_compcor".
231218-22:29:15,961 nipype.workflow INFO:
[Node] Executing "ds_report_compcor" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:15,968 nipype.workflow INFO:
[Node] Finished "ds_report_compcor", elapsed time 0.005052s.
231218-22:29:15,969 nipype.workflow INFO:
[Job 449] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.ds_report_compcor).
231218-22:29:16,131 nipype.workflow INFO:
[Job 450] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.merge_confound_metadata).
231218-22:29:16,133 nipype.workflow INFO:
[Job 451] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.spike_regressors).
231218-22:29:17,821 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 18 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:17,962 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.ds_report_conf_corr" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/bold_confounds_wf/ds_report_conf_corr".
231218-22:29:17,965 nipype.workflow INFO:
[Node] Executing "ds_report_conf_corr" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:17,971 nipype.workflow INFO:
[Node] Finished "ds_report_conf_corr", elapsed time 0.00517s.
231218-22:29:17,973 nipype.workflow INFO:
[Job 452] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.ds_report_conf_corr).
231218-22:29:18,132 nipype.workflow INFO:
[Job 466] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_confounds_wf.merge_confound_metadata2).
231218-22:29:18,135 nipype.workflow INFO:
[Job 467] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_wf.conf_plot).
231218-22:29:19,823 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 17 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:19,963 nipype.workflow INFO:
[Job 468] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.summary).
231218-22:29:19,986 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_confounds" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/ds_confounds".
231218-22:29:20,14 nipype.workflow INFO:
[Node] Executing "ds_confounds" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:20,25 nipype.workflow INFO:
[Node] Finished "ds_confounds", elapsed time 0.009074s.
231218-22:29:20,32 nipype.workflow INFO:
[Job 484] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_confounds).
231218-22:29:20,175 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_wf.ds_report_bold_conf" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/carpetplot_wf/ds_report_bold_conf".
231218-22:29:20,178 nipype.workflow INFO:
[Node] Executing "ds_report_bold_conf" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:20,185 nipype.workflow INFO:
[Node] Finished "ds_report_bold_conf", elapsed time 0.005176s.
231218-22:29:20,187 nipype.workflow INFO:
[Job 485] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.carpetplot_wf.ds_report_bold_conf).
231218-22:29:20,327 nipype.workflow INFO:
[Job 1493] Cached (_update_metadata0).
231218-22:29:21,824 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 14 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:21,965 nipype.workflow INFO:
[Node] Setting-up "fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.ds_report_summary" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/ds_report_summary".
231218-22:29:21,968 nipype.workflow INFO:
[Node] Executing "ds_report_summary" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:21,974 nipype.workflow INFO:
[Node] Finished "ds_report_summary", elapsed time 0.005086s.
231218-22:29:21,976 nipype.workflow INFO:
[Job 486] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.ds_report_summary).
231218-22:29:22,115 nipype.workflow INFO:
[Job 1494] Cached (_update_metadata1).
231218-22:29:22,117 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs0".
231218-22:29:22,120 nipype.workflow INFO:
[Node] Executing "_ds_surfs0" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:22,124 nipype.workflow INFO:
[Node] Finished "_ds_surfs0", elapsed time 0.003249s.
231218-22:29:22,126 nipype.workflow INFO:
[Job 1495] Completed (_ds_surfs0).
231218-22:29:22,266 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs1".
231218-22:29:22,270 nipype.workflow INFO:
[Node] Executing "_ds_surfs1" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:22,274 nipype.workflow INFO:
[Node] Finished "_ds_surfs1", elapsed time 0.003296s.
231218-22:29:22,276 nipype.workflow INFO:
[Job 1496] Completed (_ds_surfs1).
231218-22:29:22,415 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs2".
231218-22:29:22,418 nipype.workflow INFO:
[Node] Executing "_ds_surfs2" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:22,422 nipype.workflow INFO:
[Node] Finished "_ds_surfs2", elapsed time 0.003314s.
231218-22:29:22,424 nipype.workflow INFO:
[Job 1497] Completed (_ds_surfs2).
231218-22:29:22,563 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs3" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs3".
231218-22:29:22,566 nipype.workflow INFO:
[Node] Executing "_ds_surfs3" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:22,570 nipype.workflow INFO:
[Node] Finished "_ds_surfs3", elapsed time 0.003198s.
231218-22:29:22,572 nipype.workflow INFO:
[Job 1498] Completed (_ds_surfs3).
231218-22:29:22,714 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs4" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs4".
231218-22:29:22,717 nipype.workflow INFO:
[Node] Executing "_ds_surfs4" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:22,722 nipype.workflow INFO:
[Node] Finished "_ds_surfs4", elapsed time 0.003304s.
231218-22:29:22,724 nipype.workflow INFO:
[Job 1499] Completed (_ds_surfs4).
231218-22:29:22,863 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs5" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs5".
231218-22:29:22,866 nipype.workflow INFO:
[Node] Executing "_ds_surfs5" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:22,871 nipype.workflow INFO:
[Node] Finished "_ds_surfs5", elapsed time 0.00318s.
231218-22:29:22,873 nipype.workflow INFO:
[Job 1500] Completed (_ds_surfs5).
231218-22:29:23,17 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs6" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs6".
231218-22:29:23,20 nipype.workflow INFO:
[Node] Executing "_ds_surfs6" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:23,24 nipype.workflow INFO:
[Node] Finished "_ds_surfs6", elapsed time 0.003279s.
231218-22:29:23,26 nipype.workflow INFO:
[Job 1501] Completed (_ds_surfs6).
231218-22:29:23,165 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs7" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs7".
231218-22:29:23,169 nipype.workflow INFO:
[Node] Executing "_ds_surfs7" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:23,173 nipype.workflow INFO:
[Node] Finished "_ds_surfs7", elapsed time 0.003201s.
231218-22:29:23,175 nipype.workflow INFO:
[Job 1502] Completed (_ds_surfs7).
231218-22:29:23,313 nipype.workflow INFO:
[Job 1503] Cached (_name_surfs0).
231218-22:29:23,825 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:23,980 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs0".
231218-22:29:23,983 nipype.workflow INFO:
[Node] Executing "_ds_surfs0" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:23,987 nipype.workflow INFO:
[Node] Finished "_ds_surfs0", elapsed time 0.003396s.
231218-22:29:23,991 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs1".
231218-22:29:23,994 nipype.workflow INFO:
[Node] Executing "_ds_surfs1" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:23,999 nipype.workflow INFO:
[Node] Finished "_ds_surfs1", elapsed time 0.00306s.
231218-22:29:24,2 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs2" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs2".
231218-22:29:24,5 nipype.workflow INFO:
[Node] Executing "_ds_surfs2" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:24,9 nipype.workflow INFO:
[Node] Finished "_ds_surfs2", elapsed time 0.003063s.
231218-22:29:24,13 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs3" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs3".
231218-22:29:24,16 nipype.workflow INFO:
[Node] Executing "_ds_surfs3" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:24,20 nipype.workflow INFO:
[Node] Finished "_ds_surfs3", elapsed time 0.00301s.
231218-22:29:24,23 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs4" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs4".
231218-22:29:24,26 nipype.workflow INFO:
[Node] Executing "_ds_surfs4" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:24,30 nipype.workflow INFO:
[Node] Finished "_ds_surfs4", elapsed time 0.002989s.
231218-22:29:24,34 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs5" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs5".
231218-22:29:24,37 nipype.workflow INFO:
[Node] Executing "_ds_surfs5" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:24,41 nipype.workflow INFO:
[Node] Finished "_ds_surfs5", elapsed time 0.002755s.
231218-22:29:24,44 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs6" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs6".
231218-22:29:24,47 nipype.workflow INFO:
[Node] Executing "_ds_surfs6" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:24,50 nipype.workflow INFO:
[Node] Finished "_ds_surfs6", elapsed time 0.002678s.
231218-22:29:24,54 nipype.workflow INFO:
[Node] Setting-up "_ds_surfs7" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/anat_preproc_wf/anat_derivatives_wf/ds_surfs/mapflow/_ds_surfs7".
231218-22:29:24,57 nipype.workflow INFO:
[Node] Executing "_ds_surfs7" <smriprep.interfaces.DerivativesDataSink>
231218-22:29:24,61 nipype.workflow INFO:
[Node] Finished "_ds_surfs7", elapsed time 0.003156s.
231218-22:29:24,66 nipype.workflow INFO:
[Job 296] Completed (fmriprep_22_1_wf.single_subject_08_wf.anat_preproc_wf.anat_derivatives_wf.ds_surfs).
231218-22:29:24,206 nipype.workflow INFO:
[Job 431] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.update_metadata).
231218-22:29:24,207 nipype.workflow INFO:
[Job 1504] Cached (_name_surfs1).
231218-22:29:25,826 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:25,966 nipype.workflow INFO:
[Job 448] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.bold_surf_wf.outputnode).
231218-22:29:25,969 nipype.workflow INFO:
[Job 476] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.name_surfs).
231218-22:29:27,828 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:27,969 nipype.workflow INFO:
[Job 464] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.select_fs_surf).
231218-22:29:27,971 nipype.workflow INFO:
[Job 465] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.select_fs_surf).
231218-22:29:29,830 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 6 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:29,988 nipype.workflow INFO:
[Job 1505] Cached (_name_surfs0).
231218-22:29:29,988 nipype.workflow INFO:
[Job 1506] Cached (_name_surfs1).
231218-22:29:31,832 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 7 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:31,973 nipype.workflow INFO:
[Job 477] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.name_surfs).
231218-22:29:31,975 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:31,978 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:31,984 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs0", elapsed time 0.004942s.
231218-22:29:31,986 nipype.workflow INFO:
[Job 1507] Completed (_ds_bold_surfs0).
231218-22:29:32,126 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:32,130 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:32,135 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs1", elapsed time 0.004695s.
231218-22:29:32,137 nipype.workflow INFO:
[Job 1508] Completed (_ds_bold_surfs1).
231218-22:29:32,277 nipype.workflow INFO:
[Job 1509] Cached (_name_surfs0).
231218-22:29:33,834 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 5 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:33,985 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:33,988 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:33,994 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs0", elapsed time 0.004642s.
231218-22:29:33,998 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:34,1 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:34,6 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs1", elapsed time 0.004236s.
231218-22:29:34,10 nipype.workflow INFO:
[Job 500] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_surfs).
231218-22:29:34,166 nipype.workflow INFO:
[Job 1510] Cached (_name_surfs1).
231218-22:29:34,167 nipype.workflow INFO:
[Job 1511] Cached (_name_surfs0).
231218-22:29:35,835 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:35,982 nipype.workflow INFO:
[Job 482] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.name_surfs).
231218-22:29:35,983 nipype.workflow INFO:
[Job 1512] Cached (_name_surfs1).
231218-22:29:37,978 nipype.workflow INFO:
[Job 483] Cached (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.name_surfs).
231218-22:29:37,995 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:37,998 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:38,4 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs0", elapsed time 0.004986s.
231218-22:29:38,6 nipype.workflow INFO:
[Job 1513] Completed (_ds_bold_surfs0).
231218-22:29:38,148 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:38,151 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:38,157 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs1", elapsed time 0.004797s.
231218-22:29:38,162 nipype.workflow INFO:
[Job 1514] Completed (_ds_bold_surfs1).
231218-22:29:39,840 nipype.workflow INFO:
[MultiProc] Running 0 tasks, and 4 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:39,999 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:40,2 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:40,8 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs0", elapsed time 0.004847s.
231218-22:29:40,11 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_1_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:40,14 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
231218-22:29:40,19 nipype.workflow INFO:
[Node] Finished "_ds_bold_surfs1", elapsed time 0.00414s.
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[Job 501] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_1_wf.func_derivatives_wf.ds_bold_surfs).
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[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs0".
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[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
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[Job 1515] Completed (_ds_bold_surfs0).
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[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:40,343 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs1", elapsed time 0.004548s.
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[Job 1516] Completed (_ds_bold_surfs1).
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[MultiProc] Running 0 tasks, and 3 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:41,995 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:41,998 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs0", elapsed time 0.005331s.
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[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsaverage/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:42,11 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs1", elapsed time 0.004166s.
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[Job 503] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_surfs).
231218-22:29:42,155 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:42,158 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs0", elapsed time 0.004629s.
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[Job 1517] Completed (_ds_bold_surfs0).
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[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:42,309 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs1", elapsed time 0.004528s.
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[Job 1518] Completed (_ds_bold_surfs1).
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[MultiProc] Running 0 tasks, and 1 jobs ready. Free memory (GB): 10.00/10.00, Free processors: 2/2.
231218-22:29:43,994 nipype.workflow INFO:
[Node] Setting-up "_ds_bold_surfs0" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs0".
231218-22:29:43,997 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs0" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs0", elapsed time 0.00493s.
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[Node] Setting-up "_ds_bold_surfs1" in "/home/jovyan/example-notebooks/books/functional_imaging/work/fmriprep_22_1_wf/single_subject_08_wf/func_preproc_task_flanker_run_2_wf/func_derivatives_wf/_key_fsnative/ds_bold_surfs/mapflow/_ds_bold_surfs1".
231218-22:29:44,10 nipype.workflow INFO:
[Node] Executing "_ds_bold_surfs1" <fmriprep.interfaces.DerivativesDataSink>
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[Node] Finished "_ds_bold_surfs1", elapsed time 0.004308s.
231218-22:29:44,20 nipype.workflow INFO:
[Job 504] Completed (fmriprep_22_1_wf.single_subject_08_wf.func_preproc_task_flanker_run_2_wf.func_derivatives_wf.ds_bold_surfs).
231218-22:29:45,868 nipype.workflow IMPORTANT:
fMRIPrep finished successfully!
231218-22:29:45,875 nipype.workflow IMPORTANT:
Works derived from this fMRIPrep execution should include the boilerplate text found in <OUTPUT_PATH>/logs/CITATION.md.
fMRIprep Results#
The full result report is in content/sub-08.html and you can open this webpage in Jupyterlab or in the browser. Here a few items from the report as an example and for quickly checking:
T1 and brain mask#
Template T1-weighted image (if several T1w images were found), with contours delineating the detected brain mask and brain tissue segmentations.
from IPython.core.display import SVG
SVG(filename='content/sub-08/figures/sub-08_dseg.svg')
Surfaces#
Surfaces (white and pial) reconstructed with FreeSurfer (recon-all) overlaid on the participant’s T1w template.
from IPython.core.display import SVG
SVG(filename='content/sub-08/figures/sub-08_desc-reconall_T1w.svg')
EPI-space to T1-space#
bbregister was used to generate transformations from EPI-space to T1w-space. Note that Nearest Neighbor interpolation is used in the reportlets in order to highlight potential spin-history and other artifacts, whereas final images are resampled using Lanczos interpolation.
from IPython.core.display import SVG
SVG(filename='content/sub-08/figures/sub-08_task-flanker_run-1_desc-bbregister_bold.svg')
Brain mask and (anatomical/temporal) CompCor ROIs#
Brain mask calculated on the BOLD signal (red contour), along with the regions of interest (ROIs) used for the estimation of physiological and movement confounding components that can be then used as nuisance regressors in analysis. The anatomical CompCor ROI (magenta contour) is a mask combining CSF and WM (white-matter), where voxels containing a minimal partial volume of GM have been removed. The temporal CompCor ROI (blue contour) contains the top 2% most variable voxels within the brain mask. The brain edge (or crown) ROI (green contour) picks signals outside but close to the brain, which are decomposed into 24 principal components.
from IPython.core.display import SVG
SVG(filename='content/sub-08/figures/sub-08_task-flanker_run-1_desc-rois_bold.svg')
Bold Summary#
Summary statistics are plotted, which may reveal trends or artifacts in the BOLD data. Global signals calculated within the whole-brain (GS), within the white-matter (WM) and within cerebro-spinal fluid (CSF) show the mean BOLD signal in their corresponding masks. DVARS and FD show the standardized DVARS and framewise-displacement measures for each time point. A carpet plot shows the time series for all voxels within the brain mask, or if –cifti-output was enabled, all grayordinates. Voxels are grouped into cortical (dark/light blue), and subcortical (orange) gray matter, cerebellum (green) and white matter and CSF (red), indicated by the color map on the left-hand side.
from IPython.core.display import SVG
SVG(filename='content/sub-08/figures/sub-08_task-flanker_run-1_desc-carpetplot_bold.svg')
